ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet13e06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY107288.1| Zea mays PCO086668 mRNA sequence 139 8e-30
2ref|NM_197543.1| Oryza sativa (japonica cultivar-group) hypothet... 125 1e-25
3dbj|AK103995.1| Oryza sativa (japonica cultivar-group) cDNA clon... 125 1e-25
4dbj|AK066849.1| Oryza sativa (japonica cultivar-group) cDNA clon... 125 1e-25
5gb|AC092697.6| Oryza sativa chromosome 10 BAC OSJNBb0060I05 geno... 52 0.002
6gb|AC074196.14| Oryza sativa chromosome 10 BAC OSJNBa0040D23 gen... 52 0.002
7dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
8gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 52 0.002
9emb|BX324200.5| Mouse DNA sequence from clone RP23-382H2 on chro... 46 0.093
10gb|AC009299.5| Homo sapiens BAC clone RP11-26B22 from 2, complet... 42 1.5
11dbj|AP006638.1| Lotus japonicus genomic DNA, chromosome 3, clone... 42 1.5
12gb|AY809754.1| Schistosoma japonicum SJCHGC05565 protein mRNA, p... 40 5.7
13gb|AC112929.12| Mus musculus chromosome 14, clone RP23-432A7, co... 40 5.7
14gb|AY525610.1| Homo sapiens progesterone receptor (PGR) gene, co... 40 5.7
15gb|AC125464.4| Mus musculus BAC clone RP23-113C9 from 14, comple... 40 5.7
16ref|XM_961171.1| Plasmodium falciparum 3D7 hypothetical protein ... 40 5.7
17emb|AL596114.10| Human DNA sequence from clone RP11-274A8 on chr... 40 5.7
18emb|CR382401.1| Plasmodium falciparum chromosome 6, complete seq... 40 5.7
19gb|AC068515.6| Homo sapiens, clone RP11-61O11, complete sequence 40 5.7
20gb|AC016113.9| Homo sapiens, clone RP11-26P22, complete sequence 40 5.7
21gb|AY971672.1| Wuchereria bancrofti PMR1 mRNA, partial sequence 40 5.7
22dbj|AP001533.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 5.7
23gb|L42008.1|BACXTAB Bacillus sp. xylose transport ATP-binding pr... 40 5.7 
>gb|AY107288.1| Zea mays PCO086668 mRNA sequence
          Length = 471

 Score =  139 bits (70), Expect = 8e-30
 Identities = 145/170 (85%)
 Strand = Plus / Minus

                                                                       
Query: 258 cgctgattatatcctcgtaaatgttcctgaccttagcgaagaatgctttcctgtcgggct 317
           ||||||| ||||||||||| || | ||||||||| || ||||| || | |||||| ||||
Sbjct: 294 cgctgataatatcctcgtagatctccctgaccttcgcaaagaaagcatccctgtcaggct 235

                                                                       
Query: 318 tgaatatcaggttcttgtacgcaaaccacccgctgtagccgatgccaacgaccttcatga 377
           |||||| ||||||   |||||| |||||||||||||| || || |||||| ||| ||| |
Sbjct: 234 tgaatagcaggtttcggtacgcgaaccacccgctgtatccaattccaacggcctgcatca 175

                                                             
Query: 378 gacctggaaccacggggagcctgtcgattgccgatactactccgccggcg 427
           |||| ||||||||||||||||| ||||||||||| |||||||| ||||||
Sbjct: 174 gaccaggaaccacggggagcctatcgattgccgacactactccaccggcg 125
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>ref|NM_197543.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBb0060I05.14), mRNA
          Length = 519

 Score =  125 bits (63), Expect = 1e-25
 Identities = 144/171 (84%)
 Strand = Plus / Minus

                                                                       
Query: 257 ccgctgattatatcctcgtaaatgttcctgaccttagcgaagaatgctttcctgtcgggc 316
           |||||||||||||||||||| |  | ||| ||||| || ||||| |||| |||||| |||
Sbjct: 515 ccgctgattatatcctcgtagacctccctaacctttgcaaagaaagcttccctgtcaggc 456

                                                                       
Query: 317 ttgaatatcaggttcttgtacgcaaaccacccgctgtagccgatgccaacgaccttcatg 376
           ||||| | |||||||  ||| |||||||||||||||||||| ||||||||  | | ||||
Sbjct: 455 ttgaacagcaggttccggtatgcaaaccacccgctgtagccaatgccaacagcttccatg 396

                                                              
Query: 377 agacctggaaccacggggagcctgtcgattgccgatactactccgccggcg 427
           ||||| ||||| |  || |||||||| ||||||||||| ||||||||||||
Sbjct: 395 agaccaggaacgataggaagcctgtcaattgccgatacaactccgccggcg 345
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>dbj|AK103995.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-F12, full
           insert sequence
          Length = 758

 Score =  125 bits (63), Expect = 1e-25
 Identities = 144/171 (84%)
 Strand = Plus / Minus

                                                                       
Query: 257 ccgctgattatatcctcgtaaatgttcctgaccttagcgaagaatgctttcctgtcgggc 316
           |||||||||||||||||||| |  | ||| ||||| || ||||| |||| |||||| |||
Sbjct: 589 ccgctgattatatcctcgtagacctccctaacctttgcaaagaaagcttccctgtcaggc 530

                                                                       
Query: 317 ttgaatatcaggttcttgtacgcaaaccacccgctgtagccgatgccaacgaccttcatg 376
           ||||| | |||||||  ||| |||||||||||||||||||| ||||||||  | | ||||
Sbjct: 529 ttgaacagcaggttccggtatgcaaaccacccgctgtagccaatgccaacagcttccatg 470

                                                              
Query: 377 agacctggaaccacggggagcctgtcgattgccgatactactccgccggcg 427
           ||||| ||||| |  || |||||||| ||||||||||| ||||||||||||
Sbjct: 469 agaccaggaacgataggaagcctgtcaattgccgatacaactccgccggcg 419



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 49/56 (87%), Gaps = 3/56 (5%)
 Strand = Plus / Minus

                                                                   
Query: 99  tgtccaacttatttagatatgcattgagtaag---aattatattagatgctatgct 151
           |||||||||||| |||| || |||||||||||   ||||| |||||||||||||||
Sbjct: 721 tgtccaacttatatagacatacattgagtaagagcaattaaattagatgctatgct 666
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>dbj|AK066849.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075C23, full
           insert sequence
          Length = 779

 Score =  125 bits (63), Expect = 1e-25
 Identities = 144/171 (84%)
 Strand = Plus / Minus

                                                                       
Query: 257 ccgctgattatatcctcgtaaatgttcctgaccttagcgaagaatgctttcctgtcgggc 316
           |||||||||||||||||||| |  | ||| ||||| || ||||| |||| |||||| |||
Sbjct: 593 ccgctgattatatcctcgtagacctccctaacctttgcaaagaaagcttccctgtcaggc 534

                                                                       
Query: 317 ttgaatatcaggttcttgtacgcaaaccacccgctgtagccgatgccaacgaccttcatg 376
           ||||| | |||||||  ||| |||||||||||||||||||| ||||||||  | | ||||
Sbjct: 533 ttgaacagcaggttccggtatgcaaaccacccgctgtagccaatgccaacagcttccatg 474

                                                              
Query: 377 agacctggaaccacggggagcctgtcgattgccgatactactccgccggcg 427
           ||||| ||||| |  || |||||||| ||||||||||| ||||||||||||
Sbjct: 473 agaccaggaacgataggaagcctgtcaattgccgatacaactccgccggcg 423



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 49/56 (87%), Gaps = 3/56 (5%)
 Strand = Plus / Minus

                                                                   
Query: 99  tgtccaacttatttagatatgcattgagtaag---aattatattagatgctatgct 151
           |||||||||||| |||| || |||||||||||   ||||| |||||||||||||||
Sbjct: 725 tgtccaacttatatagacatacattgagtaagagcaattaaattagatgctatgct 670
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>gb|AC092697.6| Oryza sativa chromosome 10 BAC OSJNBb0060I05 genomic sequence, complete
             sequence
          Length = 105841

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 49/56 (87%), Gaps = 3/56 (5%)
 Strand = Plus / Minus

                                                                     
Query: 99    tgtccaacttatttagatatgcattgagtaag---aattatattagatgctatgct 151
             |||||||||||| |||| || |||||||||||   ||||| |||||||||||||||
Sbjct: 91492 tgtccaacttatatagacatacattgagtaagagcaattaaattagatgctatgct 91437



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 257   ccgctgattatatcctcgta 276
             ||||||||||||||||||||
Sbjct: 91360 ccgctgattatatcctcgta 91341



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 53/64 (82%)
 Strand = Plus / Minus

                                                                         
Query: 346   cccgctgtagccgatgccaacgaccttcatgagacctggaaccacggggagcctgtcgat 405
             |||||||||||| ||||||||  | | ||||||||| ||||| |  || |||||||| ||
Sbjct: 90801 cccgctgtagccaatgccaacagcttccatgagaccaggaacgataggaagcctgtcaat 90742

                 
Query: 406   tgcc 409
             ||||
Sbjct: 90741 tgcc 90738
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>gb|AC074196.14| Oryza sativa chromosome 10 BAC OSJNBa0040D23 genomic sequence, complete
             sequence
          Length = 134102

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 49/56 (87%), Gaps = 3/56 (5%)
 Strand = Plus / Minus

                                                                     
Query: 99    tgtccaacttatttagatatgcattgagtaag---aattatattagatgctatgct 151
             |||||||||||| |||| || |||||||||||   ||||| |||||||||||||||
Sbjct: 16138 tgtccaacttatatagacatacattgagtaagagcaattaaattagatgctatgct 16083



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 257   ccgctgattatatcctcgta 276
             ||||||||||||||||||||
Sbjct: 16006 ccgctgattatatcctcgta 15987



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 53/64 (82%)
 Strand = Plus / Minus

                                                                         
Query: 346   cccgctgtagccgatgccaacgaccttcatgagacctggaaccacggggagcctgtcgat 405
             |||||||||||| ||||||||  | | ||||||||| ||||| |  || |||||||| ||
Sbjct: 15447 cccgctgtagccaatgccaacagcttccatgagaccaggaacgataggaagcctgtcaat 15388

                 
Query: 406   tgcc 409
             ||||
Sbjct: 15387 tgcc 15384
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 49/56 (87%), Gaps = 3/56 (5%)
 Strand = Plus / Minus

                                                                        
Query: 99       tgtccaacttatttagatatgcattgagtaag---aattatattagatgctatgct 151
                |||||||||||| |||| || |||||||||||   ||||| |||||||||||||||
Sbjct: 20375990 tgtccaacttatatagacatacattgagtaagagcaattaaattagatgctatgct 20375935



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 257      ccgctgattatatcctcgta 276
                ||||||||||||||||||||
Sbjct: 20375858 ccgctgattatatcctcgta 20375839



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 53/64 (82%)
 Strand = Plus / Minus

                                                                            
Query: 346      cccgctgtagccgatgccaacgaccttcatgagacctggaaccacggggagcctgtcgat 405
                |||||||||||| ||||||||  | | ||||||||| ||||| |  || |||||||| ||
Sbjct: 20375299 cccgctgtagccaatgccaacagcttccatgagaccaggaacgataggaagcctgtcaat 20375240

                    
Query: 406      tgcc 409
                ||||
Sbjct: 20375239 tgcc 20375236
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 49/56 (87%), Gaps = 3/56 (5%)
 Strand = Plus / Minus

                                                                        
Query: 99       tgtccaacttatttagatatgcattgagtaag---aattatattagatgctatgct 151
                |||||||||||| |||| || |||||||||||   ||||| |||||||||||||||
Sbjct: 20387262 tgtccaacttatatagacatacattgagtaagagcaattaaattagatgctatgct 20387207



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 257      ccgctgattatatcctcgta 276
                ||||||||||||||||||||
Sbjct: 20387130 ccgctgattatatcctcgta 20387111



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 53/64 (82%)
 Strand = Plus / Minus

                                                                            
Query: 346      cccgctgtagccgatgccaacgaccttcatgagacctggaaccacggggagcctgtcgat 405
                |||||||||||| ||||||||  | | ||||||||| ||||| |  || |||||||| ||
Sbjct: 20386571 cccgctgtagccaatgccaacagcttccatgagaccaggaacgataggaagcctgtcaat 20386512

                    
Query: 406      tgcc 409
                ||||
Sbjct: 20386511 tgcc 20386508
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>emb|BX324200.5| Mouse DNA sequence from clone RP23-382H2 on chromosome 2, complete
              sequence
          Length = 180530

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 47     tgaacattctggcagatggtggctaaa 73
              |||| ||||||||||||||||||||||
Sbjct: 101240 tgaaaattctggcagatggtggctaaa 101266
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>gb|AC009299.5| Homo sapiens BAC clone RP11-26B22 from 2, complete sequence
          Length = 169697

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 17     accaattaatggaaaaggcagaatt 41
              |||| ||||||||||||||||||||
Sbjct: 117784 accatttaatggaaaaggcagaatt 117808
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>dbj|AP006638.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT47I16, TM0208c,
             complete sequence
          Length = 48081

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 314   ggcttgaatatcaggttcttgtacgcaaaccac 346
             |||||||| | |||||||||||| |||||||||
Sbjct: 12973 ggcttgaaaaccaggttcttgtatgcaaaccac 13005
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>gb|AY809754.1| Schistosoma japonicum SJCHGC05565 protein mRNA, partial cds
          Length = 1302

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 207 tgtgctttctctcaattggg 226
           ||||||||||||||||||||
Sbjct: 718 tgtgctttctctcaattggg 737
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>gb|AC112929.12| Mus musculus chromosome 14, clone RP23-432A7, complete sequence
          Length = 181674

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 75     acatcaaagtttttagcgtcaatt 98
              ||||||||||||||||| ||||||
Sbjct: 171054 acatcaaagtttttagcatcaatt 171077
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>gb|AY525610.1| Homo sapiens progesterone receptor (PGR) gene, complete cds
          Length = 96124

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 39    attgcctttgaacattctgg 58
             ||||||||||||||||||||
Sbjct: 51061 attgcctttgaacattctgg 51080
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>gb|AC125464.4| Mus musculus BAC clone RP23-113C9 from 14, complete sequence
          Length = 203804

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 75     acatcaaagtttttagcgtcaatt 98
              ||||||||||||||||| ||||||
Sbjct: 152335 acatcaaagtttttagcatcaatt 152312
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>ref|XM_961171.1| Plasmodium falciparum 3D7 hypothetical protein (PFF1365c) partial mRNA
          Length = 30864

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     tataaatttatgcaaccaat 22
             ||||||||||||||||||||
Sbjct: 21060 tataaatttatgcaaccaat 21079
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>emb|AL596114.10| Human DNA sequence from clone RP11-274A8 on chromosome 13 Containd the
             3' end of a novel gene (KIAA0774), a novel gene, the
             SLC7A1 gene for solute carrier family 7 (cationic amino
             acid transporter, y+ system), member 1, and a CpG island,
             complete sequence
          Length = 173191

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 203   actttgtgctttctctcaat 222
             ||||||||||||||||||||
Sbjct: 46767 actttgtgctttctctcaat 46786
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>emb|CR382401.1| Plasmodium falciparum chromosome 6, complete sequence; segment 4/5
          Length = 337203

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 3     tataaatttatgcaaccaat 22
             ||||||||||||||||||||
Sbjct: 87130 tataaatttatgcaaccaat 87111
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>gb|AC068515.6| Homo sapiens, clone RP11-61O11, complete sequence
          Length = 180917

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 22     ttaatggaaaaggcagaatt 41
              ||||||||||||||||||||
Sbjct: 108972 ttaatggaaaaggcagaatt 108991
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>gb|AC016113.9| Homo sapiens, clone RP11-26P22, complete sequence
          Length = 185419

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 92    gtcaatttgtccaacttatt 111
             ||||||||||||||||||||
Sbjct: 48639 gtcaatttgtccaacttatt 48620
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>gb|AY971672.1| Wuchereria bancrofti PMR1 mRNA, partial sequence
          Length = 568

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 195 ttttgagtactttgtgcttt 214
           ||||||||||||||||||||
Sbjct: 317 ttttgagtactttgtgcttt 336
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>dbj|AP001533.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-788M5, complete
             sequence
          Length = 207183

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 39    attgcctttgaacattctgg 58
             ||||||||||||||||||||
Sbjct: 63464 attgcctttgaacattctgg 63445
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>gb|L42008.1|BACXTAB Bacillus sp. xylose transport ATP-binding protein gene, 3' end of
           cds, xylose transport permease, xylose isomerase gene,
           complete cds, xylulose kinase gene, 5' end of cds
          Length = 4363

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 94  caatttgtccaacttattta 113
           ||||||||||||||||||||
Sbjct: 801 caatttgtccaacttattta 820


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,470,076
Number of Sequences: 3902068
Number of extensions: 3470076
Number of successful extensions: 65828
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65758
Number of HSP's gapped (non-prelim): 64
length of query: 427
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 405
effective length of database: 17,147,199,772
effective search space: 6944615907660
effective search space used: 6944615907660
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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