ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet14c09 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_189610.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1581 Score = 285 bits (144), Expect = 5e-74 Identities = 168/176 (95%) Strand = Plus / Minus Query: 168 tcatggcaggtcctccttcatgccgcgggcgaactcctgcgagtgctccttggtgacgca 227 |||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||| Sbjct: 1330 tcatggcaggtcctccttcatgccgcggacgaactcctccgagtgttccttggtgacgca 1271 Query: 228 gctggcgagcatcctggtgccgtccagcggcagcggcgccttgaggatgacgacggaggc 287 |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 1270 gctggcgagcatccgcgtgccgtcgagcggcagcggcgccttgaggatgacgacggaggc 1211 Query: 288 gatgaagtcgttgttgacgagcggtccggcgaacatgggcgggccgaagccgtagt 343 |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| Sbjct: 1210 gatgaagtcgttgttgacgagcgggccggcgaacttgggcgggccgaagccgtagt 1155
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 285 bits (144), Expect = 5e-74 Identities = 168/176 (95%) Strand = Plus / Minus Query: 168 tcatggcaggtcctccttcatgccgcgggcgaactcctgcgagtgctccttggtgacgca 227 |||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||| Sbjct: 4531603 tcatggcaggtcctccttcatgccgcggacgaactcctccgagtgttccttggtgacgca 4531544 Query: 228 gctggcgagcatcctggtgccgtccagcggcagcggcgccttgaggatgacgacggaggc 287 |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 4531543 gctggcgagcatccgcgtgccgtcgagcggcagcggcgccttgaggatgacgacggaggc 4531484 Query: 288 gatgaagtcgttgttgacgagcggtccggcgaacatgggcgggccgaagccgtagt 343 |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| Sbjct: 4531483 gatgaagtcgttgttgacgagcgggccggcgaacttgggcgggccgaagccgtagt 4531428
>dbj|AP002486.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0510F03 Length = 149699 Score = 285 bits (144), Expect = 5e-74 Identities = 168/176 (95%) Strand = Plus / Minus Query: 168 tcatggcaggtcctccttcatgccgcgggcgaactcctgcgagtgctccttggtgacgca 227 |||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||| Sbjct: 66290 tcatggcaggtcctccttcatgccgcggacgaactcctccgagtgttccttggtgacgca 66231 Query: 228 gctggcgagcatcctggtgccgtccagcggcagcggcgccttgaggatgacgacggaggc 287 |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 66230 gctggcgagcatccgcgtgccgtcgagcggcagcggcgccttgaggatgacgacggaggc 66171 Query: 288 gatgaagtcgttgttgacgagcggtccggcgaacatgggcgggccgaagccgtagt 343 |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| Sbjct: 66170 gatgaagtcgttgttgacgagcgggccggcgaacttgggcgggccgaagccgtagt 66115
>dbj|AK110554.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-168-C05, full insert sequence Length = 1033 Score = 285 bits (144), Expect = 5e-74 Identities = 168/176 (95%) Strand = Plus / Plus Query: 168 tcatggcaggtcctccttcatgccgcgggcgaactcctgcgagtgctccttggtgacgca 227 |||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||| Sbjct: 52 tcatggcaggtcctccttcatgccgcggacgaactcctccgagtgttccttggtgacgca 111 Query: 228 gctggcgagcatcctggtgccgtccagcggcagcggcgccttgaggatgacgacggaggc 287 |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 112 gctggcgagcatccgcgtgccgtcgagcggcagcggcgccttgaggatgacgacggaggc 171 Query: 288 gatgaagtcgttgttgacgagcggtccggcgaacatgggcgggccgaagccgtagt 343 |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| Sbjct: 172 gatgaagtcgttgttgacgagcgggccggcgaacttgggcgggccgaagccgtagt 227
>dbj|AK104360.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-C03, full insert sequence Length = 1097 Score = 285 bits (144), Expect = 5e-74 Identities = 168/176 (95%) Strand = Plus / Minus Query: 168 tcatggcaggtcctccttcatgccgcgggcgaactcctgcgagtgctccttggtgacgca 227 |||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||| Sbjct: 841 tcatggcaggtcctccttcatgccgcggacgaactcctccgagtgttccttggtgacgca 782 Query: 228 gctggcgagcatcctggtgccgtccagcggcagcggcgccttgaggatgacgacggaggc 287 |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 781 gctggcgagcatccgcgtgccgtcgagcggcagcggcgccttgaggatgacgacggaggc 722 Query: 288 gatgaagtcgttgttgacgagcggtccggcgaacatgggcgggccgaagccgtagt 343 |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| Sbjct: 721 gatgaagtcgttgttgacgagcgggccggcgaacttgggcgggccgaagccgtagt 666
>dbj|AK098922.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002O23, full insert sequence Length = 1581 Score = 285 bits (144), Expect = 5e-74 Identities = 168/176 (95%) Strand = Plus / Minus Query: 168 tcatggcaggtcctccttcatgccgcgggcgaactcctgcgagtgctccttggtgacgca 227 |||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||| Sbjct: 1330 tcatggcaggtcctccttcatgccgcggacgaactcctccgagtgttccttggtgacgca 1271 Query: 228 gctggcgagcatcctggtgccgtccagcggcagcggcgccttgaggatgacgacggaggc 287 |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 1270 gctggcgagcatccgcgtgccgtcgagcggcagcggcgccttgaggatgacgacggaggc 1211 Query: 288 gatgaagtcgttgttgacgagcggtccggcgaacatgggcgggccgaagccgtagt 343 |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| Sbjct: 1210 gatgaagtcgttgttgacgagcgggccggcgaacttgggcgggccgaagccgtagt 1155
>dbj|AK065320.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002P13, full insert sequence Length = 2131 Score = 285 bits (144), Expect = 5e-74 Identities = 168/176 (95%) Strand = Plus / Minus Query: 168 tcatggcaggtcctccttcatgccgcgggcgaactcctgcgagtgctccttggtgacgca 227 |||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||| Sbjct: 1872 tcatggcaggtcctccttcatgccgcggacgaactcctccgagtgttccttggtgacgca 1813 Query: 228 gctggcgagcatcctggtgccgtccagcggcagcggcgccttgaggatgacgacggaggc 287 |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 1812 gctggcgagcatccgcgtgccgtcgagcggcagcggcgccttgaggatgacgacggaggc 1753 Query: 288 gatgaagtcgttgttgacgagcggtccggcgaacatgggcgggccgaagccgtagt 343 |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| Sbjct: 1752 gatgaagtcgttgttgacgagcgggccggcgaacttgggcgggccgaagccgtagt 1697
>dbj|AK065131.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001P14, full insert sequence Length = 1593 Score = 285 bits (144), Expect = 5e-74 Identities = 168/176 (95%) Strand = Plus / Minus Query: 168 tcatggcaggtcctccttcatgccgcgggcgaactcctgcgagtgctccttggtgacgca 227 |||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||| Sbjct: 1334 tcatggcaggtcctccttcatgccgcggacgaactcctccgagtgttccttggtgacgca 1275 Query: 228 gctggcgagcatcctggtgccgtccagcggcagcggcgccttgaggatgacgacggaggc 287 |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 1274 gctggcgagcatccgcgtgccgtcgagcggcagcggcgccttgaggatgacgacggaggc 1215 Query: 288 gatgaagtcgttgttgacgagcggtccggcgaacatgggcgggccgaagccgtagt 343 |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| Sbjct: 1214 gatgaagtcgttgttgacgagcgggccggcgaacttgggcgggccgaagccgtagt 1159
>dbj|AK061343.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-E05, full insert sequence Length = 1097 Score = 285 bits (144), Expect = 5e-74 Identities = 168/176 (95%) Strand = Plus / Minus Query: 168 tcatggcaggtcctccttcatgccgcgggcgaactcctgcgagtgctccttggtgacgca 227 |||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||| Sbjct: 841 tcatggcaggtcctccttcatgccgcggacgaactcctccgagtgttccttggtgacgca 782 Query: 228 gctggcgagcatcctggtgccgtccagcggcagcggcgccttgaggatgacgacggaggc 287 |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 781 gctggcgagcatccgcgtgccgtcgagcggcagcggcgccttgaggatgacgacggaggc 722 Query: 288 gatgaagtcgttgttgacgagcggtccggcgaacatgggcgggccgaagccgtagt 343 |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| Sbjct: 721 gatgaagtcgttgttgacgagcgggccggcgaacttgggcgggccgaagccgtagt 666
>gb|AC157319.2| Zea mays clone ZMMBBb-136E2, complete sequence Length = 138186 Score = 262 bits (132), Expect = 7e-67 Identities = 162/172 (94%) Strand = Plus / Plus Query: 172 ggcaggtcctccttcatgccgcgggcgaactcctgcgagtgctccttggtgacgcagctg 231 |||||||| ||||||||||| ||||||||||||| ||||| |||||||||||||||||| Sbjct: 109542 ggcaggtcttccttcatgccacgggcgaactcctcggagtgttccttggtgacgcagctg 109601 Query: 232 gcgagcatcctggtgccgtccagcggcagcggcgccttgaggatgacgacggaggcgatg 291 |||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||| Sbjct: 109602 gcgagcatcctggtgccgtcgagcgggagcggcgccttgaggaagacgacggaggcgatg 109661 Query: 292 aagtcgttgttgacgagcggtccggcgaacatgggcgggccgaagccgtagt 343 |||||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct: 109662 aagtcgttgttgacgagcgggccggcgaagatgggcgggccgaagccgtagt 109713
>gb|AY110165.1| Zea mays CL20454_1 mRNA sequence Length = 1000 Score = 262 bits (132), Expect = 7e-67 Identities = 162/172 (94%) Strand = Plus / Minus Query: 172 ggcaggtcctccttcatgccgcgggcgaactcctgcgagtgctccttggtgacgcagctg 231 |||||||| ||||||||||| ||||||||||||| ||||| |||||||||||||||||| Sbjct: 735 ggcaggtcttccttcatgccacgggcgaactcctcggagtgttccttggtgacgcagctg 676 Query: 232 gcgagcatcctggtgccgtccagcggcagcggcgccttgaggatgacgacggaggcgatg 291 |||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||| Sbjct: 675 gcgagcatcctggtgccgtcgagcgggagcggcgccttgaggaagacgacggaggcgatg 616 Query: 292 aagtcgttgttgacgagcggtccggcgaacatgggcgggccgaagccgtagt 343 |||||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct: 615 aagtcgttgttgacgagcgggccggcgaagatgggcgggccgaagccgtagt 564
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 44.1 bits (22), Expect = 0.29 Identities = 28/30 (93%) Strand = Plus / Plus Query: 218 tggtgacgcagctggcgagcatcctggtgc 247 ||||| |||||||||||| ||||||||||| Sbjct: 1944020 tggtgccgcagctggcgaccatcctggtgc 1944049
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Plus Query: 132 agattttctccggtccagcaaa 153 |||||||||||||||||||||| Sbjct: 20923175 agattttctccggtccagcaaa 20923196 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 243 ggtgccgtccagcggcagcg 262 |||||||||||||||||||| Sbjct: 8267290 ggtgccgtccagcggcagcg 8267309
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.29 Identities = 49/58 (84%) Strand = Plus / Plus Query: 210 gtgctccttggtgacgcagctggcgagcatcctggtgccgtccagcggcagcggcgcc 267 ||||||||||||||||||||| || |||| || |||||| | |||||| ||||||| Sbjct: 22995873 gtgctccttggtgacgcagctcgccagcagccgcgtgccggcgagcggcgccggcgcc 22995930
>dbj|AP003868.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1111_B08 Length = 131184 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Plus Query: 132 agattttctccggtccagcaaa 153 |||||||||||||||||||||| Sbjct: 101476 agattttctccggtccagcaaa 101497
>dbj|AP004571.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0652A05 Length = 150455 Score = 44.1 bits (22), Expect = 0.29 Identities = 49/58 (84%) Strand = Plus / Plus Query: 210 gtgctccttggtgacgcagctggcgagcatcctggtgccgtccagcggcagcggcgcc 267 ||||||||||||||||||||| || |||| || |||||| | |||||| ||||||| Sbjct: 62417 gtgctccttggtgacgcagctcgccagcagccgcgtgccggcgagcggcgccggcgcc 62474
>gb|AC164954.3| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940128D9, complete sequence Length = 128585 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 164 tcgctcatggcaggtcctcct 184 ||||||||||||||||||||| Sbjct: 110083 tcgctcatggcaggtcctcct 110103
>ref|XM_780646.1| PREDICTED: Strongylocentrotus purpuratus similar to phosphatidylinositol-4-phosphate 5-kinase, type II, beta (LOC580595), mRNA Length = 1140 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 136 tttctccggtccagcaaagggaagt 160 ||||||||||||||| ||||||||| Sbjct: 295 tttctccggtccagcgaagggaagt 319
>ref|NM_179608.1| Arabidopsis thaliana unknown protein AT2G05810 transcript variant AT2G05810.2 mRNA, complete cds Length = 2015 Score = 40.1 bits (20), Expect = 4.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 278 cgacggaggcgatgaagtcgttgttgac 305 ||||||||||| ||||||||||||||| Sbjct: 1607 cgacggaggcggcgaagtcgttgttgac 1634
>ref|NM_126594.3| Arabidopsis thaliana unknown protein AT2G05810 transcript variant AT2G05810.1 mRNA, complete cds Length = 2282 Score = 40.1 bits (20), Expect = 4.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 278 cgacggaggcgatgaagtcgttgttgac 305 ||||||||||| ||||||||||||||| Sbjct: 1607 cgacggaggcggcgaagtcgttgttgac 1634
>ref|NM_117584.1| Arabidopsis thaliana unknown protein AT4G14970 mRNA, complete cds Length = 3861 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 tgaggatgacgacggaggcg 288 |||||||||||||||||||| Sbjct: 51 tgaggatgacgacggaggcg 32
>ref|XM_480860.1| Oryza sativa (japonica cultivar-group), mRNA Length = 456 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 243 ggtgccgtccagcggcagcg 262 |||||||||||||||||||| Sbjct: 296 ggtgccgtccagcggcagcg 315
>gb|BT015173.1| Arabidopsis thaliana At2g05810 gene, complete cds Length = 1743 Score = 40.1 bits (20), Expect = 4.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 278 cgacggaggcgatgaagtcgttgttgac 305 ||||||||||| ||||||||||||||| Sbjct: 1415 cgacggaggcggcgaagtcgttgttgac 1442
>emb|AL157897.8| Human DNA sequence from clone RP11-8D22 on chromosome 10, complete sequence Length = 173310 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 4 tcaagatgtagaaacaaagtaagt 27 ||||||||||||||||| |||||| Sbjct: 142117 tcaagatgtagaaacaacgtaagt 142140
>emb|Z97337.2|ATFCA2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 2 Length = 202860 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 tgaggatgacgacggaggcg 288 |||||||||||||||||||| Sbjct: 118972 tgaggatgacgacggaggcg 118953
>gb|AY099770.1| Arabidopsis thaliana unknown protein (At2g05810) mRNA, complete cds Length = 2109 Score = 40.1 bits (20), Expect = 4.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 278 cgacggaggcgatgaagtcgttgttgac 305 ||||||||||| ||||||||||||||| Sbjct: 1462 cgacggaggcggcgaagtcgttgttgac 1489
>gb|AC006555.4| Arabidopsis thaliana chromosome 2 clone T17C22 map ve013, complete sequence Length = 29078 Score = 40.1 bits (20), Expect = 4.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 278 cgacggaggcgatgaagtcgttgttgac 305 ||||||||||| ||||||||||||||| Sbjct: 19488 cgacggaggcggcgaagtcgttgttgac 19461
>gb|AF439839.1|AF439839 Arabidopsis thaliana At2g05810/T17C22.4 mRNA sequence Length = 1870 Score = 40.1 bits (20), Expect = 4.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 278 cgacggaggcgatgaagtcgttgttgac 305 ||||||||||| ||||||||||||||| Sbjct: 1586 cgacggaggcggcgaagtcgttgttgac 1613
>emb|BX826737.1|CNS0A392 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB59ZF06 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1823 Score = 40.1 bits (20), Expect = 4.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 278 cgacggaggcgatgaagtcgttgttgac 305 ||||||||||| ||||||||||||||| Sbjct: 284 cgacggaggcggcgaagtcgttgttgac 257
>gb|AC140186.3| Mus musculus BAC clone RP24-363G9 from chromosome 16, complete sequence Length = 139767 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 agctggcgagcatcctggtg 246 |||||||||||||||||||| Sbjct: 30459 agctggcgagcatcctggtg 30478
>dbj|AP004705.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0682A06 Length = 142023 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 243 ggtgccgtccagcggcagcg 262 |||||||||||||||||||| Sbjct: 7399 ggtgccgtccagcggcagcg 7418
>dbj|AP004648.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1449_H02 Length = 117860 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 243 ggtgccgtccagcggcagcg 262 |||||||||||||||||||| Sbjct: 99972 ggtgccgtccagcggcagcg 99991
>emb|AL161540.2|ATCHRIV40 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 40 Length = 197405 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 tgaggatgacgacggaggcg 288 |||||||||||||||||||| Sbjct: 64426 tgaggatgacgacggaggcg 64407
>gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome Length = 2519802 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 84 cagcaacgatatcaaccaaacaac 107 |||||||| ||||||||||||||| Sbjct: 2431910 cagcaacgttatcaaccaaacaac 2431933
>gb|AC168019.4| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940127D9, complete sequence Length = 102832 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 atcagcagctccacgacgcg 130 |||||||||||||||||||| Sbjct: 14131 atcagcagctccacgacgcg 14150
>dbj|D16207.1|RERAG Rhodococcus rhodochrous amidase gene Length = 1958 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 cgtccagcggcagcggcgcc 267 |||||||||||||||||||| Sbjct: 728 cgtccagcggcagcggcgcc 747 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,373,863 Number of Sequences: 3902068 Number of extensions: 2373863 Number of successful extensions: 49819 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49588 Number of HSP's gapped (non-prelim): 231 length of query: 343 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 321 effective length of database: 17,147,199,772 effective search space: 5504251126812 effective search space used: 5504251126812 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
