Clone Information

BLAST Search Result

Clone Name	rbaet16b04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AC135258.2\| Oryza sativa (japonica cultivar-group) chromosome...	70	5e-09
2	gb\|AC147811.2\| Oryza sativa (japonica cultivar-group) chromosome...	70	5e-09
3	gb\|AC112208.3\| Oryza sativa (japonica cultivar-group) chromosome...	70	5e-09
4	dbj\|AP008217.1\| Oryza sativa (japonica cultivar-group) genomic D...	70	5e-09
5	gb\|DP000010.1\| Oryza sativa (japonica cultivar-group) chromosome...	70	5e-09
6	gb\|BT009571.1\| Triticum aestivum clone wre1n.pk0021.e3:fis, full...	64	3e-07
7	gb\|AC138195.2\| Oryza sativa (japonica cultivar-group) chromosome...	60	5e-06
8	dbj\|AK061247.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	54	3e-04
9	gb\|AY107519.1\| Zea mays PCO078033 mRNA sequence	46	0.074
10	gb\|AC101777.8\| Mus musculus chromosome 1, clone RP24-123J3, comp...	42	1.2
11	gb\|AC135793.4\| Oryza sativa chromosome 11 BAC clone OSJNBb0017P1...	42	1.2
12	ref\|XM_746399.1\| Aspergillus fumigatus Af293 actin-related prote...	42	1.2
13	ref\|XM_501466.1\| Yarrowia lipolytica CLIB122, YALI0C05258g predi...	42	1.2
14	gb\|AC131072.13\| Mus musculus chromosome 1, clone RP23-396F21, co...	42	1.2
15	dbj\|AK109384.2\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	1.2
16	gb\|AC174827.3\| Cavia porcellus clone CH234-477P24, complete sequ...	42	1.2
17	emb\|CR382129.1\| Yarrowia lipolytica chromosome C of strain CLIB1...	42	1.2
18	ref\|XM_477999.1\| Oryza sativa (japonica cultivar-group), mRNA	40	4.6
19	gb\|AC134248.3\| Mus musculus BAC clone RP23-338G21 from chromosom...	40	4.6
20	ref\|XM_989083.1\| PREDICTED: Mus musculus transglutaminase 4 (pro...	40	4.6
21	ref\|XM_791236.1\| PREDICTED: Strongylocentrotus purpuratus simila...	40	4.6
22	emb\|AL353701.15\| Human DNA sequence from clone RP11-203M2 on chr...	40	4.6
23	gb\|AC023301.5\| Homo sapiens chromosome 18, clone RP11-713C5, com...	40	4.6
24	gb\|AC091138.6\| Homo sapiens chromosome 18, clone RP11-676J15, co...	40	4.6
25	gb\|AC012495.9\| Homo sapiens BAC clone RP11-327F6 from 2, complet...	40	4.6
26	dbj\|AK035279.1\| Mus musculus adult male urinary bladder cDNA, RI...	40	4.6
27	gb\|AC017087.5\|AC017087 Homo sapiens BAC clone RP11-495H13 from 4...	40	4.6
28	emb\|BX005328.9\| Zebrafish DNA sequence from clone DKEY-63D15 in ...	40	4.6
29	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	4.6
30	gb\|AC087798.10\| Homo sapiens 12 BAC RP11-788H18 (Roswell Park Ca...	40	4.6
31	gb\|AF486627.1\| Mus musculus experimental autoimmune prostatitis ...	40	4.6
32	dbj\|AP003916.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	4.6
33	dbj\|AK106179.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	4.6
34	dbj\|AK059770.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	4.6
35	dbj\|AP001458.6\| Homo sapiens genomic DNA, chromosome 11 clone:RP...	40	4.6
36	gb\|AC133650.4\| Mus musculus BAC clone RP23-453B15 from 9, comple...	40	4.6
37	ref\|NM_177911.2\| Mus musculus transglutaminase 4 (prostate) (Tgm...	40	4.6
38	emb\|AL672285.8\| Mouse DNA sequence from clone RP23-45G5 on chrom...	40	4.6
39	emb\|AL805949.4\| Mouse DNA sequence from clone RP23-424K9 on chro...	40	4.6
40	emb\|AL645736.9\| Mouse DNA sequence from clone RP23-474J7 on chro...	40	4.6

>gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0097K08 map C827S, complete sequence
          Length = 137870

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 59/67 (88%)
 Strand = Plus / Minus

                                                                         
Query: 100   atggatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactga 159
             ||||||||||||| |  |||||||||||||| ||||||||| | ||||||||| ||||||
Sbjct: 45028 atggatagacctcgaacacagctcgagctccgagcttcttggcgatcttatagtcactga 44969

                    
Query: 160   agccagc 166
             | |||||
Sbjct: 44968 atccagc 44962

to top

>gb|AC147811.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0026P08 map near C827S, complete sequence
          Length = 148676

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 59/67 (88%)
 Strand = Plus / Plus

                                                                         
Query: 100   atggatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactga 159
             ||||||||||||| |  |||||||||||||| ||||||||| | ||||||||| ||||||
Sbjct: 50747 atggatagacctcgaacacagctcgagctccgagcttcttggcgatcttatagtcactga 50806

                    
Query: 160   agccagc 166
             | |||||
Sbjct: 50807 atccagc 50813

to top

>gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0015P05
              map C53961S, complete sequence
          Length = 175121

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 131/163 (80%)
 Strand = Plus / Plus

                                                                          
Query: 99     tatggatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactg 158
              ||||| |||||||||| |||  ||||||||||||| ||||| ||||| || ||| |||||
Sbjct: 140244 tatgggtagacctcaaagacgcctcgagctcccagtttcttcacaatattgtagtcactg 140303

                                                                          
Query: 159    aagccagccttggtgaagatctcgttccagtccttctcttcccgctgtcggcctctcgtc 218
              ||||| || ||| ||||||  ||   ||| || ||||| || |||||||||||| | |||
Sbjct: 140304 aagcctgctttgctgaagagatcacgccaatcattctcgtctcgctgtcggcctttggtc 140363

                                                         
Query: 219    atcaccagcatgagcatatccatgaggtgctgggtttccagca 261
              | ||||| |||   || |||||||||| |||||| ||| ||||
Sbjct: 140364 accaccatcatagccacatccatgaggagctgggcttctagca 140406



 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 55/61 (90%), Gaps = 1/61 (1%)
 Strand = Plus / Plus

                                                                          
Query: 103    gatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactgaagc 162
              ||||||||||||  | ||||||||||||||| ||||| |||||||||||| |||||||||
Sbjct: 138362 gatagacctcaaatatagctcgagctcccag-ttcttcacaatcttatagtcactgaagc 138420

               
Query: 163    c 163
              |
Sbjct: 138421 c 138421



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                                 
Query: 102    ggatagacctcaatgacagctcgagctcccagcttcttgacaatcttatag 152
              ||||||||||||| |||||||||||||| ||  || || ||||||||||||
Sbjct: 115956 ggatagacctcaaagacagctcgagctctcaattttttcacaatcttatag 116006



 Score = 44.1 bits (22), Expect = 0.29
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                         
Query: 102   ggatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactgaag 161
             ||||||||||||||||||   |||| |||||  ||||| |||||||| ||| | ||||||
Sbjct: 80889 ggatagacctcaatgacacaccgaggtcccaatttcttcacaatcttgtagtccctgaag 80948

               
Query: 162   cc 163
             ||
Sbjct: 80949 cc 80950

to top

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 131/163 (80%)
 Strand = Plus / Plus

                                                                            
Query: 99       tatggatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactg 158
                ||||| |||||||||| |||  ||||||||||||| ||||| ||||| || ||| |||||
Sbjct: 11353886 tatgggtagacctcaaagacgcctcgagctcccagtttcttcacaatattgtagtcactg 11353945

                                                                            
Query: 159      aagccagccttggtgaagatctcgttccagtccttctcttcccgctgtcggcctctcgtc 218
                ||||| || ||| ||||||  ||   ||| || ||||| || |||||||||||| | |||
Sbjct: 11353946 aagcctgctttgctgaagagatcacgccaatcattctcgtctcgctgtcggcctttggtc 11354005

                                                           
Query: 219      atcaccagcatgagcatatccatgaggtgctgggtttccagca 261
                | ||||| |||   || |||||||||| |||||| ||| ||||
Sbjct: 11354006 accaccatcatagccacatccatgaggagctgggcttctagca 11354048



 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 59/67 (88%)
 Strand = Plus / Plus

                                                                           
Query: 100     atggatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactga 159
               ||||||||||||| |  |||||||||||||| ||||||||| | ||||||||| ||||||
Sbjct: 7137527 atggatagacctcgaacacagctcgagctccgagcttcttggcgatcttatagtcactga 7137586

                      
Query: 160     agccagc 166
               | |||||
Sbjct: 7137587 atccagc 7137593



 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 55/61 (90%), Gaps = 1/61 (1%)
 Strand = Plus / Plus

                                                                            
Query: 103      gatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactgaagc 162
                ||||||||||||  | ||||||||||||||| ||||| |||||||||||| |||||||||
Sbjct: 11352004 gatagacctcaaatatagctcgagctcccag-ttcttcacaatcttatagtcactgaagc 11352062

                 
Query: 163      c 163
                |
Sbjct: 11352063 c 11352063



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                          
Query: 103      gatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactgaa 160
                |||||||||| | |||||||||||| || || ||||| |||||||||||| |||||||
Sbjct: 11549315 gatagacctcgaagacagctcgagcaccaagtttcttcacaatcttatagtcactgaa 11549372



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                                   
Query: 102      ggatagacctcaatgacagctcgagctcccagcttcttgacaatcttatag 152
                ||||||||||||| |||||||||||||| ||  || || ||||||||||||
Sbjct: 11329598 ggatagacctcaaagacagctcgagctctcaattttttcacaatcttatag 11329648



 Score = 44.1 bits (22), Expect = 0.29
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                            
Query: 102      ggatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactgaag 161
                ||||||||||||||||||   |||| |||||  ||||| |||||||| ||| | ||||||
Sbjct: 11294531 ggatagacctcaatgacacaccgaggtcccaatttcttcacaatcttgtagtccctgaag 11294590

                  
Query: 162      cc 163
                ||
Sbjct: 11294591 cc 11294592



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 63/77 (81%)
 Strand = Plus / Minus

                                                                            
Query: 105      tagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactgaagcca 164
                |||||||||||||||  ||||||||| || || || |  ||||| ||| | ||||| |||
Sbjct: 11485504 tagacctcaatgacacatcgagctcctagtttgttcatgatcttgtagtcgctgaatcca 11485445

                                 
Query: 165      gccttggtgaagatctc 181
                || || |||||||||||
Sbjct: 11485444 gcattagtgaagatctc 11485428



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 54/65 (83%)
 Strand = Plus / Plus

                                                                            
Query: 99       tatggatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactg 158
                |||||||||||||||| ||   |||||  ||| |||||||| |||||||| ||  |||||
Sbjct: 11437238 tatggatagacctcaaagatgcctcgaattcctagcttcttcacaatcttgtaatcactg 11437297

                     
Query: 159      aagcc 163
                |||||
Sbjct: 11437298 aagcc 11437302



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 121      ctcgagctcccagcttcttgacaatcttatag 152
                |||||||||| ||| |||| ||||||||||||
Sbjct: 11490647 ctcgagctccaagcatcttcacaatcttatag 11490678

to top

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 131/163 (80%)
 Strand = Plus / Plus

                                                                            
Query: 99       tatggatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactg 158
                ||||| |||||||||| |||  ||||||||||||| ||||| ||||| || ||| |||||
Sbjct: 11433075 tatgggtagacctcaaagacgcctcgagctcccagtttcttcacaatattgtagtcactg 11433134

                                                                            
Query: 159      aagccagccttggtgaagatctcgttccagtccttctcttcccgctgtcggcctctcgtc 218
                ||||| || ||| ||||||  ||   ||| || ||||| || |||||||||||| | |||
Sbjct: 11433135 aagcctgctttgctgaagagatcacgccaatcattctcgtctcgctgtcggcctttggtc 11433194

                                                           
Query: 219      atcaccagcatgagcatatccatgaggtgctgggtttccagca 261
                | ||||| |||   || |||||||||| |||||| ||| ||||
Sbjct: 11433195 accaccatcatagccacatccatgaggagctgggcttctagca 11433237



 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 59/67 (88%)
 Strand = Plus / Plus

                                                                           
Query: 100     atggatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactga 159
               ||||||||||||| |  |||||||||||||| ||||||||| | ||||||||| ||||||
Sbjct: 7203498 atggatagacctcgaacacagctcgagctccgagcttcttggcgatcttatagtcactga 7203557

                      
Query: 160     agccagc 166
               | |||||
Sbjct: 7203558 atccagc 7203564



 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 55/61 (90%), Gaps = 1/61 (1%)
 Strand = Plus / Plus

                                                                            
Query: 103      gatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactgaagc 162
                ||||||||||||  | ||||||||||||||| ||||| |||||||||||| |||||||||
Sbjct: 11431193 gatagacctcaaatatagctcgagctcccag-ttcttcacaatcttatagtcactgaagc 11431251

                 
Query: 163      c 163
                |
Sbjct: 11431252 c 11431252



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                          
Query: 103      gatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactgaa 160
                |||||||||| | |||||||||||| || || ||||| |||||||||||| |||||||
Sbjct: 11628504 gatagacctcgaagacagctcgagcaccaagtttcttcacaatcttatagtcactgaa 11628561



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                                   
Query: 102      ggatagacctcaatgacagctcgagctcccagcttcttgacaatcttatag 152
                ||||||||||||| |||||||||||||| ||  || || ||||||||||||
Sbjct: 11408787 ggatagacctcaaagacagctcgagctctcaattttttcacaatcttatag 11408837



 Score = 44.1 bits (22), Expect = 0.29
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                            
Query: 102      ggatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactgaag 161
                ||||||||||||||||||   |||| |||||  ||||| |||||||| ||| | ||||||
Sbjct: 11373720 ggatagacctcaatgacacaccgaggtcccaatttcttcacaatcttgtagtccctgaag 11373779

                  
Query: 162      cc 163
                ||
Sbjct: 11373780 cc 11373781



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 63/77 (81%)
 Strand = Plus / Minus

                                                                            
Query: 105      tagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactgaagcca 164
                |||||||||||||||  ||||||||| || || || |  ||||| ||| | ||||| |||
Sbjct: 11564693 tagacctcaatgacacatcgagctcctagtttgttcatgatcttgtagtcgctgaatcca 11564634

                                 
Query: 165      gccttggtgaagatctc 181
                || || |||||||||||
Sbjct: 11564633 gcattagtgaagatctc 11564617



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 54/65 (83%)
 Strand = Plus / Plus

                                                                            
Query: 99       tatggatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactg 158
                |||||||||||||||| ||   |||||  ||| |||||||| |||||||| ||  |||||
Sbjct: 11516427 tatggatagacctcaaagatgcctcgaattcctagcttcttcacaatcttgtaatcactg 11516486

                     
Query: 159      aagcc 163
                |||||
Sbjct: 11516487 aagcc 11516491



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 121      ctcgagctcccagcttcttgacaatcttatag 152
                |||||||||| ||| |||| ||||||||||||
Sbjct: 11569836 ctcgagctccaagcatcttcacaatcttatag 11569867

to top

>gb|BT009571.1| Triticum aestivum clone wre1n.pk0021.e3:fis, full insert mRNA
           sequence
          Length = 770

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 53/60 (88%)
 Strand = Plus / Minus

                                                                       
Query: 93  caaccttatggatagacctcaatgacagctcgagctcccagcttcttgacaatcttatag 152
           |||||||||||||||||||| |||||| |||||   || || ||||||||||||||||||
Sbjct: 517 caaccttatggatagacctcgatgacacctcgatggccaagtttcttgacaatcttatag 458

to top

>gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0005P21, complete sequence
          Length = 147381

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                       
Query: 103   gatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactgaa 160
             |||||||||| | |||||||||||| || || ||||| |||||||||||| |||||||
Sbjct: 64473 gatagacctcgaagacagctcgagcaccaagtttcttcacaatcttatagtcactgaa 64416



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 63/77 (81%)
 Strand = Plus / Plus

                                                                          
Query: 105    tagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactgaagcca 164
              |||||||||||||||  ||||||||| || || || |  ||||| ||| | ||||| |||
Sbjct: 128284 tagacctcaatgacacatcgagctcctagtttgttcatgatcttgtagtcgctgaatcca 128343

                               
Query: 165    gccttggtgaagatctc 181
              || || |||||||||||
Sbjct: 128344 gcattagtgaagatctc 128360



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 121    ctcgagctcccagcttcttgacaatcttatag 152
              |||||||||| ||| |||| ||||||||||||
Sbjct: 123141 ctcgagctccaagcatcttcacaatcttatag 123110

to top

>dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-E05, full
            insert sequence
          Length = 1262

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                               
Query: 102  ggatagacctcaatgacagctcgagctcccagcttcttgacaatcttatag 152
            ||||||||||||| |||||||||||||| ||  || || ||||||||||||
Sbjct: 1167 ggatagacctcaaagacagctcgagctctcaattttttcacaatcttatag 1117

to top

>gb|AY107519.1| Zea mays PCO078033 mRNA sequence
          Length = 1299

 Score = 46.1 bits (23), Expect = 0.074
 Identities = 65/79 (82%)
 Strand = Plus / Minus

                                                                        
Query: 100  atggatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactga 159
            |||| |||||||| |||||| | |||||||| |  |||||||||| ||| ||| |   ||
Sbjct: 1107 atgggtagacctcgatgacaccacgagctccgattttcttgacaaccttgtagtcggaga 1048

                               
Query: 160  agccagccttggtgaagat 178
            ||||||||||||| |||||
Sbjct: 1047 agccagccttggtaaagat 1029

to top

>gb|AC101777.8| Mus musculus chromosome 1, clone RP24-123J3, complete sequence
          Length = 177788

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 34     agagtgagcacacacaacaat 54
              |||||||||||||||||||||
Sbjct: 156171 agagtgagcacacacaacaat 156151

to top

>gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P15, complete sequence
          Length = 128418

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                         
Query: 99    tatggatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactg 158
             |||||||||||||||| ||   |||||  ||| |||||||| |||||||| ||  |||||
Sbjct: 62299 tatggatagacctcaaagatgcctcgaattcctagcttcttcacaatcttgtaatcactg 62240

                  
Query: 159   aagcc 163
             |||||
Sbjct: 62239 aagcc 62235



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 63/77 (81%)
 Strand = Plus / Plus

                                                                         
Query: 105   tagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactgaagcca 164
             |||||||||||||||  ||||||||| || || || |  ||||| ||| | ||||| |||
Sbjct: 14033 tagacctcaatgacacatcgagctcctagtttgttcatgatcttgtagtcgctgaatcca 14092

                              
Query: 165   gccttggtgaagatctc 181
             || || |||||||||||
Sbjct: 14093 gcattagtgaagatctc 14109



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 121  ctcgagctcccagcttcttgacaatcttatag 152
            |||||||||| ||| |||| ||||||||||||
Sbjct: 8890 ctcgagctccaagcatcttcacaatcttatag 8859

to top

>ref|XM_746399.1| Aspergillus fumigatus Af293 actin-related protein ArpA (Afu4g13390)
           partial mRNA
          Length = 1146

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 184 tccagtccttctcttcccgct 204
           |||||||||||||||||||||
Sbjct: 700 tccagtccttctcttcccgct 680

to top

>ref|XM_501466.1| Yarrowia lipolytica CLIB122, YALI0C05258g predicted mRNA
          Length = 1599

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 168 ttggtgaagatctcgttccagtccttctc 196
           ||||||| |||| ||||||||||||||||
Sbjct: 479 ttggtgatgatcacgttccagtccttctc 451

to top

>gb|AC131072.13| Mus musculus chromosome 1, clone RP23-396F21, complete sequence
          Length = 192542

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 34     agagtgagcacacacaacaat 54
              |||||||||||||||||||||
Sbjct: 174551 agagtgagcacacacaacaat 174571

to top

>dbj|AK109384.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-A06, full
            insert sequence
          Length = 1300

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 63/77 (81%)
 Strand = Plus / Minus

                                                                        
Query: 105  tagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactgaagcca 164
            |||||||||||||||  ||||||||| || || || |  ||||| ||| | ||||| |||
Sbjct: 1184 tagacctcaatgacacatcgagctcctagtttgttcatgatcttgtagtcgctgaatcca 1125

                             
Query: 165  gccttggtgaagatctc 181
            || || |||||||||||
Sbjct: 1124 gcattagtgaagatctc 1108

to top

>gb|AC174827.3| Cavia porcellus clone CH234-477P24, complete sequence
          Length = 156330

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 58    caacatatatgcaagcatatattactttg 86
             ||||| ||||||||||||| |||||||||
Sbjct: 89651 caacacatatgcaagcataaattactttg 89623

to top

>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica
          Length = 3272609

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 168    ttggtgaagatctcgttccagtccttctc 196
              ||||||| |||| ||||||||||||||||
Sbjct: 668163 ttggtgatgatcacgttccagtccttctc 668191

to top

>ref|XM_477999.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1083

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 276 gatccaagcacaatgtctgtgacgatgactttccctcctgcttc 319
           ||||||| |||||  ||| |||| ||||| ||||||||||||||
Sbjct: 902 gatccaaccacaacatctatgacaatgaccttccctcctgcttc 859

to top

>gb|AC134248.3| Mus musculus BAC clone RP23-338G21 from chromosome 9, complete
            sequence
          Length = 206805

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 209  gcctctcgtcatcaccagca 228
            ||||||||||||||||||||
Sbjct: 5546 gcctctcgtcatcaccagca 5565

to top

>ref|XM_989083.1| PREDICTED: Mus musculus transglutaminase 4 (prostate) (Tgm4), mRNA
          Length = 5470

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 209  gcctctcgtcatcaccagca 228
            ||||||||||||||||||||
Sbjct: 1479 gcctctcgtcatcaccagca 1498

to top

>ref|XM_791236.1| PREDICTED: Strongylocentrotus purpuratus similar to HBS1-like protein
            (LOC591684), partial mRNA
          Length = 3640

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 126  gctcccagcttcttgacaat 145
            ||||||||||||||||||||
Sbjct: 3428 gctcccagcttcttgacaat 3409

to top

>emb|AL353701.15| Human DNA sequence from clone RP11-203M2 on chromosome 9 Contains the
             TTF1 gene for transcription termination factor, RNA
             polymerase 1, a novel gene and three CpG islands, complete
             sequence
          Length = 107967

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 323   tggaggaacggccttcctgc 342
             ||||||||||||||||||||
Sbjct: 96735 tggaggaacggccttcctgc 96716

to top

>gb|AC023301.5| Homo sapiens chromosome 18, clone RP11-713C5, complete sequence
          Length = 167190

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 279   ccaagcacaatgtctgtgac 298
             ||||||||||||||||||||
Sbjct: 42236 ccaagcacaatgtctgtgac 42255

to top

>gb|AC091138.6| Homo sapiens chromosome 18, clone RP11-676J15, complete sequence
          Length = 207520

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 279   ccaagcacaatgtctgtgac 298
             ||||||||||||||||||||
Sbjct: 65258 ccaagcacaatgtctgtgac 65239

to top

>gb|AC012495.9| Homo sapiens BAC clone RP11-327F6 from 2, complete sequence
          Length = 215359

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 310   ctcctgcttcacgtggagga 329
             ||||||||||||||||||||
Sbjct: 66490 ctcctgcttcacgtggagga 66509

to top

>dbj|AK035279.1| Mus musculus adult male urinary bladder cDNA, RIKEN full-length
            enriched library, clone:9530008N10 product:similar to
            DORSAL PROSTATE PROTEIN-GLUTAMINE
            GAMMA-GLUTAMYLTRANSFERASE (EC 2.3.2.13) (DORSAL PROSTATE
            TRANSGLUTAMINASE) (DORSAL PROTEIN 1) (DP1) [Rattus
            norvegicus], full insert sequence
          Length = 2768

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 209  gcctctcgtcatcaccagca 228
            ||||||||||||||||||||
Sbjct: 1831 gcctctcgtcatcaccagca 1850

to top

>gb|AC017087.5|AC017087 Homo sapiens BAC clone RP11-495H13 from 4, complete sequence
          Length = 171745

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 60     acatatatgcaagcatatat 79
              ||||||||||||||||||||
Sbjct: 144261 acatatatgcaagcatatat 144280

to top

>emb|BX005328.9| Zebrafish DNA sequence from clone DKEY-63D15 in linkage group 8, complete
              sequence
          Length = 272840

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 50     acaatccacaacatatatgc 69
              ||||||||||||||||||||
Sbjct: 195158 acaatccacaacatatatgc 195139

to top

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                            
Query: 276      gatccaagcacaatgtctgtgacgatgactttccctcctgcttc 319
                ||||||| |||||  ||| |||| ||||| ||||||||||||||
Sbjct: 16261734 gatccaaccacaacatctatgacaatgaccttccctcctgcttc 16261777

to top

>gb|AC087798.10| Homo sapiens 12 BAC RP11-788H18 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 160095

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 62    atatatgcaagcatatatta 81
             ||||||||||||||||||||
Sbjct: 70170 atatatgcaagcatatatta 70151

to top

>gb|AF486627.1| Mus musculus experimental autoimmune prostatitis antigen 1 (Eapa1)
            mRNA, complete cds
          Length = 2303

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 209  gcctctcgtcatcaccagca 228
            ||||||||||||||||||||
Sbjct: 1829 gcctctcgtcatcaccagca 1848

to top

>dbj|AP003916.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1634_H04
          Length = 151699

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                         
Query: 276   gatccaagcacaatgtctgtgacgatgactttccctcctgcttc 319
             ||||||| |||||  ||| |||| ||||| ||||||||||||||
Sbjct: 82172 gatccaaccacaacatctatgacaatgaccttccctcctgcttc 82215

to top

>dbj|AK106179.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-C11, full
            insert sequence
          Length = 1362

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 121  ctcgagctcccagcttcttgacaatcttatag 152
            |||||||||| ||| |||| ||||||||||||
Sbjct: 1134 ctcgagctccaagcatcttcacaatcttatag 1103

to top

>dbj|AK059770.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-H05, full
            insert sequence
          Length = 1264

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 121  ctcgagctcccagcttcttgacaatcttatag 152
            |||||||||| ||| |||| ||||||||||||
Sbjct: 1139 ctcgagctccaagcatcttcacaatcttatag 1108

to top

>dbj|AP001458.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-831H9, complete
             sequence
          Length = 177433

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 151   agccactgaagccagccttg 170
             ||||||||||||||||||||
Sbjct: 58859 agccactgaagccagccttg 58840

to top

>gb|AC133650.4| Mus musculus BAC clone RP23-453B15 from 9, complete sequence
          Length = 170607

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 209    gcctctcgtcatcaccagca 228
              ||||||||||||||||||||
Sbjct: 127119 gcctctcgtcatcaccagca 127138

to top

>ref|NM_177911.2| Mus musculus transglutaminase 4 (prostate) (Tgm4), mRNA
          Length = 2768

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 209  gcctctcgtcatcaccagca 228
            ||||||||||||||||||||
Sbjct: 1831 gcctctcgtcatcaccagca 1850

to top

>emb|AL672285.8| Mouse DNA sequence from clone RP23-45G5 on chromosome X, complete
              sequence
          Length = 164443

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 60     acatatatgcaagcatatat 79
              ||||||||||||||||||||
Sbjct: 129278 acatatatgcaagcatatat 129297

to top

>emb|AL805949.4| Mouse DNA sequence from clone RP23-424K9 on chromosome 4, complete
             sequence
          Length = 193704

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 62    atatatgcaagcatatatta 81
             ||||||||||||||||||||
Sbjct: 56680 atatatgcaagcatatatta 56699

to top

>emb|AL645736.9| Mouse DNA sequence from clone RP23-474J7 on chromosome 2, complete
             sequence
          Length = 98571

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 153   ccactgaagccagccttggtgaag 176
             ||||||||||||| ||||||||||
Sbjct: 32627 ccactgaagccagacttggtgaag 32650


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,947,351
Number of Sequences: 3902068
Number of extensions: 2947351
Number of successful extensions: 53793
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53568
Number of HSP's gapped (non-prelim): 219
length of query: 345
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 323
effective length of database: 17,147,199,772
effective search space: 5538545526356
effective search space used: 5538545526356
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result