| Clone Name | rbaet14d09 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB219525.1| Hordeum vulgare HvPIP2;4 mRNA for PIP aquaporin isoform, complete cds Length = 1343 Score = 452 bits (228), Expect = e-124 Identities = 287/308 (93%), Gaps = 1/308 (0%) Strand = Plus / Minus Query: 1 agctcacaaaccgaaccgtacgtacacattgcatttcaaatttcccccc-aagttacctg 59 ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 1233 agctcacgaaccgaaccgtacgtacacattgcatttcaaatttcccccccaagttacctg 1174 Query: 60 gatgcgtacatgacatgacagtacatcatcctcatcattcataaacattacatggaagca 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1173 gatgcgtacatgacatgacagtacatcatcctcatcattcataaacattacatggaagca 1114 Query: 120 aacactgactgacaaaaacacactcgatcggtnnnnnnnncaagcagcaagcgcgggcgg 179 ||||||||||||| || ||||||||||||||| |||||||||||||||||||| Sbjct: 1113 aacactgactgacgaagacacactcgatcggtagagaaaacaagcagcaagcgcgggcgg 1054 Query: 180 cgagccgaggaaagcaaaggcccccgcaaagaccagcaaaatccagggaccccaacggag 239 ||||| |||||||||| || | | |||||||||||||| ||||||||||||| ||||||| Sbjct: 1053 cgagcagaggaaagcagagacgcgcgcaaagaccagcagaatccagggacccgaacggag 994 Query: 240 gcccctctgtcctctgccatatttacagttcatacccctccgaccatctagcggctgccg 299 |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| Sbjct: 993 gcccctctgtcctctgccatatctacagttcatacgcctccgaccatctagcggctgccg 934 Query: 300 aaggaggc 307 |||||||| Sbjct: 933 aaggaggc 926
>gb|AC116395.21| Mus musculus chromosome 14, clone RP23-106K9, complete sequence Length = 218656 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 104 acattacatggaagcaaacac 124 ||||||||||||||||||||| Sbjct: 152543 acattacatggaagcaaacac 152563
>emb|BX004993.16| Zebrafish DNA sequence from clone CH211-163C2 in linkage group 7, complete sequence Length = 150136 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 77 acagtacatcatcctcatcat 97 ||||||||||||||||||||| Sbjct: 125640 acagtacatcatcctcatcat 125660
>gb|AC087380.3| Homo sapiens chromosome 11, clone RP11-454O22, complete sequence Length = 200723 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 115 aagcaaacactgactgacaaaaaca 139 ||||||||||||||||| ||||||| Sbjct: 55962 aagcaaacactgactgaaaaaaaca 55986
>emb|BX323881.7| Zebrafish DNA sequence from clone CH211-274G13 in linkage group 14, complete sequence Length = 157039 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 77 acagtacatcatcctcatcat 97 ||||||||||||||||||||| Sbjct: 128445 acagtacatcatcctcatcat 128425
>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome Length = 5751492 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 78 cagtacatcatcctcatcatt 98 ||||||||||||||||||||| Sbjct: 3820278 cagtacatcatcctcatcatt 3820258
>gb|AF137396.2|AF137396 Homo sapiens ubiquilin 3, HOR 5'Beta14, HOR5'Beta13, HOR5'Beta12, and HOR5'Beta11 genes, complete cds; HOR 5'Beta10 and HOR5'Beta9 pseudogenes, complete sequence; HOR5'Beta8 and HOR5'Beta7 genes, complete cds; CHR11ORF1 and amphiphysin pseudogenes, complete sequence; HOR5'Beta6 and HOR5'Beta5 genes, complete cds; HOR5'Beta4 pseudogene, complete sequence; HOR 5'Beta3 genes, complete cds; HOR5'Beta2 pseudogene, complete sequence; and HOR 5'Beta1 gene, complete cds Length = 219955 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 115 aagcaaacactgactgacaaaaaca 139 ||||||||||||||||| ||||||| Sbjct: 102608 aagcaaacactgactgaaaaaaaca 102584
>emb|Z82265.1|CEF02H6 Caenorhabditis elegans Cosmid F02H6, complete sequence Length = 34107 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 agtacatcatcctcatcatt 98 |||||||||||||||||||| Sbjct: 2425 agtacatcatcctcatcatt 2406
>tpg|BK003523.1| TPA: TPA_inf: Drosophila melanogaster HDC02994 (HDC02994) gene, complete cds Length = 2573 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 cattgcatttcaaatttccc 46 |||||||||||||||||||| Sbjct: 1992 cattgcatttcaaatttccc 1973
>gb|AC092643.2| Homo sapiens BAC clone RP11-393P9 from 4, complete sequence Length = 151902 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 aaatttccccccaagttacc 57 |||||||||||||||||||| Sbjct: 77542 aaatttccccccaagttacc 77561
>gb|AC160646.2| Gallus gallus BAC clone CH261-24P2 from chromosome unknown, complete sequence Length = 212960 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 cacattgcatttcaaatttc 44 |||||||||||||||||||| Sbjct: 26652 cacattgcatttcaaatttc 26633
>gb|AC009202.7| Drosophila melanogaster, chromosome 2L, region 36D-36D, BAC clone BACR06C11, complete sequence Length = 174500 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 cattgcatttcaaatttccc 46 |||||||||||||||||||| Sbjct: 148936 cattgcatttcaaatttccc 148917
>gb|AC011662.1|AC011662 Drosophila melanogaster, chromosome 2L, region 36D-, BAC clones BACR01G10 and BACR05I08, complete sequence Length = 294942 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 cattgcatttcaaatttccc 46 |||||||||||||||||||| Sbjct: 16921 cattgcatttcaaatttccc 16902
>gb|AE003656.2| Drosophila melanogaster chromosome 2L, section 65 of 83 of the complete sequence Length = 251192 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 cattgcatttcaaatttccc 46 |||||||||||||||||||| Sbjct: 179433 cattgcatttcaaatttccc 179414 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,562,437 Number of Sequences: 3902068 Number of extensions: 2562437 Number of successful extensions: 53020 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52990 Number of HSP's gapped (non-prelim): 29 length of query: 307 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 285 effective length of database: 17,147,199,772 effective search space: 4886951935020 effective search space used: 4886951935020 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)