ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet14a10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC137592.2| Oryza sativa (Japonica cultiva-group) chromosome ... 186 3e-44
2dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 186 3e-44
3dbj|AP005090.3| Oryza sativa (japonica cultivar-group) genomic D... 186 3e-44
4dbj|AK062292.1| Oryza sativa (japonica cultivar-group) cDNA clon... 186 3e-44
5dbj|AP005396.3| Oryza sativa (japonica cultivar-group) genomic D... 145 1e-31
6ref|XM_464802.1| Oryza sativa (japonica cultivar-group), mRNA 80 5e-12
7dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 80 5e-12
8dbj|AP004117.3| Oryza sativa (japonica cultivar-group) genomic D... 80 5e-12
9dbj|AP005614.2| Oryza sativa (japonica cultivar-group) genomic D... 80 5e-12
10dbj|AP005004.3| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
11gb|AC098833.2| Oryza sativa (japonica cultivar-group) chromosome... 48 0.018
12gb|AC118285.2| Oryza sativa (japonica cultivar-group) chromosome... 48 0.018
13dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.018
14gb|AF111709.1|AF111709 Oryza sativa subsp. indica Retrosat 1 ret... 48 0.018
15gb|AC019306.10| Homo sapiens chromosome 18, clone RP11-326M20, c... 46 0.070
16gb|AC007768.5| Homo sapiens chromosome 18, clone RP11-540M4, com... 46 0.070
17gb|AC102776.10| Mus musculus chromosome 1, clone RP23-469D21, co... 46 0.070
18emb|Z68306.1|RCRPODGEN R.capsulatus rpoD gene 44 0.28
19gb|U28162.1|RCU28162 Rhodobacter capsulatus primary sigma factor... 44 0.28
20emb|AL590394.7| Human DNA sequence from clone RP11-435I7 on chro... 42 1.1
21emb|BX255893.5| Zebrafish DNA sequence from clone CH211-272H10 i... 42 1.1
22gb|AE017143.1| Haemophilus ducreyi strain 35000HP complete genome 42 1.1
23gb|AC108429.11| Mus musculus chromosome 7, clone RP23-161B5, com... 40 4.3
24gb|AC102795.28| Mus musculus chromosome 3, clone RP23-182B7, com... 40 4.3
25gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 4.3
26gb|AC126115.5| Rattus norvegicus 4 BAC CH230-213L22 (Children's ... 40 4.3
27gb|AC159624.2| Mus musculus BAC clone RP24-270G2 from chromosome... 40 4.3
28gb|AC137511.3| Mus musculus BAC clone RP24-313I8 from chromosome... 40 4.3
29emb|Z69884.1|CEF31F6 Caenorhabditis elegans Cosmid F31F6, comple... 40 4.3
30ref|XM_721506.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 4.3
31gb|AC120138.9| Mus musculus chromosome 1, clone RP23-283D3, comp... 40 4.3
32emb|AL162712.16| Human DNA sequence from clone RP11-158A8 on chr... 40 4.3
33gb|CP000087.1| Rickettsia bellii RML369-C, complete genome 40 4.3
34dbj|AK061908.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.3
35gb|AC122142.1| Caenorhabditis briggsae cosmid CB019M24, complete... 40 4.3
36dbj|D14817.1|MUSMKA Mus musculus domesticus MK gene, promoter re... 40 4.3
37gb|AC098827.3| Homo sapiens BAC clone RP11-640B6 from 4, complet... 40 4.3
38gb|AC134763.4| Rattus norvegicus BAC CH230-221M14 (Children's H... 40 4.3
39gb|CP000264.1| Jannaschia sp. CCS1, complete genome 40 4.3
40gb|AC122353.5| Mus musculus BAC clone RP23-391E17 from chromosom... 40 4.3
41gb|AC160403.5| Mus musculus 10 BAC RP24-286J14 (Roswell Park Can... 40 4.3
42gb|AC010667.10|AC010667 Drosophila melanogaster, chromosome 4, r... 40 4.3
43dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
44gb|DP000027.1| Rattus norvegicus target 1 genomic scaffold 40 4.3
45gb|AC139715.1| Homo sapiens BAC clone RP11-399D2 from 4, complet... 40 4.3
46dbj|AP003543.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
47dbj|AK120250.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.3
48gb|AC153987.4| Mus musculus 6 BAC RP24-430K15 (Roswell Park Canc... 40 4.3
49emb|BX649386.4| Zebrafish DNA sequence from clone RP71-18A24 in ... 40 4.3
50gb|AC111037.8| Mus musculus chromosome 5, clone RP24-299M10, com... 40 4.3
51gb|U67425.1|RSU67425 Rhodobacter sphaeroides sigma 70-type sigma... 40 4.3
52gb|AE003844.5| Drosophila melanogaster chromosome 4, section 2 o... 40 4.3
53gb|AC146916.3| Rattus norvegicus strain Brown Norway clone CH230... 40 4.3
54emb|CR555296.6| Zebrafish DNA sequence from clone DKEY-88J18 in ... 40 4.3
55dbj|AP002760.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 4.3
56dbj|AB017651.2| Homo sapiens genomic DNA, chromosome 11q23.2, cl... 40 4.3
57emb|AL157400.8| Human DNA sequence from clone RP11-80H5 on chrom... 40 4.3
58emb|BX000366.6| Zebrafish DNA sequence from clone CH211-204I4, c... 40 4.3
59gb|AC153422.5| Mus musculus 10 BAC RP23-427I15 (Roswell Park Can... 40 4.3
60emb|AL731772.9| Mouse DNA sequence from clone RP23-273F8 on chro... 40 4.3
61dbj|AB086353.1| Brassica oleracea BO-ACS2 mRNA for 1-aminocyclop... 40 4.3 
>gb|AC137592.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone
              OSJNBa0035B22, complete sequence
          Length = 155788

 Score =  186 bits (94), Expect = 3e-44
 Identities = 145/162 (89%)
 Strand = Plus / Plus

                                                                          
Query: 141    cggcatctgcagcttgtcggctaagctcttggcccccttgagcgagagcacgagccagac 200
              ||||||||| ||||||||||| ||| ||||||| |||||||||||||| | |||||||||
Sbjct: 134679 cggcatctggagcttgtcggccaaggtcttggcgcccttgagcgagagaatgagccagac 134738

                                                                          
Query: 201    gaaggagaggaactccccaccttcacccaagctcttggcgtgcaggtaacccctgcacat 260
              ||||||||||||||| |||||||| || | ||||||||| || ||||| ||||| |||||
Sbjct: 134739 gaaggagaggaactcgccaccttctccgaggctcttggcatgtaggtatcccctacacat 134798

                                                        
Query: 261    gctggcggagtagcagagcatgcccagccacacccggtacat 302
              ||||||||||||| |||||||||||| |||||| ||||||||
Sbjct: 134799 gctggcggagtagaagagcatgcccacccacacacggtacat 134840
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  186 bits (94), Expect = 3e-44
 Identities = 145/162 (89%)
 Strand = Plus / Plus

                                                                            
Query: 141      cggcatctgcagcttgtcggctaagctcttggcccccttgagcgagagcacgagccagac 200
                ||||||||| ||||||||||| ||| ||||||| |||||||||||||| | |||||||||
Sbjct: 21929245 cggcatctggagcttgtcggccaaggtcttggcgcccttgagcgagagaatgagccagac 21929304

                                                                            
Query: 201      gaaggagaggaactccccaccttcacccaagctcttggcgtgcaggtaacccctgcacat 260
                ||||||||||||||| |||||||| || | ||||||||| || ||||| ||||| |||||
Sbjct: 21929305 gaaggagaggaactcgccaccttctccgaggctcttggcatgtaggtatcccctacacat 21929364

                                                          
Query: 261      gctggcggagtagcagagcatgcccagccacacccggtacat 302
                ||||||||||||| |||||||||||| |||||| ||||||||
Sbjct: 21929365 gctggcggagtagaagagcatgcccacccacacacggtacat 21929406



 Score =  145 bits (73), Expect = 1e-31
 Identities = 142/165 (86%)
 Strand = Plus / Plus

                                                                            
Query: 142      ggcatctgcagcttgtcggctaagctcttggcccccttgagcgagagcacgagccagacg 201
                |||||||| ||||||||||  ||| |||||| ||||||||  ||||| |  |||||||||
Sbjct: 22053652 ggcatctggagcttgtcggacaaggtcttggtccccttgatggagaggagaagccagacg 22053711

                                                                            
Query: 202      aaggagaggaactccccaccttcacccaagctcttggcgtgcaggtaacccctgcacatg 261
                |||||||||||||| || ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 22053712 aaggagaggaactcgccgccttcacccaagctcttggcgtggaggtagcccctgcacatg 22053771

                                                             
Query: 262      ctggcggagtagcagagcatgcccagccacacccggtacatgagc 306
                  |||||||||| ||||||| || | ||| ||  |||||||||||
Sbjct: 22053772 gcggcggagtagaagagcatcccaacccagacatggtacatgagc 22053816
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>dbj|AP005090.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1065_E04
          Length = 115865

 Score =  186 bits (94), Expect = 3e-44
 Identities = 145/162 (89%)
 Strand = Plus / Plus

                                                                         
Query: 141   cggcatctgcagcttgtcggctaagctcttggcccccttgagcgagagcacgagccagac 200
             ||||||||| ||||||||||| ||| ||||||| |||||||||||||| | |||||||||
Sbjct: 59960 cggcatctggagcttgtcggccaaggtcttggcgcccttgagcgagagaatgagccagac 60019

                                                                         
Query: 201   gaaggagaggaactccccaccttcacccaagctcttggcgtgcaggtaacccctgcacat 260
             ||||||||||||||| |||||||| || | ||||||||| || ||||| ||||| |||||
Sbjct: 60020 gaaggagaggaactcgccaccttctccgaggctcttggcatgtaggtatcccctacacat 60079

                                                       
Query: 261   gctggcggagtagcagagcatgcccagccacacccggtacat 302
             ||||||||||||| |||||||||||| |||||| ||||||||
Sbjct: 60080 gctggcggagtagaagagcatgcccacccacacacggtacat 60121
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>dbj|AK062292.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-E12, full
            insert sequence
          Length = 1553

 Score =  186 bits (94), Expect = 3e-44
 Identities = 145/162 (89%)
 Strand = Plus / Minus

                                                                        
Query: 141  cggcatctgcagcttgtcggctaagctcttggcccccttgagcgagagcacgagccagac 200
            ||||||||| ||||||||||| ||| ||||||| |||||||||||||| | |||||||||
Sbjct: 1208 cggcatctggagcttgtcggccaaggtcttggcgcccttgagcgagagaatgagccagac 1149

                                                                        
Query: 201  gaaggagaggaactccccaccttcacccaagctcttggcgtgcaggtaacccctgcacat 260
            ||||||||||||||| |||||||| || | ||||||||| || ||||| ||||| |||||
Sbjct: 1148 gaaggagaggaactcgccaccttctccgaggctcttggcatgtaggtatcccctacacat 1089

                                                      
Query: 261  gctggcggagtagcagagcatgcccagccacacccggtacat 302
            ||||||||||||| |||||||||||| |||||| ||||||||
Sbjct: 1088 gctggcggagtagaagagcatgcccacccacacacggtacat 1047
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>dbj|AP005396.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0635G10
          Length = 146728

 Score =  145 bits (73), Expect = 1e-31
 Identities = 142/165 (86%)
 Strand = Plus / Plus

                                                                         
Query: 142   ggcatctgcagcttgtcggctaagctcttggcccccttgagcgagagcacgagccagacg 201
             |||||||| ||||||||||  ||| |||||| ||||||||  ||||| |  |||||||||
Sbjct: 95716 ggcatctggagcttgtcggacaaggtcttggtccccttgatggagaggagaagccagacg 95775

                                                                         
Query: 202   aaggagaggaactccccaccttcacccaagctcttggcgtgcaggtaacccctgcacatg 261
             |||||||||||||| || ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 95776 aaggagaggaactcgccgccttcacccaagctcttggcgtggaggtagcccctgcacatg 95835

                                                          
Query: 262   ctggcggagtagcagagcatgcccagccacacccggtacatgagc 306
               |||||||||| ||||||| || | ||| ||  |||||||||||
Sbjct: 95836 gcggcggagtagaagagcatcccaacccagacatggtacatgagc 95880
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>ref|XM_464802.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1920

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 73/84 (86%)
 Strand = Plus / Minus

                                                                        
Query: 192  gagccagacgaaggagaggaactccccaccttcacccaagctcttggcgtgcaggtaacc 251
            |||||||||||  | |||||||||||| ||  ||||||||||||||||||||||| | ||
Sbjct: 1836 gagccagacgacagtgaggaactccccgccggcacccaagctcttggcgtgcaggaatcc 1777

                                    
Query: 252  cctgcacatgctggcggagtagca 275
            ||||||  |||| |||||||||||
Sbjct: 1776 cctgcatctgctcgcggagtagca 1753
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 73/84 (86%)
 Strand = Plus / Plus

                                                                           
Query: 192     gagccagacgaaggagaggaactccccaccttcacccaagctcttggcgtgcaggtaacc 251
               |||||||||||  | |||||||||||| ||  ||||||||||||||||||||||| | ||
Sbjct: 8267416 gagccagacgacagtgaggaactccccgccggcacccaagctcttggcgtgcaggaatcc 8267475

                                       
Query: 252     cctgcacatgctggcggagtagca 275
               ||||||  |||| |||||||||||
Sbjct: 8267476 cctgcatctgctcgcggagtagca 8267499



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 74/89 (83%)
 Strand = Plus / Minus

                                                                           
Query: 187     agcacgagccagacgaaggagaggaactccccaccttcacccaagctcttggcgtgcagg 246
               |||| ||||||||||| || |||||||||||| ||  | |||| |||||||  |||||||
Sbjct: 8107752 agcaggagccagacgacggtgaggaactccccgccgacgcccatgctcttgctgtgcagg 8107693

                                            
Query: 247     taacccctgcacatgctggcggagtagca 275
                | ||||||||  |||| |||||||||||
Sbjct: 8107692 aaccccctgcatctgctcgcggagtagca 8107664
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>dbj|AP004117.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1134_F06
          Length = 130968

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 73/84 (86%)
 Strand = Plus / Plus

                                                                         
Query: 192   gagccagacgaaggagaggaactccccaccttcacccaagctcttggcgtgcaggtaacc 251
             |||||||||||  | |||||||||||| ||  ||||||||||||||||||||||| | ||
Sbjct: 99562 gagccagacgacagtgaggaactccccgccggcacccaagctcttggcgtgcaggaatcc 99621

                                     
Query: 252   cctgcacatgctggcggagtagca 275
             ||||||  |||| |||||||||||
Sbjct: 99622 cctgcatctgctcgcggagtagca 99645
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>dbj|AP005614.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0090H18
          Length = 174842

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 73/84 (86%)
 Strand = Plus / Plus

                                                                         
Query: 192   gagccagacgaaggagaggaactccccaccttcacccaagctcttggcgtgcaggtaacc 251
             |||||||||||  | |||||||||||| ||  ||||||||||||||||||||||| | ||
Sbjct: 44087 gagccagacgacagtgaggaactccccgccggcacccaagctcttggcgtgcaggaatcc 44146

                                     
Query: 252   cctgcacatgctggcggagtagca 275
             ||||||  |||| |||||||||||
Sbjct: 44147 cctgcatctgctcgcggagtagca 44170
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>dbj|AP005004.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0503B05
          Length = 156814

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 74/89 (83%)
 Strand = Plus / Minus

                                                                         
Query: 187   agcacgagccagacgaaggagaggaactccccaccttcacccaagctcttggcgtgcagg 246
             |||| ||||||||||| || |||||||||||| ||  | |||| |||||||  |||||||
Sbjct: 95945 agcaggagccagacgacggtgaggaactccccgccgacgcccatgctcttgctgtgcagg 95886

                                          
Query: 247   taacccctgcacatgctggcggagtagca 275
              | ||||||||  |||| |||||||||||
Sbjct: 95885 aaccccctgcatctgctcgcggagtagca 95857
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>gb|AC098833.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1288_A07,
              complete sequence
          Length = 122120

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 69/84 (82%)
 Strand = Plus / Plus

                                                                          
Query: 192    gagccagacgaaggagaggaactccccaccttcacccaagctcttggcgtgcaggtaacc 251
              |||||| ||| |||||||| ||||||| || |  || |||||||||||||||| ||| ||
Sbjct: 100301 gagccacacgtaggagaggtactcccctccctggcctaagctcttggcgtgcaagtaccc 100360

                                      
Query: 252    cctgcacatgctggcggagtagca 275
               |||||  |||| |||||| ||||
Sbjct: 100361 tctgcatctgctcgcggagaagca 100384
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>gb|AC118285.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1206_C08,
             complete sequence
          Length = 115026

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 69/84 (82%)
 Strand = Plus / Plus

                                                                         
Query: 192   gagccagacgaaggagaggaactccccaccttcacccaagctcttggcgtgcaggtaacc 251
             |||||| ||| |||||||| ||||||| || |  || |||||||||||||||| ||| ||
Sbjct: 56602 gagccacacgtaggagaggtactcccctccctggcctaagctcttggcgtgcaagtaccc 56661

                                     
Query: 252   cctgcacatgctggcggagtagca 275
              |||||  |||| |||||| ||||
Sbjct: 56662 tctgcatctgctcgcggagaagca 56685
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 69/84 (82%)
 Strand = Plus / Plus

                                                                            
Query: 192      gagccagacgaaggagaggaactccccaccttcacccaagctcttggcgtgcaggtaacc 251
                |||||| ||| |||||||| ||||||| || |  || |||||||||||||||| ||| ||
Sbjct: 26818362 gagccacacgtaggagaggtactcccctccctggcctaagctcttggcgtgcaagtaccc 26818421

                                        
Query: 252      cctgcacatgctggcggagtagca 275
                 |||||  |||| |||||| ||||
Sbjct: 26818422 tctgcatctgctcgcggagaagca 26818445
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>gb|AF111709.1|AF111709 Oryza sativa subsp. indica Retrosat 1 retrotransposon and Ty3-Gypsy
             type Retrosat 2 retrotransposon, complete sequences; and
             unknown genes
          Length = 52684

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 69/84 (82%)
 Strand = Plus / Plus

                                                                         
Query: 192   gagccagacgaaggagaggaactccccaccttcacccaagctcttggcgtgcaggtaacc 251
             |||||| ||| |||||||| ||||||| || |  || |||||||||||||||| ||| ||
Sbjct: 13196 gagccacacgtaggagaggtactcccctccctggcctaagctcttggcgtgcaagtaccc 13255

                                     
Query: 252   cctgcacatgctggcggagtagca 275
              |||||  |||| |||||| ||||
Sbjct: 13256 tctgcatctgctcgcggagaagca 13279
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>gb|AC019306.10| Homo sapiens chromosome 18, clone RP11-326M20, complete sequence
          Length = 175840

 Score = 46.1 bits (23), Expect = 0.070
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 213   ctccccaccttcacccaagctcttggc 239
             |||||||||||||||| ||||||||||
Sbjct: 33997 ctccccaccttcaccccagctcttggc 34023
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>gb|AC007768.5| Homo sapiens chromosome 18, clone RP11-540M4, complete sequence
          Length = 175579

 Score = 46.1 bits (23), Expect = 0.070
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 213    ctccccaccttcacccaagctcttggc 239
              |||||||||||||||| ||||||||||
Sbjct: 121130 ctccccaccttcaccccagctcttggc 121156
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>gb|AC102776.10| Mus musculus chromosome 1, clone RP23-469D21, complete sequence
          Length = 190746

 Score = 46.1 bits (23), Expect = 0.070
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 46   aagaaaacaagaaaggaaaccaa 68
            |||||||||||||||||||||||
Sbjct: 7701 aagaaaacaagaaaggaaaccaa 7679
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>emb|Z68306.1|RCRPODGEN R.capsulatus rpoD gene
          Length = 2350

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 136  tccagcggcatctgcagcttgtcggc 161
            |||||||||||||||||||| |||||
Sbjct: 1818 tccagcggcatctgcagcttttcggc 1793
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>gb|U28162.1|RCU28162 Rhodobacter capsulatus primary sigma factor RpoD (rpoD) and unknown
            ORF 1 genes, complete cds, and unknown ORF 2 gene,
            partial cds
          Length = 3413

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 136  tccagcggcatctgcagcttgtcggc 161
            |||||||||||||||||||| |||||
Sbjct: 2398 tccagcggcatctgcagcttttcggc 2373
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>emb|AL590394.7| Human DNA sequence from clone RP11-435I7 on chromosome X Contains part
             of the gene for a novel protein (FLJ31204), complete
             sequence
          Length = 62195

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 20    cacaaacaattcaagcaaata 40
             |||||||||||||||||||||
Sbjct: 56146 cacaaacaattcaagcaaata 56126
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>emb|BX255893.5| Zebrafish DNA sequence from clone CH211-272H10 in linkage group 4,
             complete sequence
          Length = 99176

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 34    gcaaataaggtaaagaaaaca 54
             |||||||||||||||||||||
Sbjct: 16032 gcaaataaggtaaagaaaaca 16052
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>gb|AE017143.1| Haemophilus ducreyi strain 35000HP complete genome
          Length = 1698955

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 23     aaacaattcaagcaaataaggtaaa 47
              ||||||| |||||||||||||||||
Sbjct: 281369 aaacaatgcaagcaaataaggtaaa 281345
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>gb|AC108429.11| Mus musculus chromosome 7, clone RP23-161B5, complete sequence
          Length = 186903

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 45     aaagaaaacaagaaaggaaa 64
              ||||||||||||||||||||
Sbjct: 101309 aaagaaaacaagaaaggaaa 101290
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>gb|AC102795.28| Mus musculus chromosome 3, clone RP23-182B7, complete sequence
          Length = 226270

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 27    aattcaagcaaataaggtaaagaa 50
             |||| |||||||||||||||||||
Sbjct: 73558 aattaaagcaaataaggtaaagaa 73581
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 134     tctccagcggcatctgcagcttgtcggc 161
               |||| ||||||||||||||||| |||||
Sbjct: 2125401 tctcgagcggcatctgcagcttttcggc 2125428
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>gb|AC126115.5| Rattus norvegicus 4 BAC CH230-213L22 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 214442

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 45     aaagaaaacaagaaaggaaaccaa 68
              ||||||||||| ||||||||||||
Sbjct: 147660 aaagaaaacaaaaaaggaaaccaa 147637
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>gb|AC159624.2| Mus musculus BAC clone RP24-270G2 from chromosome 12, complete sequence
          Length = 187364

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 45     aaagaaaacaagaaaggaaa 64
              ||||||||||||||||||||
Sbjct: 123764 aaagaaaacaagaaaggaaa 123745
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>gb|AC137511.3| Mus musculus BAC clone RP24-313I8 from chromosome 5, complete sequence
          Length = 168197

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    aaagaaaacaagaaaggaaa 64
             ||||||||||||||||||||
Sbjct: 33593 aaagaaaacaagaaaggaaa 33574
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>emb|Z69884.1|CEF31F6 Caenorhabditis elegans Cosmid F31F6, complete sequence
          Length = 36049

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 45    aaagaaaacaagaaaggaaaccaa 68
             |||||||||| |||||||||||||
Sbjct: 22329 aaagaaaacatgaaaggaaaccaa 22306
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>ref|XM_721506.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY00072)
            partial mRNA
          Length = 10993

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 45   aaagaaaacaagaaaggaaa 64
            ||||||||||||||||||||
Sbjct: 9647 aaagaaaacaagaaaggaaa 9666
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>gb|AC120138.9| Mus musculus chromosome 1, clone RP23-283D3, complete sequence
          Length = 216381

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 45     aaagaaaacaagaaaggaaa 64
              ||||||||||||||||||||
Sbjct: 123745 aaagaaaacaagaaaggaaa 123726
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>emb|AL162712.16| Human DNA sequence from clone RP11-158A8 on chromosome 13 Contains a
             novel gene, complete sequence
          Length = 115331

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 36    aaataaggtaaagaaaacaagaaa 59
             |||||||||||| |||||||||||
Sbjct: 54735 aaataaggtaaataaaacaagaaa 54758
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>gb|CP000087.1| Rickettsia bellii RML369-C, complete genome
          Length = 1522076

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 23      aaacaattcaagcaaataag 42
               ||||||||||||||||||||
Sbjct: 1235345 aaacaattcaagcaaataag 1235326
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>dbj|AK061908.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-H12, full
           insert sequence
          Length = 650

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 48  gaaaacaagaaaggaaaccaatca 71
           |||||||||||||||||| |||||
Sbjct: 498 gaaaacaagaaaggaaacaaatca 521
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>gb|AC122142.1| Caenorhabditis briggsae cosmid CB019M24, complete sequence
          Length = 111147

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 44     taaagaaaacaagaaaggaa 63
              ||||||||||||||||||||
Sbjct: 100514 taaagaaaacaagaaaggaa 100533
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>dbj|D14817.1|MUSMKA Mus musculus domesticus MK gene, promoter region
          Length = 1956

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 45  aaagaaaacaagaaaggaaa 64
           ||||||||||||||||||||
Sbjct: 811 aaagaaaacaagaaaggaaa 792
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>gb|AC098827.3| Homo sapiens BAC clone RP11-640B6 from 4, complete sequence
          Length = 200914

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 32    aagcaaataaggtaaagaaa 51
             ||||||||||||||||||||
Sbjct: 16664 aagcaaataaggtaaagaaa 16645
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>gb|AC134763.4| Rattus norvegicus  BAC CH230-221M14 (Children's Hospital Oakland Research
              Institute Rat (BN/SsNHsd/MCW) BAC library) complete
              sequence
          Length = 222524

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 45     aaagaaaacaagaaaggaaa 64
              ||||||||||||||||||||
Sbjct: 158641 aaagaaaacaagaaaggaaa 158622
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>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 134     tctccagcggcatctgcagcttgtcggc 161
               ||||||||||||| |||||||| |||||
Sbjct: 3499525 tctccagcggcatttgcagcttctcggc 3499498
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>gb|AC122353.5| Mus musculus BAC clone RP23-391E17 from chromosome 16, complete
             sequence
          Length = 200401

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    aaagaaaacaagaaaggaaa 64
             ||||||||||||||||||||
Sbjct: 11815 aaagaaaacaagaaaggaaa 11796
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>gb|AC160403.5| Mus musculus 10 BAC RP24-286J14 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 180869

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 45    aaagaaaacaagaaaggaaa 64
             ||||||||||||||||||||
Sbjct: 12737 aaagaaaacaagaaaggaaa 12756
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>gb|AC010667.10|AC010667 Drosophila melanogaster, chromosome 4, region 101F-102F, BAC clone
              BACR40P19, complete sequence
          Length = 159570

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 29     ttcaagcaaataaggtaaagaaaacaagaaag 60
              ||||| ||||||||||||| |||| |||||||
Sbjct: 145735 ttcaaacaaataaggtaaacaaaataagaaag 145766
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 48       gaaaacaagaaaggaaaccaatca 71
                |||||||||||||||||| |||||
Sbjct: 12200723 gaaaacaagaaaggaaacaaatca 12200746
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>gb|DP000027.1| Rattus norvegicus target 1 genomic scaffold
          Length = 1888123

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 45     aaagaaaacaagaaaggaaaccaa 68
              ||||||||||| ||||||||||||
Sbjct: 155335 aaagaaaacaaaaaaggaaaccaa 155312
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>gb|AC139715.1| Homo sapiens BAC clone RP11-399D2 from 4, complete sequence
          Length = 174076

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 32     aagcaaataaggtaaagaaa 51
              ||||||||||||||||||||
Sbjct: 101255 aagcaaataaggtaaagaaa 101236
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>dbj|AP003543.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0592B08
          Length = 131096

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 48    gaaaacaagaaaggaaaccaatca 71
             |||||||||||||||||| |||||
Sbjct: 37745 gaaaacaagaaaggaaacaaatca 37768
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>dbj|AK120250.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045F22, full
            insert sequence
          Length = 1968

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 48   gaaaacaagaaaggaaaccaatca 71
            |||||||||||||||||| |||||
Sbjct: 1791 gaaaacaagaaaggaaacaaatca 1814
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>gb|AC153987.4| Mus musculus 6 BAC RP24-430K15 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 133371

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 45    aaagaaaacaagaaaggaaa 64
             ||||||||||||||||||||
Sbjct: 71233 aaagaaaacaagaaaggaaa 71252
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>emb|BX649386.4| Zebrafish DNA sequence from clone RP71-18A24 in linkage group 4, complete
              sequence
          Length = 161671

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 45     aaagaaaacaagaaaggaaa 64
              ||||||||||||||||||||
Sbjct: 111713 aaagaaaacaagaaaggaaa 111732
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>gb|AC111037.8| Mus musculus chromosome 5, clone RP24-299M10, complete sequence
          Length = 155488

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 161   ctaagctcttggcccccttg 180
             ||||||||||||||||||||
Sbjct: 54434 ctaagctcttggcccccttg 54415
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>gb|U67425.1|RSU67425 Rhodobacter sphaeroides sigma 70-type sigma factor SigA (sigA) gene,
            complete cds
          Length = 2034

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 134  tctccagcggcatctgcagcttgtcggc 161
            |||| ||||||||||||||||| |||||
Sbjct: 1651 tctcgagcggcatctgcagcttttcggc 1624
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>gb|AE003844.5| Drosophila melanogaster chromosome 4, section 2 of 5 of the complete
              sequence
          Length = 315846

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 29     ttcaagcaaataaggtaaagaaaacaagaaag 60
              ||||| ||||||||||||| |||| |||||||
Sbjct: 138820 ttcaaacaaataaggtaaacaaaataagaaag 138789
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>gb|AC146916.3| Rattus norvegicus strain Brown Norway clone CH230-206L9, complete
              sequence
          Length = 215015

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 45     aaagaaaacaagaaaggaaaccaa 68
              ||||||||||| ||||||||||||
Sbjct: 155335 aaagaaaacaaaaaaggaaaccaa 155312
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>emb|CR555296.6| Zebrafish DNA sequence from clone DKEY-88J18 in linkage group 10,
              complete sequence
          Length = 198271

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 49     aaaacaagaaaggaaaccaa 68
              ||||||||||||||||||||
Sbjct: 176762 aaaacaagaaaggaaaccaa 176781
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>dbj|AP002760.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-795E18, complete
            sequence
          Length = 211673

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 214  tccccaccttcacccaagct 233
            ||||||||||||||||||||
Sbjct: 9730 tccccaccttcacccaagct 9711
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>dbj|AB017651.2| Homo sapiens genomic DNA, chromosome 11q23.2, clone:KB615C6, complete
              sequence
          Length = 131668

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 214    tccccaccttcacccaagct 233
              ||||||||||||||||||||
Sbjct: 112694 tccccaccttcacccaagct 112675
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>emb|AL157400.8| Human DNA sequence from clone RP11-80H5 on chromosome 10 Contains the
             PANK1 gene for pantothenate kinase 1, a pantothenate
             kinase 1 (PANK1) pseudogene, four novel genes, the 5' end
             of the MPHOSPH1 gene for M-phase phosphoprotein 1, a Homo
             sapiens miR-107-precursor-10 micro RNA and two CpG
             islands, complete sequence
          Length = 148396

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 45    aaagaaaacaagaaaggaaa 64
             ||||||||||||||||||||
Sbjct: 42822 aaagaaaacaagaaaggaaa 42841
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>emb|BX000366.6| Zebrafish DNA sequence from clone CH211-204I4, complete sequence
          Length = 169542

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    cgtcacacaaacaattcaag 34
             ||||||||||||||||||||
Sbjct: 52133 cgtcacacaaacaattcaag 52152
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>gb|AC153422.5| Mus musculus 10 BAC RP23-427I15 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 197906

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    aaagaaaacaagaaaggaaa 64
             ||||||||||||||||||||
Sbjct: 25399 aaagaaaacaagaaaggaaa 25380
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>emb|AL731772.9| Mouse DNA sequence from clone RP23-273F8 on chromosome 2, complete
             sequence
          Length = 99258

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 45    aaagaaaacaagaaaggaaa 64
             ||||||||||||||||||||
Sbjct: 70422 aaagaaaacaagaaaggaaa 70441
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>dbj|AB086353.1| Brassica oleracea BO-ACS2 mRNA for
          1-aminocyclopropane-1-carboxylate synthase, complete
          cds
          Length = 1693

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 45 aaagaaaacaagaaaggaaa 64
          ||||||||||||||||||||
Sbjct: 35 aaagaaaacaagaaaggaaa 54


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,990,075
Number of Sequences: 3902068
Number of extensions: 2990075
Number of successful extensions: 57397
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 57200
Number of HSP's gapped (non-prelim): 198
length of query: 326
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 304
effective length of database: 17,147,199,772
effective search space: 5212748730688
effective search space used: 5212748730688
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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