ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet14e05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC007937.18| Mus musculus chromosome 10, clone RP21-536F4, co... 44 0.27
2gb|AC158618.5| Mus musculus 10 BAC RP23-280M4 (Roswell Park Canc... 44 0.27
3gb|AC153892.12| Mus musculus 10 BAC RP23-113O12 (Roswell Park Ca... 44 0.27
4gb|AC146277.2| Pan troglodytes BAC clone CH251-17J20 from X, com... 42 1.1
5gb|AC146276.2| Pan troglodytes BAC clone CH251-149B14 from X, co... 42 1.1
6gb|AC144386.2| Pan troglodytes BAC clone CH251-313C12 from X, co... 42 1.1
7gb|AC147140.4| Pan troglodytes BAC clone CH251-329N7 from Y, com... 42 1.1
8gb|AC147119.2| Pan troglodytes BAC clone CH251-518N19 from Y, co... 42 1.1
9gb|AC147112.2| Pan troglodytes BAC clone CH251-555D17 from Y, co... 42 1.1
10emb|AL132792.2|DMBR19J1 Drosophila melanogaster BAC clone BACR19J1 42 1.1
11emb|CR318590.4| Zebrafish DNA sequence from clone CH211-227G21 i... 42 1.1
12gb|AC103548.8| Drosophila melanogaster X BAC RP98-19J1 (Roswell ... 42 1.1
13gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 42 1.1
14gb|AC146461.4| Pan troglodytes BAC clone CH251-49H18 from chromo... 42 1.1
15gb|AC013467.8| Homo sapiens BAC clone RP11-451F14 from 2, comple... 42 1.1
16gb|AC007126.6|AC007126 Homo sapiens chromosome 4 clone C0496D08,... 42 1.1
17emb|BX511140.4| Zebrafish DNA sequence from clone DKEY-264G21 in... 42 1.1
18gb|AE003418.4| Drosophila melanogaster chromosome X, section 2 o... 42 1.1
19gb|AC139574.4| Mus musculus BAC clone RP23-477I8 from chromosome... 40 4.3
20gb|AC157583.9| Mus musculus chromosome 15, clone RP24-367L4, com... 40 4.3
21emb|CR848718.8| Zebrafish DNA sequence from clone DKEY-5N8 in li... 40 4.3
22emb|AL450083.11| Human DNA sequence from clone RP11-514P7 on chr... 40 4.3
23emb|CR380955.1| Candida glabrata strain CBS138 chromosome I comp... 40 4.3
24gb|AC103925.2| Homo sapiens chromosome 1 clone RP11-567E21, comp... 40 4.3
25dbj|AB234024.1| Paralichthys olivaceus TLR9 gene for Toll-like r... 40 4.3
26dbj|AB234023.1| Paralichthys olivaceus TLR9 mRNA for Toll-like r... 40 4.3
27gb|AC087182.12| Oryza sativa chromosome 10 BAC OSJNBa0029C15 gen... 40 4.3
28dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
29emb|AL844591.6| Mouse DNA sequence from clone RP23-414J11 on chr... 40 4.3
30gb|AC119427.3| Homo sapiens chromosome 1 clone RP11-27G14, compl... 40 4.3
31gb|AC112957.14| Mus musculus chromosome 15, clone RP23-418C6, co... 40 4.3
32gb|AC126275.3| Mus musculus BAC clone RP23-111N17 from 14, compl... 40 4.3
33emb|AL672129.4| Zebrafish DNA sequence from clone BUSM1-104F18 i... 40 4.3
34emb|AL358333.4|CNS05TE4 Human chromosome 14 DNA sequence BAC R-4... 40 4.3
35emb|Z98266.1|HSZ98266 Homo sapiens gene encoding plakophilin (ex... 40 4.3
36gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.3
37emb|AL935307.9| Zebrafish DNA sequence from clone DKEY-63P22, co... 40 4.3
38emb|AL845169.12| Mouse DNA sequence from clone RP23-254K17 on ch... 40 4.3
39tpd|BR000122.1| TPA: TPA_exp: Ciona intestinalis Ci-ZF(U1like)-1... 40 4.3
40gb|AC159106.2| Mus musculus chromosome 14 clone RP23-244I11, com... 40 4.3 
>gb|AC007937.18| Mus musculus chromosome 10, clone RP21-536F4, complete sequence
          Length = 205015

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 172   ggagcagttagttagctcacag 193
             ||||||||||||||||||||||
Sbjct: 72095 ggagcagttagttagctcacag 72074
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>gb|AC158618.5| Mus musculus 10 BAC RP23-280M4 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 235639

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 172   ggagcagttagttagctcacag 193
             ||||||||||||||||||||||
Sbjct: 46634 ggagcagttagttagctcacag 46613
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>gb|AC153892.12| Mus musculus 10 BAC RP23-113O12 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 197426

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 172   ggagcagttagttagctcacag 193
             ||||||||||||||||||||||
Sbjct: 47679 ggagcagttagttagctcacag 47700
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>gb|AC146277.2| Pan troglodytes BAC clone CH251-17J20 from X, complete sequence
          Length = 160219

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 4      agtacaataataaataaataa 24
              |||||||||||||||||||||
Sbjct: 110358 agtacaataataaataaataa 110338
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>gb|AC146276.2| Pan troglodytes BAC clone CH251-149B14 from X, complete sequence
          Length = 180335

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 4     agtacaataataaataaataa 24
             |||||||||||||||||||||
Sbjct: 87782 agtacaataataaataaataa 87802
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>gb|AC144386.2| Pan troglodytes BAC clone CH251-313C12 from X, complete sequence
          Length = 202661

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 4      agtacaataataaataaataa 24
              |||||||||||||||||||||
Sbjct: 182537 agtacaataataaataaataa 182557
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>gb|AC147140.4| Pan troglodytes BAC clone CH251-329N7 from Y, complete sequence
          Length = 149061

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 4     agtacaataataaataaataa 24
             |||||||||||||||||||||
Sbjct: 50951 agtacaataataaataaataa 50931
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>gb|AC147119.2| Pan troglodytes BAC clone CH251-518N19 from Y, complete sequence
          Length = 241976

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 4     agtacaataataaataaataa 24
             |||||||||||||||||||||
Sbjct: 45358 agtacaataataaataaataa 45338
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>gb|AC147112.2| Pan troglodytes BAC clone CH251-555D17 from Y, complete sequence
          Length = 183344

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 4     agtacaataataaataaataa 24
             |||||||||||||||||||||
Sbjct: 29443 agtacaataataaataaataa 29463
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>emb|AL132792.2|DMBR19J1 Drosophila melanogaster BAC clone BACR19J1
          Length = 95463

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 187   ctcacagcaacacgcagcttg 207
             |||||||||||||||||||||
Sbjct: 39094 ctcacagcaacacgcagcttg 39074
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>emb|CR318590.4| Zebrafish DNA sequence from clone CH211-227G21 in linkage group 19,
              complete sequence
          Length = 169599

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 4      agtacaataataaataaataa 24
              |||||||||||||||||||||
Sbjct: 142311 agtacaataataaataaataa 142331
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>gb|AC103548.8| Drosophila melanogaster X BAC RP98-19J1 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 182490

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 187   ctcacagcaacacgcagcttg 207
             |||||||||||||||||||||
Sbjct: 50557 ctcacagcaacacgcagcttg 50537
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 4        agtacaataataaataaataa 24
                |||||||||||||||||||||
Sbjct: 10273303 agtacaataataaataaataa 10273283



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 4       agtacaataataaataaataa 24
               |||||||||||||||||||||
Sbjct: 5399382 agtacaataataaataaataa 5399402



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 4       agtacaataataaataaataa 24
               |||||||||||||||||||||
Sbjct: 3986110 agtacaataataaataaataa 3986130
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>gb|AC146461.4| Pan troglodytes BAC clone CH251-49H18 from chromosome y, complete
             sequence
          Length = 170814

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 4     agtacaataataaataaataa 24
             |||||||||||||||||||||
Sbjct: 61113 agtacaataataaataaataa 61133
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>gb|AC013467.8| Homo sapiens BAC clone RP11-451F14 from 2, complete sequence
          Length = 172966

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 9      aataataaataaataacggga 29
              |||||||||||||||||||||
Sbjct: 163723 aataataaataaataacggga 163743
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>gb|AC007126.6|AC007126 Homo sapiens chromosome 4 clone C0496D08, complete sequence
          Length = 218698

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 4      agtacaataataaataaataa 24
              |||||||||||||||||||||
Sbjct: 117255 agtacaataataaataaataa 117275
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>emb|BX511140.4| Zebrafish DNA sequence from clone DKEY-264G21 in linkage group 20,
             complete sequence
          Length = 166153

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 9     aataataaataaataacgggacaaa 33
             ||||||||||||||||| |||||||
Sbjct: 64145 aataataaataaataactggacaaa 64121
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>gb|AE003418.4| Drosophila melanogaster chromosome X, section 2 of 74 of the complete
              sequence
          Length = 315092

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 187    ctcacagcaacacgcagcttg 207
              |||||||||||||||||||||
Sbjct: 188562 ctcacagcaacacgcagcttg 188542
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>gb|AC139574.4| Mus musculus BAC clone RP23-477I8 from chromosome 15, complete
            sequence
          Length = 190948

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 5    gtacaataataaataaataa 24
            ||||||||||||||||||||
Sbjct: 1583 gtacaataataaataaataa 1602
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>gb|AC157583.9| Mus musculus chromosome 15, clone RP24-367L4, complete sequence
          Length = 185401

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 6      tacaataataaataaataac 25
              ||||||||||||||||||||
Sbjct: 129307 tacaataataaataaataac 129326
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>emb|CR848718.8| Zebrafish DNA sequence from clone DKEY-5N8 in linkage group 9, complete
              sequence
          Length = 253450

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 2      atagtacaataataaataaa 21
              ||||||||||||||||||||
Sbjct: 240608 atagtacaataataaataaa 240627
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>emb|AL450083.11| Human DNA sequence from clone RP11-514P7 on chromosome X, complete
             sequence
          Length = 169494

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     gtacaataataaataaataa 24
             ||||||||||||||||||||
Sbjct: 57237 gtacaataataaataaataa 57256
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>emb|CR380955.1| Candida glabrata strain CBS138 chromosome I complete sequence
          Length = 1089401

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 81     atggacatctccaacaacaa 100
              ||||||||||||||||||||
Sbjct: 395443 atggacatctccaacaacaa 395462
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>gb|AC103925.2| Homo sapiens chromosome 1 clone RP11-567E21, complete sequence
          Length = 175291

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 49    cccctactggagagagattt 68
             ||||||||||||||||||||
Sbjct: 57629 cccctactggagagagattt 57610
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>dbj|AB234024.1| Paralichthys olivaceus TLR9 gene for Toll-like receptor 9, complete
            cds
          Length = 4683

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 82   tggacatctccaacaacaac 101
            ||||||||||||||||||||
Sbjct: 2497 tggacatctccaacaacaac 2516
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>dbj|AB234023.1| Paralichthys olivaceus TLR9 mRNA for Toll-like receptor 9, complete
            cds
          Length = 3637

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 82   tggacatctccaacaacaac 101
            ||||||||||||||||||||
Sbjct: 2050 tggacatctccaacaacaac 2069
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>gb|AC087182.12| Oryza sativa chromosome 10 BAC OSJNBa0029C15 genomic sequence, complete
             sequence
          Length = 148816

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 6     tacaataataaataaataacggga 29
             |||| |||||||||||||||||||
Sbjct: 68692 tacattaataaataaataacggga 68715
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 6        tacaataataaataaataacggga 29
                |||| |||||||||||||||||||
Sbjct: 17863349 tacattaataaataaataacggga 17863326
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>emb|AL844591.6| Mouse DNA sequence from clone RP23-414J11 on chromosome 2, complete
              sequence
          Length = 215003

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 5      gtacaataataaataaataa 24
              ||||||||||||||||||||
Sbjct: 177589 gtacaataataaataaataa 177570
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>gb|AC119427.3| Homo sapiens chromosome 1 clone RP11-27G14, complete sequence
          Length = 181148

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 49    cccctactggagagagattt 68
             ||||||||||||||||||||
Sbjct: 43010 cccctactggagagagattt 43029
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>gb|AC112957.14| Mus musculus chromosome 15, clone RP23-418C6, complete sequence
          Length = 186051

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     gtacaataataaataaataa 24
             ||||||||||||||||||||
Sbjct: 31821 gtacaataataaataaataa 31802
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>gb|AC126275.3| Mus musculus BAC clone RP23-111N17 from 14, complete sequence
          Length = 211542

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     gtacaataataaataaataa 24
             ||||||||||||||||||||
Sbjct: 31258 gtacaataataaataaataa 31239
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>emb|AL672129.4| Zebrafish DNA sequence from clone BUSM1-104F18 in linkage group 9,
             complete sequence
          Length = 93533

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 2     atagtacaataataaataaa 21
             ||||||||||||||||||||
Sbjct: 63049 atagtacaataataaataaa 63068
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>emb|AL358333.4|CNS05TE4 Human chromosome 14 DNA sequence BAC R-463J10 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 188549

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 4     agtacaataataaataaata 23
             ||||||||||||||||||||
Sbjct: 33925 agtacaataataaataaata 33944
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>emb|Z98266.1|HSZ98266 Homo sapiens gene encoding plakophilin (exons 1-13)
          Length = 49999

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 49    cccctactggagagagattt 68
             ||||||||||||||||||||
Sbjct: 11170 cccctactggagagagattt 11189
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 6        tacaataataaataaataacggga 29
                |||| |||||||||||||||||||
Sbjct: 17872602 tacattaataaataaataacggga 17872579
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>emb|AL935307.9| Zebrafish DNA sequence from clone DKEY-63P22, complete sequence
          Length = 234744

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 2      atagtacaataataaataaa 21
              ||||||||||||||||||||
Sbjct: 135106 atagtacaataataaataaa 135087
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>emb|AL845169.12| Mouse DNA sequence from clone RP23-254K17 on chromosome X, complete
             sequence
          Length = 109887

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     gtacaataataaataaataa 24
             ||||||||||||||||||||
Sbjct: 22650 gtacaataataaataaataa 22669
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>tpd|BR000122.1| TPA: TPA_exp: Ciona intestinalis Ci-ZF(U1like)-1 mRNA for zinc
           finger protein, complete cds
          Length = 1170

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 93  aacaacaacacgcaacaaac 112
           ||||||||||||||||||||
Sbjct: 215 aacaacaacacgcaacaaac 234
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>gb|AC159106.2| Mus musculus chromosome 14 clone RP23-244I11, complete sequence
          Length = 168884

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 5      gtacaataataaataaataa 24
              ||||||||||||||||||||
Sbjct: 145900 gtacaataataaataaataa 145881


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,753,966
Number of Sequences: 3902068
Number of extensions: 4753966
Number of successful extensions: 152699
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 152464
Number of HSP's gapped (non-prelim): 235
length of query: 323
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 301
effective length of database: 17,147,199,772
effective search space: 5161307131372
effective search space used: 5161307131372
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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