ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet16a07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RPOA_LDVP (Q83017) Replicase polyprotein 1ab (ORF1ab polyprotein... 28 4.5
2CP21A_PIG (P15540) Cytochrome P450 21 (EC 1.14.99.10) (Cytochrom... 28 5.9
3TACY_LISIV (P31831) Ivanolysin precursor (Thiol-activated cytoly... 28 5.9

>RPOA_LDVP (Q83017) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:|
            Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha
            papain-like cysteine proteinase (EC 3.4.22.-)
            (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase
            (EC 3.4.22.-) (PCP1
          Length = 3616

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 130  NGFLQWSSSNCITTQGLVNCNK 65
            NG  Q S+ NC+TT GL  C++
Sbjct: 2196 NGLQQSSALNCLTTSGLERCSR 2217



to top

>CP21A_PIG (P15540) Cytochrome P450 21 (EC 1.14.99.10) (Cytochrome P450 XXI)|
           (Steroid 21-hydroxylase) (21-OHase) (P450-C21)
           (P-450c21)
          Length = 492

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -2

Query: 273 AGVPLHFGEWMLKSLKLPPII 211
           AG  L +G+W L++L LPP++
Sbjct: 14  AGARLLWGQWKLRNLHLPPLV 34



to top

>TACY_LISIV (P31831) Ivanolysin precursor (Thiol-activated cytolysin)|
          Length = 528

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = +2

Query: 197 YYSTLIIGGNFKDFNIHSPKCNGTPAQWY 283
           + +++ + GN ++ NIH+ +C G   +W+
Sbjct: 463 FTTSIYLPGNARNINIHAKECTGLAWEWW 491


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,544,144
Number of Sequences: 219361
Number of extensions: 842453
Number of successful extensions: 1228
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1228
length of database: 80,573,946
effective HSP length: 77
effective length of database: 63,683,149
effective search space used: 1528395576
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top