ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet15f03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ELF1_DROME (P13002) Protein grainyhead (Protein grainy-head) (DN... 30 1.7
2HR4_DROME (Q9W539) Hormone receptor 4 (dHR4) 28 4.9

>ELF1_DROME (P13002) Protein grainyhead (Protein grainy-head) (DNA-binding|
           protein ELF-1) (Element I-binding activity)
           (Transcription factor NTF-1)
          Length = 1333

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +3

Query: 69  ITVRYRNKDTDETPLEHQRHRAL*T*RQEQLHHQELSGHHADGAPSEGSTP 221
           +T  + ++   +   +HQ+ +      Q+Q HHQ+   H  DG  + G+TP
Sbjct: 741 LTSVHHHQQQQQQQQQHQQQQ------QQQQHHQQQQHHSQDGKSNGGATP 785



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>HR4_DROME (Q9W539) Hormone receptor 4 (dHR4)|
          Length = 1518

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 105  TPLEHQRHRAL*T*RQEQLHHQELSGHH 188
            +PL H  H+   +   +Q HH +LS HH
Sbjct: 1060 SPLHHHHHQGHQSHHAQQQHHPQLSPHH 1087


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,600,882
Number of Sequences: 219361
Number of extensions: 380266
Number of successful extensions: 866
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 80,573,946
effective HSP length: 51
effective length of database: 69,386,535
effective search space used: 1665276840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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