>gb|DQ139268.1| Triticum aestivum geranylgeranyl hydrogenase mRNA, complete cds
          Length = 1704

 Score =  250 bits (126), Expect = 3e-63
 Identities = 161/172 (93%), Gaps = 3/172 (1%)
 Strand = Plus / Minus

                                                                        
Query: 255  tacaagaaaatgggacaggttcgaccaagacacgacctctcgatcgacgccattacctct 314
            ||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||  
Sbjct: 1666 tacaagaaaaccggacaggatcgaccaagacacgacctctcgatcgacgccattacct-- 1609

                                                                        
Query: 315  ttattctcatctcctctgcctcaaatccgttcgatcggccgcggatctctgctataccga 374
             ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1608 -tattctcatctcctctgcctcaaatccgttcgatcagccgcggatctctgctataccga 1550

                                                                
Query: 375  tcgatccgccgcagcttcgagcaacccaagcaggatgtcagggacgtttccg 426
             ||||||||||||||||||||| ||||||||||| ||||||| |||||||||
Sbjct: 1549 ccgatccgccgcagcttcgagcgacccaagcaggctgtcaggaacgtttccg 1498



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 235  ctgaagtctgaacatcaccgt 255
            |||||||||||||||||||||
Sbjct: 1704 ctgaagtctgaacatcaccgt 1684

>emb|AL359834.18| Human DNA sequence from clone RP11-121P12 on chromosome 1 Contains
            the 3' end of a novel gene, complete sequence
          Length = 70248

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 309  acctctttattctcatctcctct 331
            |||||||||||||||||||||||
Sbjct: 4992 acctctttattctcatctcctct 4970

>gb|AC154635.2| Mus musculus BAC clone RP23-299N21 from 13, complete sequence
          Length = 157982

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 312   tctttattctcatctcctctgc 333
             ||||||||||||||||||||||
Sbjct: 61750 tctttattctcatctcctctgc 61771

>gb|AC165242.6| Mus musculus chromosome 3, clone RP24-98F15, complete sequence
          Length = 185876

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 138    gagaacaaacatgaacaaaaa 158
              |||||||||||||||||||||
Sbjct: 105988 gagaacaaacatgaacaaaaa 105968

>gb|AC115014.6| Mus musculus chromosome 3, clone RP24-196G4, complete sequence
          Length = 169069

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 138    gagaacaaacatgaacaaaaa 158
              |||||||||||||||||||||
Sbjct: 163496 gagaacaaacatgaacaaaaa 163516

>ref|XM_521035.1| PREDICTED: Pan troglodytes similar to PCTAIRE protein kinase 1;
            serine/threonine-protein kinase (LOC465602), mRNA
          Length = 2547

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 398  acccaagcaggatgtcaggg 417
            ||||||||||||||||||||
Sbjct: 2062 acccaagcaggatgtcaggg 2043

>gb|AC099707.14| Mus musculus chromosome 1, clone RP23-329C7, complete sequence
          Length = 204557

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 315    ttattctcatctcctctgcc 334
              ||||||||||||||||||||
Sbjct: 106842 ttattctcatctcctctgcc 106823

>ref|NM_006201.3| Homo sapiens PCTAIRE protein kinase 1 (PCTK1), transcript variant 1,
            mRNA
          Length = 3130

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 398  acccaagcaggatgtcaggg 417
            ||||||||||||||||||||
Sbjct: 1402 acccaagcaggatgtcaggg 1383

>ref|NM_033018.2| Homo sapiens PCTAIRE protein kinase 1 (PCTK1), transcript variant 2,
            mRNA
          Length = 3172

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 398  acccaagcaggatgtcaggg 417
            ||||||||||||||||||||
Sbjct: 1444 acccaagcaggatgtcaggg 1425

>gb|BC006190.2| Homo sapiens PCTAIRE protein kinase 1, mRNA (cDNA clone MGC:10347
            IMAGE:3830397), complete cds
          Length = 2987

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 398  acccaagcaggatgtcaggg 417
            ||||||||||||||||||||
Sbjct: 1258 acccaagcaggatgtcaggg 1239

>gb|AC134460.4| Mus musculus BAC clone RP23-373D18 from chromosome 10, complete sequence
          Length = 174545

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 179    ctacattcattcacatatcg 198
              ||||||||||||||||||||
Sbjct: 116647 ctacattcattcacatatcg 116628

>gb|BC001048.2| Homo sapiens PCTAIRE protein kinase 1, transcript variant 2, mRNA
            (cDNA clone MGC:1330 IMAGE:3504276), complete cds
          Length = 2176

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 398  acccaagcaggatgtcaggg 417
            ||||||||||||||||||||
Sbjct: 1444 acccaagcaggatgtcaggg 1425

>gb|BC015607.2| Homo sapiens PCTAIRE protein kinase 1, transcript variant 2, mRNA
            (cDNA clone MGC:23461 IMAGE:4762081), complete cds
          Length = 3142

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 398  acccaagcaggatgtcaggg 417
            ||||||||||||||||||||
Sbjct: 1411 acccaagcaggatgtcaggg 1392

>ref|XM_386685.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG06509.1)
           partial mRNA
          Length = 1617

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 135 cgcgagaacaaacatgaaca 154
           ||||||||||||||||||||
Sbjct: 438 cgcgagaacaaacatgaaca 419

>gb|BC009852.2| Homo sapiens PCTAIRE protein kinase 1, mRNA (cDNA clone
           IMAGE:3632161), partial cds
          Length = 1484

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 398 acccaagcaggatgtcaggg 417
           ||||||||||||||||||||
Sbjct: 704 acccaagcaggatgtcaggg 685

>gb|AF040647.1| Caenorhabditis elegans cosmid F54D12, complete sequence
          Length = 38094

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    atgtagtatcaaaatacatt 33
             ||||||||||||||||||||
Sbjct: 15706 atgtagtatcaaaatacatt 15725

>emb|AL137140.12| Human DNA sequence from clone RP11-137M6 on chromosome 13q21.33-22.3
              Contains the SCEL gene for sciellin, a novel gene and a CpG
              island, complete sequence
          Length = 193098

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 140    gaacaaacatgaacaaaaaa 159
              ||||||||||||||||||||
Sbjct: 130744 gaacaaacatgaacaaaaaa 130725

>emb|AL096791.13|HSJ659F15 Human DNA sequence from clone RP4-659F15 on chromosome Xp11.21-11.4
            Contains the PCTK1 gene for PCTAIRE protein kinase 1, the
            USP11 gene for ubiquitin specific protease 11 (UXH1) and
            a CpG Island, complete sequence
          Length = 41087

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 398  acccaagcaggatgtcaggg 417
            ||||||||||||||||||||
Sbjct: 6361 acccaagcaggatgtcaggg 6342

>emb|X66363.1|HSSTHPKD H.sapiens mRNA PCTAIRE-1 for serine/threonine protein kinase
          Length = 1745

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 398  acccaagcaggatgtcaggg 417
            ||||||||||||||||||||
Sbjct: 1129 acccaagcaggatgtcaggg 1110

>gb|BT007518.1| Synthetic construct Homo sapiens PCTAIRE protein kinase 1 mRNA,
            partial cds
          Length = 1491

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 398  acccaagcaggatgtcaggg 417
            ||||||||||||||||||||
Sbjct: 1006 acccaagcaggatgtcaggg 987

>emb|CR383668.12| Zebrafish DNA sequence from clone DKEY-199M13 in linkage group 3,
             complete sequence
          Length = 228685

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 174   ttatactacattcattcaca 193
             ||||||||||||||||||||
Sbjct: 31586 ttatactacattcattcaca 31605

>gb|BT006827.1| Homo sapiens PCTAIRE protein kinase 1 mRNA, complete cds
          Length = 1491

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 398  acccaagcaggatgtcaggg 417
            ||||||||||||||||||||
Sbjct: 1006 acccaagcaggatgtcaggg 987

>gb|AC175467.3| Pan troglodytes BAC clone CH251-302C22 from chromosome unknown,
             complete sequence
          Length = 186532

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 142   acaaacatgaacaaaaaacttgaa 165
             ||||| ||||||||||||||||||
Sbjct: 44735 acaaatatgaacaaaaaacttgaa 44712

>gb|AC183302.2| Pan troglodytes BAC clone CH251-258O5 from chromosome unknown, complete
             sequence
          Length = 211208

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 142   acaaacatgaacaaaaaacttgaa 165
             ||||| ||||||||||||||||||
Sbjct: 55775 acaaatatgaacaaaaaacttgaa 55798

>dbj|AK131486.1| Homo sapiens cDNA FLJ16665 fis, clone THYMU2031249, highly  similar
            to SERINE/THREONINE-PROTEIN KINASE PCTAIRE-1 (EC 2.7.1.-)
          Length = 3016

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 398  acccaagcaggatgtcaggg 417
            ||||||||||||||||||||
Sbjct: 2142 acccaagcaggatgtcaggg 2123

>emb|CR620813.1| full-length cDNA clone CS0DC008YH12 of Neuroblastoma Cot
            25-normalized of Homo sapiens (human)
          Length = 1574

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 398  acccaagcaggatgtcaggg 417
            ||||||||||||||||||||
Sbjct: 1400 acccaagcaggatgtcaggg 1381

>emb|BX119930.5| Zebrafish DNA sequence from clone DKEY-18G4 in linkage group 3, complete
              sequence
          Length = 186318

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 139    agaacaaacatgaacaaaaa 158
              ||||||||||||||||||||
Sbjct: 142890 agaacaaacatgaacaaaaa 142871

>gb|AY335624.1| Synthetic construct Homo sapiens PCTAIRE protein kinase 1 (PCTK1)
            mRNA, partial cds
          Length = 1491

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 398  acccaagcaggatgtcaggg 417
            ||||||||||||||||||||
Sbjct: 1006 acccaagcaggatgtcaggg 987

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 5        aacaaccatatgtagtatcaaaat 28
                ||||||||||||||| ||||||||
Sbjct: 33942140 aacaaccatatgtagcatcaaaat 33942163

>gb|AY891941.1| Synthetic construct Homo sapiens clone FLH013086.01L PCTAIRE protein
            kinase 1 (PCTK1) mRNA, partial cds
          Length = 1491

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 398  acccaagcaggatgtcaggg 417
            ||||||||||||||||||||
Sbjct: 1006 acccaagcaggatgtcaggg 987

>gb|AY891940.1| Synthetic construct Homo sapiens clone FLH013085.01L PCTAIRE protein
            kinase 1 (PCTK1) mRNA, partial cds
          Length = 1491

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 398  acccaagcaggatgtcaggg 417
            ||||||||||||||||||||
Sbjct: 1006 acccaagcaggatgtcaggg 987

>gb|AY889470.1| Synthetic construct Homo sapiens clone FLH013089.01X PCTAIRE protein
            kinase 1 (PCTK1) mRNA, complete cds
          Length = 1491

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 398  acccaagcaggatgtcaggg 417
            ||||||||||||||||||||
Sbjct: 1006 acccaagcaggatgtcaggg 987

>dbj|AP003975.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1004_E04
          Length = 133621

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 5      aacaaccatatgtagtatcaaaat 28
              ||||||||||||||| ||||||||
Sbjct: 101103 aacaaccatatgtagcatcaaaat 101126

>emb|BX004869.13| Zebrafish DNA sequence from clone CH211-69E21 in linkage group 17,
             complete sequence
          Length = 182325

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 139   agaacaaacatgaacaaaaa 158
             ||||||||||||||||||||
Sbjct: 88313 agaacaaacatgaacaaaaa 88294

>emb|CR394552.9| Zebrafish DNA sequence from clone DKEYP-109B10 in linkage group 25,
             complete sequence
          Length = 196037

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 174   ttatactacattcattcaca 193
             ||||||||||||||||||||
Sbjct: 88779 ttatactacattcattcaca 88798

>emb|CR628371.8| Zebrafish DNA sequence from clone CH211-250J16 in linkage group 10,
              complete sequence
          Length = 153880

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 174    ttatactacattcattcaca 193
              ||||||||||||||||||||
Sbjct: 107000 ttatactacattcattcaca 106981

>gb|AC153533.4| Mus musculus 10 BAC RP23-474K10 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 187069

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 179    ctacattcattcacatatcg 198
              ||||||||||||||||||||
Sbjct: 126215 ctacattcattcacatatcg 126234

>dbj|AB209465.1| Homo sapiens premature mRNA for Hypothetical protein FLJ16665 variant
          Length = 3388

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 398  acccaagcaggatgtcaggg 417
            ||||||||||||||||||||
Sbjct: 1678 acccaagcaggatgtcaggg 1659


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,546,758
Number of Sequences: 3902068
Number of extensions: 3546758
Number of successful extensions: 73957
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73871
Number of HSP's gapped (non-prelim): 85
length of query: 426
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 404
effective length of database: 17,147,199,772
effective search space: 6927468707888
effective search space used: 6927468707888
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)