ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet16c10 |
|---|---|
| Clone Library Name | barley_pub |
>DDB1_LYCCS (Q6E7D1) DNA damage binding protein 1 (UV-damaged DNA-binding protein| 1) Length = 1095 Score = 125 bits (314), Expect = 3e-29 Identities = 60/77 (77%), Positives = 70/77 (90%) Frame = -2 Query: 363 LQATLVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMA 184 LQ L K IKGVG LSHEQWRSF+N+KKT +A+NFLDGDLIESFLDL+R++MEE++KAM+ Sbjct: 1019 LQTNLRKVIKGVGGLSHEQWRSFYNEKKTVDAKNFLDGDLIESFLDLSRNRMEEISKAMS 1078 Query: 183 VPVEELSKRVEELTRLH 133 VPVEEL KRVEELTRLH Sbjct: 1079 VPVEELMKRVEELTRLH 1095
>DDB1_LYCES (Q6QNU4) DNA damage binding protein 1 (UV-damaged DNA-binding protein| 1) (High pigmentation protein 1) Length = 1090 Score = 125 bits (314), Expect = 3e-29 Identities = 60/77 (77%), Positives = 70/77 (90%) Frame = -2 Query: 363 LQATLVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMA 184 LQ L K IKGVG LSHEQWRSF+N+KKT +A+NFLDGDLIESFLDL+R++MEE++KAM+ Sbjct: 1014 LQTNLRKVIKGVGGLSHEQWRSFYNEKKTVDAKNFLDGDLIESFLDLSRNRMEEISKAMS 1073 Query: 183 VPVEELSKRVEELTRLH 133 VPVEEL KRVEELTRLH Sbjct: 1074 VPVEELMKRVEELTRLH 1090
>DDB1A_ARATH (Q9M0V3) DNA damage binding protein 1a (UV-damaged DNA-binding| protein 1a) (DDB1a) Length = 1088 Score = 122 bits (307), Expect = 2e-28 Identities = 59/77 (76%), Positives = 71/77 (92%) Frame = -2 Query: 363 LQATLVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMA 184 LQ++L K IKGVG LSHEQWRSF+N+K+T+EARNFLDGDLIESFLDL+R+KME+++K+M Sbjct: 1012 LQSSLRKVIKGVGGLSHEQWRSFNNEKRTAEARNFLDGDLIESFLDLSRNKMEDISKSMN 1071 Query: 183 VPVEELSKRVEELTRLH 133 V VEEL KRVEELTRLH Sbjct: 1072 VQVEELCKRVEELTRLH 1088
>DDB1B_ARATH (O49552) DNA damage binding protein 1b (UV-damaged DNA-binding| protein 1b) (DDB1b) Length = 1088 Score = 118 bits (295), Expect = 4e-27 Identities = 57/77 (74%), Positives = 67/77 (87%) Frame = -2 Query: 363 LQATLVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMA 184 LQ +L K IKGVG LSHEQWRSF+N+K+T+EA+ +LDGDLIESFLDL+R KMEE++K M Sbjct: 1012 LQTSLRKVIKGVGGLSHEQWRSFNNEKRTAEAKGYLDGDLIESFLDLSRGKMEEISKGMD 1071 Query: 183 VPVEELSKRVEELTRLH 133 V VEEL KRVEELTRLH Sbjct: 1072 VQVEELCKRVEELTRLH 1088
>DDB1_HUMAN (Q16531) DNA damage-binding protein 1 (Damage-specific DNA-binding| protein 1) (UV-damaged DNA-binding factor) (DDB p127 subunit) (DDBa) (UV-damaged DNA-binding protein 1) (UV-DDB 1) (Xeroderma pigmentosum group E-complementing protein) (XPCe) Length = 1140 Score = 79.3 bits (194), Expect = 2e-15 Identities = 41/87 (47%), Positives = 53/87 (60%), Gaps = 10/87 (11%) Frame = -2 Query: 363 LQATLVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAM- 187 +Q L K IK VG + H WRSFH ++KT A F+DGDLIESFLD++R KM+EV + Sbjct: 1054 MQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQ 1113 Query: 186 ---------AVPVEELSKRVEELTRLH 133 ++L K VEELTR+H Sbjct: 1114 YDDGSGMKREATADDLIKVVEELTRIH 1140
>DDB1_CERAE (P33194) DNA damage-binding protein 1 (Damage-specific DNA-binding| protein 1) (DDB p127 subunit) (DDBa) (UV-damaged DNA-binding protein 1) (UV-DDB 1) Length = 1140 Score = 79.3 bits (194), Expect = 2e-15 Identities = 41/87 (47%), Positives = 53/87 (60%), Gaps = 10/87 (11%) Frame = -2 Query: 363 LQATLVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAM- 187 +Q L K IK VG + H WRSFH ++KT A F+DGDLIESFLD++R KM+EV + Sbjct: 1054 MQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQ 1113 Query: 186 ---------AVPVEELSKRVEELTRLH 133 ++L K VEELTR+H Sbjct: 1114 YDDGSGMKREATADDLIKVVEELTRIH 1140
>DDB1_SCHPO (O13807) DNA damage-binding protein 1 (Damage-specific DNA-binding| protein 1) Length = 1072 Score = 49.7 bits (117), Expect = 2e-06 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 6/83 (7%) Frame = -2 Query: 363 LQATLVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKA-- 190 LQ + K I G LSH++W+ + + +TS + + +DG LIES L L + E+ Sbjct: 990 LQDNIRKVIPSFGGLSHKEWKEYRGENETSPS-DLIDGSLIESILGLREPILNEIVNGGH 1048 Query: 189 ----MAVPVEELSKRVEELTRLH 133 + + V++L +E L +LH Sbjct: 1049 EGTKLDISVQDLKSIIENLEKLH 1071
>CPSF1_DROME (Q9V726) Cleavage and polyadenylation specificity factor, 160 kDa| subunit (CPSF 160 kDa subunit) (CPSF-160) (dCPSF) Length = 1455 Score = 38.1 bits (87), Expect = 0.005 Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 2/78 (2%) Frame = -2 Query: 363 LQATLVKFIKGVGSLSHEQWRSFHNDKKT--SEARNFLDGDLIESFLDLNRSKMEEVAKA 190 LQ L+ + + + L+ +++R+ + KK + +R +DGDLI S+ + S+ EVAK Sbjct: 1374 LQNVLLSYQEHLCGLNPKEYRTLKSSKKQGINPSRCIIDGDLIWSYRLMANSERNEVAKK 1433 Query: 189 MAVPVEELSKRVEELTRL 136 + EE+ + E+ RL Sbjct: 1434 IGTRTEEILGDLLEIERL 1451
>RSE1_YEAST (Q04693) Pre-mRNA splicing factor RSE1 (RNA splicing and ER to Golgi| transport factor 1) (Spliceosome-associated protein 130) Length = 1361 Score = 36.2 bits (82), Expect = 0.020 Identities = 19/58 (32%), Positives = 38/58 (65%), Gaps = 1/58 (1%) Frame = -2 Query: 315 HEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAM-AVPVEELSKRVEEL 145 H+++RS++ + R +DGDL E+FL L+ ++ E +AK + +V VE++ + + E+ Sbjct: 1304 HQEYRSYY-----APVRKVIDGDLCENFLRLSLNEQEFLAKNLKSVQVEDIIQTINEV 1356
>RSE1_DEBHA (Q6BYK1) Pre-mRNA-splicing factor RSE1| Length = 1256 Score = 35.8 bits (81), Expect = 0.026 Identities = 18/57 (31%), Positives = 32/57 (56%) Frame = -2 Query: 315 HEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEEL 145 H ++RS++N K N +DGDLIE F +L++S + + E+ K++ E+ Sbjct: 1199 HLKFRSYYNPVK-----NVMDGDLIERFYELSQSMKIRIGTELNRTPREIEKKISEM 1250
>RSE1_CANAL (Q5A7S5) Pre-mRNA-splicing factor RSE1| Length = 1219 Score = 34.7 bits (78), Expect = 0.059 Identities = 18/57 (31%), Positives = 34/57 (59%) Frame = -2 Query: 315 HEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEEL 145 H + RS++N K N +DGDL+E FL+ + S E+++ + V ++ K++ +L Sbjct: 1162 HLKLRSYYNPIK-----NVIDGDLLERFLEFDISLKIEISRKLNKSVNDIEKKLIDL 1213
>IFNG_SIGHI (Q9QXX2) Interferon gamma precursor (IFN-gamma)| Length = 170 Score = 32.0 bits (71), Expect = 0.38 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%) Frame = -2 Query: 285 KKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELS---KRVEEL 145 K E+ N + DLI +F + +R KM++ K +PV +L K V EL Sbjct: 84 KTIQESINTIRADLIVNFFNNSREKMDDFIKLTTIPVNDLQVQRKAVNEL 133
>IFNG_MOSBE (Q647G2) Interferon gamma precursor (IFN-gamma)| Length = 166 Score = 32.0 bits (71), Expect = 0.38 Identities = 14/60 (23%), Positives = 34/60 (56%), Gaps = 3/60 (5%) Frame = -2 Query: 306 WRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELS---KRVEELTRL 136 + +F +D+ + + + D+ + FL+ + K+E+ K + +PV++L K + EL ++ Sbjct: 80 FENFKDDQVIQRSMDIIKQDMFQKFLNGSSEKLEDFKKLIQIPVDDLQIQRKAINELIKV 139
>Y109_NPVOP (O10348) Hypothetical 44.3 kDa protein (ORF109)| Length = 390 Score = 32.0 bits (71), Expect = 0.38 Identities = 19/81 (23%), Positives = 41/81 (50%), Gaps = 3/81 (3%) Frame = -2 Query: 324 SLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMA-VPVEELSKRVEE 148 +L HE+ S +N + R L GD+ + +NR+ ++ V A + + + S+ + E Sbjct: 224 NLPHEEVDSLYNKLNWARTRRLLRGDIPSNCATVNRASLQYVKDAQTLLHIAKCSQTIVE 283 Query: 147 LTRL--H*VAPCRVHPVLFVR 91 R+ + P ++ P++ V+ Sbjct: 284 FVRIFQQLIFPYQIVPIVIVK 304
>SY124_ARATH (O64791) Putative syntaxin-124 (AtSYP124)| Length = 303 Score = 31.6 bits (70), Expect = 0.50 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 8/60 (13%) Frame = -2 Query: 339 IKGVGSL------SHEQWRSFHNDKKTSEARNFLDGDLIESF--LDLNRSKMEEVAKAMA 184 +KGV +L S+E+ ++ HN KK E R +DGD+ + + + + K+E + KA A Sbjct: 47 MKGVETLYKSLQDSNEECKTVHNAKKVKELRAKMDGDVAQVLKRVKMIKQKLEALEKANA 106
>SY125_ARATH (Q9SXB0) Putative syntaxin-125 (AtSYP125)| Length = 298 Score = 31.2 bits (69), Expect = 0.65 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 8/60 (13%) Frame = -2 Query: 339 IKGVGSL------SHEQWRSFHNDKKTSEARNFLDGD--LIESFLDLNRSKMEEVAKAMA 184 +KGV +L S+E+ ++ HN KK E R +DGD ++ + + + K+E + KA A Sbjct: 42 MKGVEALYKKLQDSNEECKTVHNAKKVKELRAKMDGDVAMVLKRVKIIKQKLEALEKANA 101
>SIN3A_MOUSE (Q60520) Paired amphipathic helix protein Sin3a (Transcriptional| corepressor Sin3a) (Histone deacetylase complex subunit Sin3a) Length = 1282 Score = 29.6 bits (65), Expect = 1.9 Identities = 29/91 (31%), Positives = 41/91 (45%) Frame = -2 Query: 291 NDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH*VAPCRV 112 N KKT E N D +E LN KM V K+ E+ R L R H + RV Sbjct: 1160 NSKKTME--NVESLDKLECRFKLNSYKMVYVIKS-----EDYMYRRTALLRAH-QSHERV 1211 Query: 111 HPVLFVRFRCVVNRWRPENDPLQVFVATFRF 19 L RF+ V++W E+ P ++ T ++ Sbjct: 1212 SKRLHQRFQAWVDKWTKEHVPREMAAETSKW 1242
>SIN3A_HUMAN (Q96ST3) Paired amphipathic helix protein Sin3a (Transcriptional| corepressor Sin3a) (Histone deacetylase complex subunit Sin3a) Length = 1273 Score = 29.6 bits (65), Expect = 1.9 Identities = 29/91 (31%), Positives = 42/91 (46%) Frame = -2 Query: 291 NDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH*VAPCRV 112 N KKT E + LD +E LN KM V K+ E+ R L R H + RV Sbjct: 1151 NSKKTMENVDSLDK--LECRFKLNSYKMVYVIKS-----EDYMYRRTALLRAH-QSHERV 1202 Query: 111 HPVLFVRFRCVVNRWRPENDPLQVFVATFRF 19 L RF+ V++W E+ P ++ T ++ Sbjct: 1203 SKRLHQRFQAWVDKWTKEHVPREMAAETSKW 1233
>APOL4_HUMAN (Q9BPW4) Apolipoprotein-L4 precursor (Apolipoprotein L-IV)| (ApoL-IV) Length = 351 Score = 29.3 bits (64), Expect = 2.5 Identities = 12/39 (30%), Positives = 24/39 (61%) Frame = -2 Query: 249 DLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 133 +L++ LDL++ E A+++ +EL + + ELT +H Sbjct: 307 NLVQDSLDLHKGAKSESAESLRQWAQELEENLNELTHIH 345
>CO6A2_MOUSE (Q02788) Collagen alpha-2(VI) chain precursor| Length = 1029 Score = 29.3 bits (64), Expect = 2.5 Identities = 17/37 (45%), Positives = 20/37 (54%) Frame = -1 Query: 364 APGNPGQVHQGRGQPEPRAVAVVPQRQEDVGGPQLPG 254 APG+PG V G+G P PR P R+ D G PG Sbjct: 411 APGSPG-VKGGKGGPGPRGPKGEPGRRGDPGTKGGPG 446
>SMRC2_MOUSE (Q6PDG5) SWI/SNF-related matrix-associated actin-dependent regulator| of chromatin subfamily C member 2 (SWI/SNF complex 170 kDa subunit) (BRG1-associated factor 170) Length = 1213 Score = 29.3 bits (64), Expect = 2.5 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%) Frame = +3 Query: 243 SGRRPGSCGPPTSSCRCGTTA---TARGSGCPRP**T*PGLP 359 SG PGS GP + GTTA + +G P+P PG+P Sbjct: 1000 SGAPPGSLGPSEQIGQAGTTAGPQQPQQAGAPQPGAVPPGVP 1041
>CPSF1_CAEEL (Q9N4C2) Probable cleavage and polyadenylation specificity factor,| 160 kDa subunit (CPSF 160 kDa subunit) Length = 1454 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/45 (28%), Positives = 26/45 (57%) Frame = -2 Query: 270 ARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRL 136 ARN +DGD++E +L L+ ++A+ + V + + +L R+ Sbjct: 1406 ARNLIDGDVVEQYLHLSLYDKTDLARRLGVGRYHIIDDLMQLRRM 1450
>G168_PARPR (P17053) G surface protein, allelic form 168 precursor| Length = 2704 Score = 28.5 bits (62), Expect = 4.2 Identities = 12/35 (34%), Positives = 17/35 (48%) Frame = +2 Query: 32 ATNTCRGSFSGRQRFTTQRKRTNKTGCTRHGAT*C 136 A TC + G +++ K GCT +GAT C Sbjct: 1637 AATTCDAVYLGTGNYSSANCNEMKAGCTNNGATAC 1671
>BRO1_YEAST (P48582) Vacuolar sorting protein BRO1 (BRO domain-containing| protein 1) (BCK1-like resistance to osmotic shock protein 1) (Vacuolar protein sorting protein 31) (Amino acid sensor-independent protein 6) (Nitrogen permease inactivating protein Length = 844 Score = 28.5 bits (62), Expect = 4.2 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 3/35 (8%) Frame = -2 Query: 324 SLSHEQWRSFHNDKKTSE---ARNFLDGDLIESFL 229 S QWR+F+++K TSE RN +G+L S L Sbjct: 29 SYGSSQWRTFYDEKATSELDHLRNNANGELAPSSL 63
>YHY2_YEAST (P38870) Hypothetical 90.1 kDa protein in OYE2-GND1 intergenic| region Length = 785 Score = 28.5 bits (62), Expect = 4.2 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Frame = -2 Query: 351 LVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDGDLIESF-LDLNRSKMEEVAKAMAVPV 175 L+K IK ++ W+ N+ + EA N ++ L+E N E+V + +P+ Sbjct: 60 LIKDIKFYNDFVNKFWKPTLNNLQKMEATNSMNSRLLEVMSKQFNIISTEQVERDCKIPL 119 Query: 174 EELSKRVEELTR 139 +EL E R Sbjct: 120 QELRDLNESFLR 131
>CO5A3_HUMAN (P25940) Collagen alpha-3(V) chain precursor| Length = 1745 Score = 28.5 bits (62), Expect = 4.2 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%) Frame = -1 Query: 361 PGNPGQV--HQGRGQPEPRAVAVVPQRQEDVGGPQLPG 254 PG PGQ H +G P P+ + P + G P +PG Sbjct: 637 PGPPGQQGNHGSQGLPGPQGLIGTPGEKGPPGNPGIPG 674
>CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor| Length = 1763 Score = 28.5 bits (62), Expect = 4.2 Identities = 16/36 (44%), Positives = 19/36 (52%) Frame = -1 Query: 361 PGNPGQVHQGRGQPEPRAVAVVPQRQEDVGGPQLPG 254 PG PGQ + G P PR +P + VG P LPG Sbjct: 617 PGYPGQKGE-TGFPGPRGQEGLPGKPGIVGAPGLPG 651
>RSE1_ASHGO (Q753D4) Pre-mRNA-splicing factor RSE1| Length = 1288 Score = 28.1 bits (61), Expect = 5.5 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%) Frame = -2 Query: 306 WRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEV-AKAMAVPVEELSKRVEEL 145 +RS++N R+ DGDL E FL+L S+ + A+ V+E+ +R+ ++ Sbjct: 1234 YRSYYNP-----VRHVTDGDLCEQFLELYPSEKNFLAARVDNRSVQEIERRINDM 1283
>SY121_ARATH (Q9ZSD4) Syntaxin-121 (AtSYP121) (Syntaxin-related protein At-Syr1)| Length = 346 Score = 28.1 bits (61), Expect = 5.5 Identities = 15/42 (35%), Positives = 25/42 (59%) Frame = -2 Query: 324 SLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEV 199 S HEQ ++ HN K + R+ +DGD+ + L ++KM +V Sbjct: 69 SSCHEQSKTLHNAKAVKDLRSKMDGDV---GVALKKAKMIKV 107
>ODP2_BUCAI (P57302) Dihydrolipoyllysine-residue acetyltransferase component of| pyruvate dehydrogenase complex (EC 2.3.1.12) (E2) (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex) Length = 396 Score = 28.1 bits (61), Expect = 5.5 Identities = 10/31 (32%), Positives = 21/31 (67%) Frame = +2 Query: 236 DSIRSPSRKLRASDVFLSLWNDRHCSWLRLP 328 DS +S +++L SD+ ++ N+ H +W+ +P Sbjct: 159 DSKKSKTKELELSDIQKNIGNNLHRNWMNIP 189
>MODA_MYCTU (P0A5Y0) Molybdate-binding protein precursor| Length = 261 Score = 28.1 bits (61), Expect = 5.5 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = -2 Query: 243 IESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 133 I SF DL R + V +VP ++R+E+ T +H Sbjct: 133 IRSFADLTRPGLNVVVCQPSVPCGSATRRIEDATGIH 169
>MODA_MYCBO (P0A5Y1) Molybdate-binding protein precursor| Length = 261 Score = 28.1 bits (61), Expect = 5.5 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = -2 Query: 243 IESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 133 I SF DL R + V +VP ++R+E+ T +H Sbjct: 133 IRSFADLTRPGLNVVVCQPSVPCGSATRRIEDATGIH 169
>GATB_WOLSU (Q7M7Y2) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B| (EC 6.3.5.-) (Asp/Glu-ADT subunit B) Length = 472 Score = 28.1 bits (61), Expect = 5.5 Identities = 16/52 (30%), Positives = 29/52 (55%) Frame = -2 Query: 303 RSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEE 148 RS +++++ R F D DL+ F+D + MEE K +P E+ ++ V + Sbjct: 258 RSMRGKEESADYRYFPDPDLLPVFID--ATLMEEAEKIPELPDEKRARLVRD 307
>IFNG_CAPHI (P79154) Interferon gamma precursor (IFN-gamma)| Length = 166 Score = 27.7 bits (60), Expect = 7.2 Identities = 12/60 (20%), Positives = 33/60 (55%), Gaps = 3/60 (5%) Frame = -2 Query: 306 WRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELS---KRVEELTRL 136 + + +++ + + + D+ + FL+ + K+E+ K + +PV++L K + EL ++ Sbjct: 80 FENLKDNQVIQRSMDIIKQDMFQKFLNGSSEKLEDFKKLIQIPVDDLQIQRKAINELIKV 139
>IFNG_BOVIN (P07353) Interferon gamma precursor (IFN-gamma)| Length = 166 Score = 27.7 bits (60), Expect = 7.2 Identities = 12/60 (20%), Positives = 33/60 (55%), Gaps = 3/60 (5%) Frame = -2 Query: 306 WRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELS---KRVEELTRL 136 + + +++ + + + D+ + FL+ + K+E+ K + +PV++L K + EL ++ Sbjct: 80 FENLKDNQVIQRSMDIIKQDMFQKFLNGSSEKLEDFKKLIQIPVDDLQIQRKAINELIKV 139
>MPPA1_ARATH (Q9ZU25) Probable mitochondrial-processing peptidase alpha subunit| 1, mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP 1) Length = 503 Score = 27.7 bits (60), Expect = 7.2 Identities = 16/39 (41%), Positives = 21/39 (53%) Frame = -2 Query: 258 LDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELT 142 L+G+L+E F+ N + V A V EEL K E LT Sbjct: 240 LNGELLEEFMTENFTAARMVLAASGVEHEELLKVAEPLT 278
>CORA_SHIFL (P0ABI7) Magnesium and cobalt transport protein corA| Length = 316 Score = 27.7 bits (60), Expect = 7.2 Identities = 15/63 (23%), Positives = 35/63 (55%) Frame = -2 Query: 324 SLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEEL 145 +L + +F + + +++ +DG+ E LDL +K+E++A +E + +E+L Sbjct: 103 TLRERELPAFRLYRMRARSQSMVDGNAYELLLDLFETKIEQLAD----EIENIYSDLEQL 158 Query: 144 TRL 136 +R+ Sbjct: 159 SRV 161
>CORA_ECOLI (P0ABI4) Magnesium and cobalt transport protein corA| Length = 316 Score = 27.7 bits (60), Expect = 7.2 Identities = 15/63 (23%), Positives = 35/63 (55%) Frame = -2 Query: 324 SLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEEL 145 +L + +F + + +++ +DG+ E LDL +K+E++A +E + +E+L Sbjct: 103 TLRERELPAFRLYRMRARSQSMVDGNAYELLLDLFETKIEQLAD----EIENIYSDLEQL 158 Query: 144 TRL 136 +R+ Sbjct: 159 SRV 161
>CORA_ECOL6 (P0ABI5) Magnesium and cobalt transport protein corA| Length = 316 Score = 27.7 bits (60), Expect = 7.2 Identities = 15/63 (23%), Positives = 35/63 (55%) Frame = -2 Query: 324 SLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEEL 145 +L + +F + + +++ +DG+ E LDL +K+E++A +E + +E+L Sbjct: 103 TLRERELPAFRLYRMRARSQSMVDGNAYELLLDLFETKIEQLAD----EIENIYSDLEQL 158 Query: 144 TRL 136 +R+ Sbjct: 159 SRV 161
>CORA_ECO57 (P0ABI6) Magnesium and cobalt transport protein corA| Length = 316 Score = 27.7 bits (60), Expect = 7.2 Identities = 15/63 (23%), Positives = 35/63 (55%) Frame = -2 Query: 324 SLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEEL 145 +L + +F + + +++ +DG+ E LDL +K+E++A +E + +E+L Sbjct: 103 TLRERELPAFRLYRMRARSQSMVDGNAYELLLDLFETKIEQLAD----EIENIYSDLEQL 158 Query: 144 TRL 136 +R+ Sbjct: 159 SRV 161
>CO4A1_MOUSE (P02463) Collagen alpha-1(IV) chain precursor| Length = 1669 Score = 27.7 bits (60), Expect = 7.2 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 10/48 (20%) Frame = -1 Query: 361 PGNPGQVHQG----------RGQPEPRAVAVVPQRQEDVGGPQLPGRR 248 PGNPG Q +GQP + P + +GGP +PG + Sbjct: 722 PGNPGPQGQKGEPGIGLPGLKGQPGLPGIPGTPGEKGSIGGPGVPGEQ 769
>Y429_METAC (Q8TTK2) UPF0272 protein MA0429| Length = 396 Score = 27.7 bits (60), Expect = 7.2 Identities = 10/23 (43%), Positives = 17/23 (73%) Frame = -2 Query: 207 EEVAKAMAVPVEELSKRVEELTR 139 +++AKA +PV E+ +R EE+ R Sbjct: 370 KKIAKASGIPVREIMRRTEEVAR 392
>CO2A1_RAT (P05539) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1419 Score = 27.7 bits (60), Expect = 7.2 Identities = 18/44 (40%), Positives = 18/44 (40%) Frame = +3 Query: 231 GMTQSGRRPGSCGPPTSSCRCGTTATARGSGCPRP**T*PGLPG 362 G S PG GPP R G T A G P P PG PG Sbjct: 1105 GKDGSNGIPGPIGPPGPRGRSGETGPAGPPGNPGP----PGPPG 1144
>EMID1_HUMAN (Q96A84) EMI domain-containing protein 1 precursor (Protein Emu1)| (Emilin and multimerin domain-containing protein 1) Length = 441 Score = 27.7 bits (60), Expect = 7.2 Identities = 16/36 (44%), Positives = 16/36 (44%) Frame = +3 Query: 255 PGSCGPPTSSCRCGTTATARGSGCPRP**T*PGLPG 362 PG GPP S R G T G P P PG PG Sbjct: 223 PGPQGPPGSPGRAGAVGTPGERGPPGP----PGPPG 254
>CO6A2_HUMAN (P12110) Collagen alpha-2(VI) chain precursor| Length = 1019 Score = 27.7 bits (60), Expect = 7.2 Identities = 16/37 (43%), Positives = 19/37 (51%) Frame = -1 Query: 364 APGNPGQVHQGRGQPEPRAVAVVPQRQEDVGGPQLPG 254 APG+PG V +G P PR P R+ D G PG Sbjct: 401 APGSPG-VKGAKGGPGPRGPKGEPGRRGDPGTKGSPG 436
>SMRC2_HUMAN (Q8TAQ2) SWI/SNF-related matrix-associated actin-dependent regulator| of chromatin subfamily C member 2 (SWI/SNF complex 170 kDa subunit) (BRG1-associated factor 170) Length = 1214 Score = 27.7 bits (60), Expect = 7.2 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%) Frame = +3 Query: 243 SGRRPGSCGPPTSSCRCGTTA---TARGSGCPRP**T*PGLP 359 SG PGS GP + G+TA + +G P+P PG+P Sbjct: 1000 SGAPPGSLGPSEQIGQAGSTAGPQQQQPAGAPQPGAVPPGVP 1041
>DYN_DROME (P27619) Dynamin (EC 3.6.5.5) (dDyn) (Protein shibire)| Length = 877 Score = 27.7 bits (60), Expect = 7.2 Identities = 20/51 (39%), Positives = 22/51 (43%), Gaps = 5/51 (9%) Frame = -1 Query: 361 PGNPGQVHQG-RGQPEP----RAVAVVPQRQEDVGGPQLPGRRPD*VIPRP 224 PG P Q G R P P R +P R G P LPG RP +P P Sbjct: 775 PGPPAQSSLGGRNPPLPPSTGRPAPAIPNRPGG-GAPPLPGGRPGGSLPPP 824
>IFNG_BUBBU (Q8SPW9) Interferon gamma precursor (IFN-gamma)| Length = 166 Score = 27.3 bits (59), Expect = 9.4 Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 3/41 (7%) Frame = -2 Query: 249 DLIESFLDLNRSKMEEVAKAMAVPVEELS---KRVEELTRL 136 D+ + FL+ + K+E+ K + +PV++L K + EL ++ Sbjct: 99 DMFQKFLNGSSEKLEDFKKLIQIPVDDLQTQRKAINELIKV 139
>GLNA1_RHIME (Q59747) Glutamine synthetase 1 (EC 6.3.1.2) (Glutamine synthetase| I) (Glutamate--ammonia ligase I) (GSI) Length = 469 Score = 27.3 bits (59), Expect = 9.4 Identities = 19/50 (38%), Positives = 25/50 (50%) Frame = -2 Query: 327 GSLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVP 178 GSL E S D+K A D D I+SF++L KM+EV + P Sbjct: 413 GSL-REALESLDKDRKFLTAGGVFDDDQIDSFIEL---KMQEVMRFEMTP 458
>CCNT1_MOUSE (Q9QWV9) Cyclin-T1 (Cyclin-T) (CycT1)| Length = 724 Score = 27.3 bits (59), Expect = 9.4 Identities = 16/47 (34%), Positives = 25/47 (53%) Frame = -2 Query: 246 LIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH*VAPCRVHP 106 +I+SF +R M A +A VEE K++E + + VA +HP Sbjct: 71 MIQSFTQFHRYSMAPAALFLAAKVEEQPKKLEHVIK---VAHTCLHP 114
>SYT8_HUMAN (Q8NBV8) Synaptotagmin-8 (Synaptotagmin VIII) (SytVIII)| Length = 172 Score = 27.3 bits (59), Expect = 9.4 Identities = 26/91 (28%), Positives = 32/91 (35%) Frame = -1 Query: 346 QVHQGRGQPEPRAVAVVPQRQEDVGGPQLPGRRPD*VIPRPXXXXXXXXXXXXXGPCRGA 167 Q QGR P V P G +PG PD V P R A Sbjct: 8 QTMQGRKMGHP---PVSPSAPAPAGTTAIPGLIPDLVAGTPWP--------------RWA 50 Query: 166 VQAGGGADETALGSAVPCTSCFICSFSLCCK 74 + AG AL + V SC +C+ CC+ Sbjct: 51 LIAG------ALAAGVLLVSCLLCAACCCCR 75
>ERG28_ARATH (O80594) Probable ergosterol biosynthetic protein 28| Length = 110 Score = 27.3 bits (59), Expect = 9.4 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = -1 Query: 115 CTSCFICSFSLCCKPL 68 CT CF+C+F+L KPL Sbjct: 55 CTLCFLCAFNLENKPL 70
>CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1418 Score = 27.3 bits (59), Expect = 9.4 Identities = 16/36 (44%), Positives = 16/36 (44%) Frame = +3 Query: 255 PGSCGPPTSSCRCGTTATARGSGCPRP**T*PGLPG 362 PG GPP R G T A G P P PG PG Sbjct: 1112 PGPIGPPGPRGRSGETGPAGPPGNPGP----PGPPG 1143
>CCNT1_HORSE (Q9XT26) Cyclin-T1 (Cyclin-T) (CycT1)| Length = 727 Score = 27.3 bits (59), Expect = 9.4 Identities = 15/47 (31%), Positives = 26/47 (55%) Frame = -2 Query: 246 LIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH*VAPCRVHP 106 +I+SF +R+ + A +A VEE K++E + + VA +HP Sbjct: 71 MIQSFTQFHRNSVAPAALFLAAKVEEQPKKLEHVIK---VAHACLHP 114
>SPN6_SCHPO (Q09883) Septin homolog spn6| Length = 380 Score = 27.3 bits (59), Expect = 9.4 Identities = 15/63 (23%), Positives = 27/63 (42%) Frame = -2 Query: 333 GVGSLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRV 154 G+ L E + +N+K+ + + + ESF KM E A+ + E +R+ Sbjct: 301 GIPKLKKEHYERLNNEKRAIQQKITQMTNETESFFQAKEEKMIETRDALNSELSEYHERI 360 Query: 153 EEL 145 L Sbjct: 361 RAL 363 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,209,606 Number of Sequences: 219361 Number of extensions: 744089 Number of successful extensions: 3344 Number of sequences better than 10.0: 55 Number of HSP's better than 10.0 without gapping: 3097 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3330 length of database: 80,573,946 effective HSP length: 96 effective length of database: 59,515,290 effective search space used: 1428366960 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
