ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet14d10 |
|---|---|
| Clone Library Name | barley_pub |
>RL18A_ORYSA (Q943F3) 60S ribosomal protein L18a| Length = 178 Score = 92.0 bits (227), Expect = 3e-19 Identities = 42/48 (87%), Positives = 45/48 (93%) Frame = -1 Query: 323 VDFKLCKRDNTKQFHNSKIKFPLVYQKVRPPTRKLKTTYKATRPNLFM 180 V FKLCKRDNTKQFH S IKFPLVY+KVRPPTRKLKTT+KA+RPNLFM Sbjct: 131 VHFKLCKRDNTKQFHKSDIKFPLVYRKVRPPTRKLKTTFKASRPNLFM 178
>RL18A_ARATH (P51418) 60S ribosomal protein L18a-1| Length = 178 Score = 87.0 bits (214), Expect = 1e-17 Identities = 39/48 (81%), Positives = 45/48 (93%) Frame = -1 Query: 323 VDFKLCKRDNTKQFHNSKIKFPLVYQKVRPPTRKLKTTYKATRPNLFM 180 V KLCKR++TKQFHNSKIKFPLV++KVRPP+RKLKTTYKA +PNLFM Sbjct: 131 VPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLKTTYKANKPNLFM 178
>RL18B_ARATH (Q9LUD4) 60S ribosomal protein L18a-2| Length = 178 Score = 85.9 bits (211), Expect = 2e-17 Identities = 39/48 (81%), Positives = 45/48 (93%) Frame = -1 Query: 323 VDFKLCKRDNTKQFHNSKIKFPLVYQKVRPPTRKLKTTYKATRPNLFM 180 V KLCKR+ TKQFHNSKIKFPLV++KVRPP+RKLKTTYKA++PNLFM Sbjct: 131 VPAKLCKREITKQFHNSKIKFPLVFRKVRPPSRKLKTTYKASKPNLFM 178
>RL18A_CASSA (Q9ATF5) 60S ribosomal protein L18a| Length = 178 Score = 81.6 bits (200), Expect = 4e-16 Identities = 36/45 (80%), Positives = 43/45 (95%) Frame = -1 Query: 314 KLCKRDNTKQFHNSKIKFPLVYQKVRPPTRKLKTTYKATRPNLFM 180 KLCKR+++KQFHNSKIKFPLV +K+RPP+RKLKT YKA+RPNLFM Sbjct: 134 KLCKRESSKQFHNSKIKFPLVTRKIRPPSRKLKTHYKASRPNLFM 178
>RL18A_RAT (P62718) 60S ribosomal protein L18a| Length = 176 Score = 40.8 bits (94), Expect = 9e-04 Identities = 20/42 (47%), Positives = 27/42 (64%) Frame = -1 Query: 308 CKRDNTKQFHNSKIKFPLVYQKVRPPTRKLKTTYKATRPNLF 183 C+R KQFH+SKIKFPL ++ +R R+ K + RPN F Sbjct: 137 CRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175
>RL18A_MOUSE (P62717) 60S ribosomal protein L18a| Length = 176 Score = 40.8 bits (94), Expect = 9e-04 Identities = 20/42 (47%), Positives = 27/42 (64%) Frame = -1 Query: 308 CKRDNTKQFHNSKIKFPLVYQKVRPPTRKLKTTYKATRPNLF 183 C+R KQFH+SKIKFPL ++ +R R+ K + RPN F Sbjct: 137 CRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175
>RL18A_HUMAN (Q02543) 60S ribosomal protein L18a| Length = 176 Score = 40.8 bits (94), Expect = 9e-04 Identities = 20/42 (47%), Positives = 27/42 (64%) Frame = -1 Query: 308 CKRDNTKQFHNSKIKFPLVYQKVRPPTRKLKTTYKATRPNLF 183 C+R KQFH+SKIKFPL ++ +R R+ K + RPN F Sbjct: 137 CRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175
>RL18A_BRARE (Q7ZWJ4) 60S ribosomal protein L18a| Length = 176 Score = 40.4 bits (93), Expect = 0.001 Identities = 20/42 (47%), Positives = 27/42 (64%) Frame = -1 Query: 308 CKRDNTKQFHNSKIKFPLVYQKVRPPTRKLKTTYKATRPNLF 183 C+R KQFH+SKIKFPL ++ +R R+ K + RPN F Sbjct: 137 CRRPAIKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175
>RL18A_SALSA (O57561) 60S ribosomal protein L18a| Length = 176 Score = 38.5 bits (88), Expect = 0.004 Identities = 19/42 (45%), Positives = 26/42 (61%) Frame = -1 Query: 308 CKRDNTKQFHNSKIKFPLVYQKVRPPTRKLKTTYKATRPNLF 183 C+R KQFH+SKIKFPL ++ +R R+ + RPN F Sbjct: 137 CRRPAIKQFHDSKIKFPLPHRVLR---RQHNPRFTTKRPNTF 175
>RL18A_ICTPU (Q90YU9) 60S ribosomal protein L18a| Length = 176 Score = 37.7 bits (86), Expect = 0.007 Identities = 19/42 (45%), Positives = 26/42 (61%) Frame = -1 Query: 308 CKRDNTKQFHNSKIKFPLVYQKVRPPTRKLKTTYKATRPNLF 183 C+R KQFH+SKIKFPL ++ +R R+ K + RP F Sbjct: 137 CRRAAIKQFHDSKIKFPLPHRVLR---RQHKPRFTTRRPQTF 175
>RL18A_DROME (P41093) 60S ribosomal protein L18a| Length = 177 Score = 33.5 bits (75), Expect = 0.14 Identities = 16/29 (55%), Positives = 20/29 (68%) Frame = -1 Query: 305 KRDNTKQFHNSKIKFPLVYQKVRPPTRKL 219 +R + KQFH+SKIKFPLV + RKL Sbjct: 138 RRVHVKQFHDSKIKFPLVQRVHHKGNRKL 166
>RL18A_SPOFR (Q8WQI7) 60S ribosomal protein L18a| Length = 177 Score = 32.7 bits (73), Expect = 0.23 Identities = 17/42 (40%), Positives = 22/42 (52%) Frame = -1 Query: 308 CKRDNTKQFHNSKIKFPLVYQKVRPPTRKLKTTYKATRPNLF 183 C+R KQFHNS I+FPL R K T+ RP+ + Sbjct: 137 CRRPQVKQFHNSTIRFPL---PKRVHHHKRLNTFAYKRPSTY 175
>PQE1_CAEEL (Q10124) Putative RNA exonuclease pqe-1 (PolyQ enhancer protein 1)| Length = 1647 Score = 32.7 bits (73), Expect = 0.23 Identities = 17/39 (43%), Positives = 19/39 (48%) Frame = -3 Query: 300 GQHEAVPQLEDQVPAGVPEGAPPHPQAQDHLQGHKAQPL 184 G H A PQ+ Q PA P GA H Q H H+ PL Sbjct: 315 GPHGAAPQMTQQAPARGPSGAAQHAQ-NAHRMTHQQVPL 352 Score = 27.7 bits (60), Expect = 7.5 Identities = 16/51 (31%), Positives = 22/51 (43%) Frame = -3 Query: 318 LQAVQEGQHEAVPQLEDQVPAGVPEGAPPHPQAQDHLQGHKAQPLHVSGSP 166 LQA +G H PQ+ Q P GA HP + P+H++ P Sbjct: 352 LQAPVQGPHRGAPQMAQQPG---PHGAAQHPSS------GTVAPMHITSLP 393
>BAZ2A_HUMAN (Q9UIF9) Bromodomain adjacent to zinc finger domain 2A (Transcription| termination factor I-interacting protein 5) (TTF-I-interacting protein 5) (Tip5) (hWALp3) Length = 1878 Score = 31.6 bits (70), Expect = 0.52 Identities = 21/52 (40%), Positives = 25/52 (48%) Frame = -3 Query: 318 LQAVQEGQHEAVPQLEDQVPAGVPEGAPPHPQAQDHLQGHKAQPLHVSGSPL 163 L++ GQ PQ + Q A + A P PQ Q LQ HK L GSPL Sbjct: 1178 LKSPVRGQDSEQPQAQLQPEAQLHAPAQPQPQLQLQLQSHKGF-LEQEGSPL 1228
>CCR4_YEAST (P31384) Glucose-repressible alcohol dehydrogenase transcriptional| effector (EC 3.1.-.-) (Cytoplasmic deadenylase) (Carbon catabolite repressor protein 4) Length = 837 Score = 30.8 bits (68), Expect = 0.89 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 3/45 (6%) Frame = -3 Query: 315 QAVQEGQHEAVPQLEDQVPAGV---PEGAPPHPQAQDHLQGHKAQ 190 Q Q+ Q +A Q + QVP P+ APP Q D Q H A+ Sbjct: 190 QQAQQAQQQAQQQAQQQVPGPFGPGPQAAPPALQPTDFQQSHIAE 234
>IF4G1_HUMAN (Q04637) Eukaryotic translation initiation factor 4 gamma 1| (eIF-4-gamma 1) (eIF-4G1) (eIF-4G 1) (p220) Length = 1600 Score = 30.4 bits (67), Expect = 1.2 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 7/53 (13%) Frame = -3 Query: 318 LQAVQEGQHEAVPQLEDQVPAGV---PE----GAPPHPQAQDHLQGHKAQPLH 181 L A +E + AVP++E+Q PAG PE G PP P+ D K +H Sbjct: 531 LDAFKEA-NPAVPEVENQPPAGSNPGPESEGSGVPPRPEEADETWDSKEDKIH 582
>FTSK_SALTY (Q8ZQD5) DNA translocase ftsK| Length = 1351 Score = 30.0 bits (66), Expect = 1.5 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 3/53 (5%) Frame = -3 Query: 315 QAVQEGQHEAVPQLEDQVPAGVPEGAPPHPQAQDHLQGHKA---QPLHVSGSP 166 Q E Q PQ + V A PEG PHPQ + A QP+ V+ +P Sbjct: 353 QPTVEWQPVPGPQTGEPVIAPAPEGYQPHPQYAQPQEAQSAPWQQPVPVASAP 405
>FTSK_SALTI (Q8Z814) DNA translocase ftsK| Length = 1343 Score = 30.0 bits (66), Expect = 1.5 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 3/53 (5%) Frame = -3 Query: 315 QAVQEGQHEAVPQLEDQVPAGVPEGAPPHPQAQDHLQGHKA---QPLHVSGSP 166 Q E Q PQ + V A PEG PHPQ + A QP+ V+ +P Sbjct: 353 QPTVEWQPVPGPQTGEPVIAPAPEGYQPHPQYAQPQEAQSAPWQQPVPVASAP 405
>ARID2_HUMAN (Q68CP9) AT-rich interactive domain-containing protein 2 (ARID| domain-containing protein 2) (BRG1-associated factor 200) (BAF200) Length = 1835 Score = 29.6 bits (65), Expect = 2.0 Identities = 18/51 (35%), Positives = 24/51 (47%) Frame = -3 Query: 312 AVQEGQHEAVPQLEDQVPAGVPEGAPPHPQAQDHLQGHKAQPLHVSGSPLP 160 AVQ+ Q +++ VP P PP P Q Q + +QP SGS P Sbjct: 1573 AVQQKQQHPPTYVQNVVPQNTP--MPPSPAVQVQGQPNSSQPSPFSGSSQP 1621
>ULK2_MOUSE (Q9QY01) Serine/threonine-protein kinase ULK2 (EC 2.7.11.1)| (Unc-51-like kinase 2) (Serine/threonine-protein kinase Unc51.2) Length = 1037 Score = 28.9 bits (63), Expect = 3.4 Identities = 12/22 (54%), Positives = 15/22 (68%) Frame = -3 Query: 213 HLQGHKAQPLHVSGSPLPTVLA 148 H QGH+A+ H SGSP+P A Sbjct: 495 HPQGHEARSRHSSGSPVPQTQA 516
>ARFF_ARATH (Q9ZTX8) Auxin response factor 6| Length = 933 Score = 28.9 bits (63), Expect = 3.4 Identities = 15/42 (35%), Positives = 19/42 (45%) Frame = -3 Query: 315 QAVQEGQHEAVPQLEDQVPAGVPEGAPPHPQAQDHLQGHKAQ 190 Q Q+ Q + Q + Q GVPE P QAQ H +Q Sbjct: 518 QLSQQQQQQLSQQQQQQAYLGVPETHQPQSQAQSQSNNHLSQ 559
>CNOT3_HUMAN (O75175) CCR4-NOT transcription complex subunit 3 (CCR4-associated| factor 3) Length = 753 Score = 28.9 bits (63), Expect = 3.4 Identities = 21/67 (31%), Positives = 25/67 (37%), Gaps = 13/67 (19%) Frame = -3 Query: 321 GLQAVQEGQHEAVPQLEDQVPAGVPEGAP-----------PHPQAQDHLQGHKAQPL--H 181 G + V QH P + P+G P A P P A G KA P H Sbjct: 304 GSKPVHSNQHPQSPAVPPTYPSGPPPAASALSTTPGNNGVPAPAAPPSALGPKASPAPSH 363 Query: 180 VSGSPLP 160 SG+P P Sbjct: 364 NSGTPAP 370
>NOS2_CANFA (O62699) Nitric oxide synthase, inducible (EC 1.14.13.39) (NOS type| II) (Inducible NO synthase) (Inducible NOS) (iNOS) Length = 1154 Score = 28.5 bits (62), Expect = 4.4 Identities = 14/30 (46%), Positives = 16/30 (53%) Frame = -3 Query: 249 PEGAPPHPQAQDHLQGHKAQPLHVSGSPLP 160 P GA P P QD L+ HK H + SP P Sbjct: 31 PPGATPSPSTQDDLKNHK----HHNDSPQP 56
>ZEP1_MOUSE (Q03172) Zinc finger protein 40 (Transcription factor alphaA-CRYBP1)| (Alpha A-crystallin-binding protein I) (Alpha A-CRYBP1) Length = 2688 Score = 28.5 bits (62), Expect = 4.4 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 3/45 (6%) Frame = -3 Query: 312 AVQE---GQHEAVPQLEDQVPAGVPEGAPPHPQAQDHLQGHKAQP 187 AVQ+ G AV QL Q A + PHP +QD Q QP Sbjct: 2313 AVQDSSVGLPPAVAQLNPQPAARISSSVSPHPDSQDQKQQIILQP 2357
>ZEP1_HUMAN (P15822) Zinc finger protein 40 (Human immunodeficiency virus type I| enhancer-binding protein 1) (HIV-EP1) (Major histocompatibility complex-binding protein 1) (MBP-1) (Positive regulatory domain II-binding factor 1) (PRDII-BF1) Length = 2717 Score = 28.1 bits (61), Expect = 5.8 Identities = 16/43 (37%), Positives = 19/43 (44%) Frame = -3 Query: 288 AVPQLEDQVPAGVPEGAPPHPQAQDHLQGHKAQPLHVSGSPLP 160 A + Q AG+P A PHP Q+ Q QP G P P Sbjct: 2335 AAAEHSPQTAAGMPSVASPHPDPQEQKQQITLQP--TPGLPSP 2375
>RL18A_CAEEL (O44480) 60S ribosomal protein L18a| Length = 180 Score = 28.1 bits (61), Expect = 5.8 Identities = 15/39 (38%), Positives = 21/39 (53%) Frame = -1 Query: 305 KRDNTKQFHNSKIKFPLVYQKVRPPTRKLKTTYKATRPN 189 KR K FH++KI+FPL + R RK + + R N Sbjct: 141 KRAGIKMFHDAKIRFPLPH---RVTKRKNLSVFTTARQN 176
>K1PF_XANCP (P23354) 1-phosphofructokinase (EC 2.7.1.56) (Fructose 1-phosphate| kinase) Length = 318 Score = 28.1 bits (61), Expect = 5.8 Identities = 19/49 (38%), Positives = 24/49 (48%) Frame = -3 Query: 276 LEDQVPAGVPEGAPPHPQAQDHLQGHKAQPLHVSGSPLPTVLACVRV*M 130 L +PAG+PE + QAQ G + L SG+PL LA V M Sbjct: 138 LSGSLPAGLPEDSWAQLQAQASAAGARVL-LDTSGAPLVAALAAAPVAM 185
>BCCP_HAEIN (P43874) Biotin carboxyl carrier protein of acetyl-CoA carboxylase| (BCCP) Length = 155 Score = 28.1 bits (61), Expect = 5.8 Identities = 22/62 (35%), Positives = 23/62 (37%), Gaps = 3/62 (4%) Frame = -3 Query: 312 AVQEGQHEAVPQLEDQVPAGVPEGAPPHPQAQDHLQGHKAQPLHVS---GSPLPTVLACV 142 AVQ V PA VP A P A D L GH + V SP P A V Sbjct: 43 AVQYAAAPVVAPTPAAAPAQVPAAATTAPAASDELSGHLVRSPMVGTFYRSPSPEAKAFV 102 Query: 141 RV 136 V Sbjct: 103 EV 104
>LACC_STAES (Q8CRJ4) Tagatose-6-phosphate kinase (EC 2.7.1.144)| (Phosphotagatokinase) Length = 310 Score = 28.1 bits (61), Expect = 5.8 Identities = 13/33 (39%), Positives = 17/33 (51%) Frame = +2 Query: 74 SVPTENILKVHNQNFHMQNIQTLTHAKTVGSGD 172 S+ +E HNQ F+ NI + VGSGD Sbjct: 222 SLGSEGAFAKHNQKFYKVNIPNIKVVNPVGSGD 254
>LACC_STAEQ (Q5HM37) Tagatose-6-phosphate kinase (EC 2.7.1.144)| (Phosphotagatokinase) Length = 310 Score = 28.1 bits (61), Expect = 5.8 Identities = 13/33 (39%), Positives = 17/33 (51%) Frame = +2 Query: 74 SVPTENILKVHNQNFHMQNIQTLTHAKTVGSGD 172 S+ +E HNQ F+ NI + VGSGD Sbjct: 222 SLGSEGAFAKHNQKFYKVNIPNIKVVNPVGSGD 254
>PRB4S_HUMAN (P10163) Basic salivary proline-rich protein 4 allele S precursor| (Salivary proline-rich protein Po) (Parotid o protein) [Contains: Protein N1; Glycosylated protein A] Length = 247 Score = 27.7 bits (60), Expect = 7.5 Identities = 11/20 (55%), Positives = 12/20 (60%) Frame = -3 Query: 282 PQLEDQVPAGVPEGAPPHPQ 223 PQ PAG P+G PP PQ Sbjct: 213 PQQPQDPPAGKPQGPPPPPQ 232
>YB1D_SCHPO (P87178) Hypothetical protein C3D6.13c in chromosome II| Length = 726 Score = 27.3 bits (59), Expect = 9.8 Identities = 16/41 (39%), Positives = 19/41 (46%) Frame = -3 Query: 195 AQPLHVSGSPLPTVLACVRV*MFCMWKFWLCTLRMFSVGTE 73 A+ HV+G P PT A V KFW LR F + E Sbjct: 573 AKNFHVNGKPSPTRFAWVN------GKFWAQWLRKFDIDIE 607
>PRB4M_HUMAN (P10161) Basic salivary proline-rich protein 4 allele M (Salivary| proline-rich protein Po) (Parotid o protein) [Contains: Peptide P-D] (Fragment) Length = 238 Score = 27.3 bits (59), Expect = 9.8 Identities = 11/20 (55%), Positives = 12/20 (60%) Frame = -3 Query: 282 PQLEDQVPAGVPEGAPPHPQ 223 PQ PAG P+G PP PQ Sbjct: 204 PQQPQAPPAGKPQGPPPPPQ 223
>PRB4L_HUMAN (P10162) Basic salivary proline-rich protein 4 allele L (Salivary| proline-rich protein Po) (Parotid o protein) [Contains: Peptide P-D] (Fragment) Length = 276 Score = 27.3 bits (59), Expect = 9.8 Identities = 11/20 (55%), Positives = 12/20 (60%) Frame = -3 Query: 282 PQLEDQVPAGVPEGAPPHPQ 223 PQ PAG P+G PP PQ Sbjct: 242 PQQPQAPPAGKPQGPPPPPQ 261
>HIS6_NOCFA (Q5YYP3) Imidazole glycerol phosphate synthase subunit hisF (EC| 4.1.3.-) (IGP synthase cyclase subunit) (IGP synthase subunit hisF) (ImGP synthase subunit hisF) (IGPS subunit hisF) Length = 257 Score = 27.3 bits (59), Expect = 9.8 Identities = 17/49 (34%), Positives = 24/49 (48%) Frame = +2 Query: 47 KSCINAAASSVPTENILKVHNQNFHMQNIQTLTHAKTVGSGDPLT*RGW 193 K +N AA + P +L+ ++ F Q I A+TV G P T GW Sbjct: 100 KVSVNTAAIARP--EVLREMSERFGSQCIVLSVDARTVPDGQPDTPSGW 146
>CF23_DROME (Q01522) Chorion transcription factor Cf2, isoform III| Length = 514 Score = 27.3 bits (59), Expect = 9.8 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%) Frame = -3 Query: 318 LQAVQEG---QHEAVPQLEDQVPAGVPEGAPPHPQAQDHLQGHKAQPLH 181 L A Q+G Q EA +DQ+PA P P+ Q H Q +A+ H Sbjct: 189 LAAGQQGFMEQQEAAVTPDDQLPAMAPRDMRLTPEEQHHQQQLQAEHHH 237
>ATR_XENLA (Q9DE14) Serine/threonine-protein kinase atr (EC 2.7.11.1) (Ataxia| telangiectasia and Rad3-related protein) (Xatr) Length = 2654 Score = 27.3 bits (59), Expect = 9.8 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%) Frame = -2 Query: 193 PTSSCERVPTAYCF--SVCKSLNVLHVEVLVMHFENVFSWH*GCCCVDATLD 44 P + + PTA ++ K LNV E+L+ +F+ +FS H C C L+ Sbjct: 1015 PYLAAKASPTASTLIRTIAKQLNVNRREILINNFKYIFS-HLVCSCTKDELE 1065
>CF2_DROME (P20385) Chorion transcription factor Cf2, isoforms I/II| Length = 510 Score = 27.3 bits (59), Expect = 9.8 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%) Frame = -3 Query: 318 LQAVQEG---QHEAVPQLEDQVPAGVPEGAPPHPQAQDHLQGHKAQPLH 181 L A Q+G Q EA +DQ+PA P P+ Q H Q +A+ H Sbjct: 189 LAAGQQGFMEQQEAAVTPDDQLPAMAPRDMRLTPEEQHHQQQLQAEHHH 237 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,380,914 Number of Sequences: 219361 Number of extensions: 689510 Number of successful extensions: 2752 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 2551 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2742 length of database: 80,573,946 effective HSP length: 83 effective length of database: 62,366,983 effective search space used: 1496807592 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
