ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet16e01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|U94997.1|CTU94997 Candida tropicalis 2,4-dienoyl-CoA reductas... 46 0.065
2gb|U94996.1|CTU94996 Candida tropicalis 2,4-dienoyl-CoA reductas... 46 0.065
3ref|XM_481633.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.26
4dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.26
5dbj|AP004759.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.26
6dbj|AP003884.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.26
7gb|AY770016.1| Rattus norvegicus clone Shan-2 cytokine target mR... 42 1.0
8gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 1.0
9gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 40 4.0
10gb|BT018289.1| Zea mays clone EL01T0205D02.c mRNA sequence 40 4.0
11gb|AC012417.13| Homo sapiens chromosome 18, clone RP11-408H20, c... 40 4.0
12dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 4.0
13gb|DQ179104.2| Ethanoligenens sp. hit B49 L-lactate dehydrogenas... 40 4.0

>gb|U94997.1|CTU94997 Candida tropicalis 2,4-dienoyl-CoA reductase precursor, gene,
            complete cds
          Length = 2640

 Score = 46.1 bits (23), Expect = 0.065
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 253  gttgaagaccctgaccttgaacc 275
            |||||||||||||||||||||||
Sbjct: 1660 gttgaagaccctgaccttgaacc 1682



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>gb|U94996.1|CTU94996 Candida tropicalis 2,4-dienoyl-CoA reductase precursor, gene,
            complete cds
          Length = 2943

 Score = 46.1 bits (23), Expect = 0.065
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 253  gttgaagaccctgaccttgaacc 275
            |||||||||||||||||||||||
Sbjct: 1953 gttgaagaccctgaccttgaacc 1975



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>ref|XM_481633.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2289

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 194  gcgttcgcgttcggcgccggca 215
            ||||||||||||||||||||||
Sbjct: 1807 gcgttcgcgttcggcgccggca 1828



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 194      gcgttcgcgttcggcgccggca 215
                ||||||||||||||||||||||
Sbjct: 14358721 gcgttcgcgttcggcgccggca 14358742



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>dbj|AP004759.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
            clone:P0670E08
          Length = 133106

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 194  gcgttcgcgttcggcgccggca 215
            ||||||||||||||||||||||
Sbjct: 3004 gcgttcgcgttcggcgccggca 3025



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>dbj|AP003884.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1136_A10
          Length = 101249

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 194   gcgttcgcgttcggcgccggca 215
             ||||||||||||||||||||||
Sbjct: 61801 gcgttcgcgttcggcgccggca 61822



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>gb|AY770016.1| Rattus norvegicus clone Shan-2 cytokine target mRNA sequence
          Length = 1921

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 187  cgcactcgcgttcgcgttcggcgcc 211
            |||||||||||||||| ||||||||
Sbjct: 1385 cgcactcgcgttcgcgctcggcgcc 1409



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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 191     ctcgcgttcgcgttcggcgccggca 215
               ||||||||||||| |||||||||||
Sbjct: 4250614 ctcgcgttcgcgtacggcgccggca 4250590



 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 264     tgaccttgaacccgaggtcg 283
               ||||||||||||||||||||
Sbjct: 2347051 tgaccttgaacccgaggtcg 2347032



 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 205    cggcgccggcaggcggagcg 224
              ||||||||||||||||||||
Sbjct: 787085 cggcgccggcaggcggagcg 787066



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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 192     tcgcgttcgcgttcggcgccggca 215
               ||||||||||||||||||| ||||
Sbjct: 1149571 tcgcgttcgcgttcggcgcgggca 1149594



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>gb|BT018289.1| Zea mays clone EL01T0205D02.c mRNA sequence
          Length = 1539

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 207 gcgccggcaggcggagcgtg 226
           ||||||||||||||||||||
Sbjct: 331 gcgccggcaggcggagcgtg 312



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>gb|AC012417.13| Homo sapiens chromosome 18, clone RP11-408H20, complete sequence
          Length = 181552

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 41     caaaatgacaaacacatactacca 64
              ||||| ||||||||||||||||||
Sbjct: 124831 caaaaagacaaacacatactacca 124854



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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 201     cgttcggcgccggcaggcgg 220
               ||||||||||||||||||||
Sbjct: 8905880 cgttcggcgccggcaggcgg 8905899



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>gb|DQ179104.2| Ethanoligenens sp. hit B49 L-lactate dehydrogenase gene, complete
           cds
          Length = 1139

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 168 gcatcgtgggcaccggcacc 187
           ||||||||||||||||||||
Sbjct: 533 gcatcgtgggcaccggcacc 552


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,914,264
Number of Sequences: 3902068
Number of extensions: 1914264
Number of successful extensions: 31943
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31697
Number of HSP's gapped (non-prelim): 246
length of query: 306
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 284
effective length of database: 17,147,199,772
effective search space: 4869804735248
effective search space used: 4869804735248
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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