ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet14d09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AB219525.1| Hordeum vulgare HvPIP2;4 mRNA for PIP aquaporin ... 452 e-124
2gb|AC116395.21| Mus musculus chromosome 14, clone RP23-106K9, co... 42 1.0
3emb|BX004993.16| Zebrafish DNA sequence from clone CH211-163C2 i... 42 1.0
4gb|AC087380.3| Homo sapiens chromosome 11, clone RP11-454O22, co... 42 1.0
5emb|BX323881.7| Zebrafish DNA sequence from clone CH211-274G13 i... 42 1.0
6gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome 42 1.0
7gb|AF137396.2|AF137396 Homo sapiens ubiquilin 3, HOR 5'Beta14, H... 42 1.0
8emb|Z82265.1|CEF02H6 Caenorhabditis elegans Cosmid F02H6, comple... 40 4.0
9tpg|BK003523.1| TPA: TPA_inf: Drosophila melanogaster HDC02994 (... 40 4.0
10gb|AC092643.2| Homo sapiens BAC clone RP11-393P9 from 4, complet... 40 4.0
11gb|AC160646.2| Gallus gallus BAC clone CH261-24P2 from chromosom... 40 4.0
12gb|AC009202.7| Drosophila melanogaster, chromosome 2L, region 36... 40 4.0
13gb|AC011662.1|AC011662 Drosophila melanogaster, chromosome 2L, r... 40 4.0
14gb|AE003656.2| Drosophila melanogaster chromosome 2L, section 65... 40 4.0

>dbj|AB219525.1| Hordeum vulgare HvPIP2;4 mRNA for PIP aquaporin isoform, complete cds
          Length = 1343

 Score =  452 bits (228), Expect = e-124
 Identities = 287/308 (93%), Gaps = 1/308 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    agctcacaaaccgaaccgtacgtacacattgcatttcaaatttcccccc-aagttacctg 59
            ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1233 agctcacgaaccgaaccgtacgtacacattgcatttcaaatttcccccccaagttacctg 1174

                                                                        
Query: 60   gatgcgtacatgacatgacagtacatcatcctcatcattcataaacattacatggaagca 119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1173 gatgcgtacatgacatgacagtacatcatcctcatcattcataaacattacatggaagca 1114

                                                                        
Query: 120  aacactgactgacaaaaacacactcgatcggtnnnnnnnncaagcagcaagcgcgggcgg 179
            ||||||||||||| || |||||||||||||||        ||||||||||||||||||||
Sbjct: 1113 aacactgactgacgaagacacactcgatcggtagagaaaacaagcagcaagcgcgggcgg 1054

                                                                        
Query: 180  cgagccgaggaaagcaaaggcccccgcaaagaccagcaaaatccagggaccccaacggag 239
            ||||| |||||||||| || | | |||||||||||||| ||||||||||||| |||||||
Sbjct: 1053 cgagcagaggaaagcagagacgcgcgcaaagaccagcagaatccagggacccgaacggag 994

                                                                        
Query: 240  gcccctctgtcctctgccatatttacagttcatacccctccgaccatctagcggctgccg 299
            |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 993  gcccctctgtcctctgccatatctacagttcatacgcctccgaccatctagcggctgccg 934

                    
Query: 300  aaggaggc 307
            ||||||||
Sbjct: 933  aaggaggc 926



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>gb|AC116395.21| Mus musculus chromosome 14, clone RP23-106K9, complete sequence
          Length = 218656

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 104    acattacatggaagcaaacac 124
              |||||||||||||||||||||
Sbjct: 152543 acattacatggaagcaaacac 152563



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>emb|BX004993.16| Zebrafish DNA sequence from clone CH211-163C2 in linkage group 7,
              complete sequence
          Length = 150136

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 77     acagtacatcatcctcatcat 97
              |||||||||||||||||||||
Sbjct: 125640 acagtacatcatcctcatcat 125660



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>gb|AC087380.3| Homo sapiens chromosome 11, clone RP11-454O22, complete sequence
          Length = 200723

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 115   aagcaaacactgactgacaaaaaca 139
             ||||||||||||||||| |||||||
Sbjct: 55962 aagcaaacactgactgaaaaaaaca 55986



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>emb|BX323881.7| Zebrafish DNA sequence from clone CH211-274G13 in linkage group 14,
              complete sequence
          Length = 157039

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 77     acagtacatcatcctcatcat 97
              |||||||||||||||||||||
Sbjct: 128445 acagtacatcatcctcatcat 128425



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>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 78      cagtacatcatcctcatcatt 98
               |||||||||||||||||||||
Sbjct: 3820278 cagtacatcatcctcatcatt 3820258



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>gb|AF137396.2|AF137396 Homo sapiens ubiquilin 3, HOR 5'Beta14, HOR5'Beta13, HOR5'Beta12, and
              HOR5'Beta11 genes, complete cds; HOR 5'Beta10 and
              HOR5'Beta9 pseudogenes, complete sequence; HOR5'Beta8 and
              HOR5'Beta7 genes, complete cds; CHR11ORF1 and amphiphysin
              pseudogenes, complete sequence; HOR5'Beta6 and HOR5'Beta5
              genes, complete cds; HOR5'Beta4 pseudogene, complete
              sequence; HOR 5'Beta3 genes, complete cds; HOR5'Beta2
              pseudogene, complete sequence; and HOR 5'Beta1 gene,
              complete cds
          Length = 219955

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 115    aagcaaacactgactgacaaaaaca 139
              ||||||||||||||||| |||||||
Sbjct: 102608 aagcaaacactgactgaaaaaaaca 102584



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>emb|Z82265.1|CEF02H6 Caenorhabditis elegans Cosmid F02H6, complete sequence
          Length = 34107

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 79   agtacatcatcctcatcatt 98
            ||||||||||||||||||||
Sbjct: 2425 agtacatcatcctcatcatt 2406



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>tpg|BK003523.1| TPA: TPA_inf: Drosophila melanogaster HDC02994 (HDC02994) gene,
            complete cds
          Length = 2573

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 27   cattgcatttcaaatttccc 46
            ||||||||||||||||||||
Sbjct: 1992 cattgcatttcaaatttccc 1973



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>gb|AC092643.2| Homo sapiens BAC clone RP11-393P9 from 4, complete sequence
          Length = 151902

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 38    aaatttccccccaagttacc 57
             ||||||||||||||||||||
Sbjct: 77542 aaatttccccccaagttacc 77561



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>gb|AC160646.2| Gallus gallus BAC clone CH261-24P2 from chromosome unknown, complete
             sequence
          Length = 212960

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    cacattgcatttcaaatttc 44
             ||||||||||||||||||||
Sbjct: 26652 cacattgcatttcaaatttc 26633



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>gb|AC009202.7| Drosophila melanogaster, chromosome 2L, region 36D-36D, BAC clone
              BACR06C11, complete sequence
          Length = 174500

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 27     cattgcatttcaaatttccc 46
              ||||||||||||||||||||
Sbjct: 148936 cattgcatttcaaatttccc 148917



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>gb|AC011662.1|AC011662 Drosophila melanogaster, chromosome 2L, region 36D-, BAC clones
             BACR01G10 and BACR05I08, complete sequence
          Length = 294942

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 27    cattgcatttcaaatttccc 46
             ||||||||||||||||||||
Sbjct: 16921 cattgcatttcaaatttccc 16902



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>gb|AE003656.2| Drosophila melanogaster chromosome 2L, section 65 of 83 of the complete
              sequence
          Length = 251192

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 27     cattgcatttcaaatttccc 46
              ||||||||||||||||||||
Sbjct: 179433 cattgcatttcaaatttccc 179414


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,562,437
Number of Sequences: 3902068
Number of extensions: 2562437
Number of successful extensions: 53020
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52990
Number of HSP's gapped (non-prelim): 29
length of query: 307
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 285
effective length of database: 17,147,199,772
effective search space: 4886951935020
effective search space used: 4886951935020
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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