>RM32_CAEEL (Q04907) Putative 39S ribosomal protein L32, mitochondrial|
           precursor
          Length = 168

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = -1

Query: 235 RDIDPVGHHQN*PACASVRASEPDCD*CTYLDSLLCALVPVNKQLVNANPYV 80
           R + P+ +    PAC+++  S+  CD C      L +   + K+++  NPYV
Sbjct: 73  RLLQPIDNLVTCPACSNIHPSDTICDACYAKVHQLTS--EIKKKMMQYNPYV 122

>P53_CHICK (P10360) Cellular tumor antigen p53 (Tumor suppressor p53)|
          Length = 367

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 297 GSRCL*ARVCVCAGDDSVLEKE 232
           G RC   RVC C G D  +E+E
Sbjct: 252 GRRCFEVRVCACPGRDRKIEEE 273

>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of|
           activating protein 1 and estrogen receptors)
           (Coactivator of AP-1 and ERs) (Transcription coactivator
           CAPER)
          Length = 530

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 127 HKARNLSRYINHNQARSHEQKRKRASSDDDPRDR 228
           H+ R+  R  + +++RSHE+KR ++      RDR
Sbjct: 28  HEERSKKRKKSKSRSRSHERKRSKSKERKRSRDR 61

>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular|
           carcinoma protein 1) (Splicing factor HCC1)
          Length = 530

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 127 HKARNLSRYINHNQARSHEQKRKRASSDDDPRDR 228
           H+ R+  R  + +++RSHE+KR ++      RDR
Sbjct: 28  HEERSKKRKKSKSRSRSHERKRSKSKERKRSRDR 61

>CPSF6_BRARE (Q6NWC6) Cleavage and polyadenylation specificity factor 6|
          Length = 545

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 127 HKARNLSRYINHNQARSHEQKRKRASSDDDPRDR 228
           HK+R+  R+ ++ + RS E+ R R    D  RDR
Sbjct: 503 HKSRSRDRHEDYYRERSRERDRHRERDRDRERDR 536


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,501,098
Number of Sequences: 219361
Number of extensions: 831387
Number of successful extensions: 1897
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1895
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)