ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet13e05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 64 2e-07
2dbj|AP003613.3| Oryza sativa (japonica cultivar-group) genomic D... 64 2e-07
3dbj|AK102763.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 2e-07
4dbj|AK058304.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 2e-07
5dbj|AK071510.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.012
6gb|AC084549.1|CBRG31K21 Caenorhabditis briggsae cosmid G31K21, c... 42 0.76
7gb|AC105982.10| Mus musculus chromosome 15, clone RP24-159I1, co... 40 3.0
8gb|AY658678.1| Synthetic construct Peudomonas aeruginosa clone F... 40 3.0
9ref|XM_504072.1| Yarrowia lipolytica CLIB122, YALI0E17677g predi... 40 3.0
10emb|AL772136.5| Zebrafish DNA sequence from clone CH211-188C22 i... 40 3.0
11gb|AC011029.7| Homo sapiens chromosome 8, clone RP11-202L1, comp... 40 3.0
12gb|AC051632.18| Oryza sativa chromosome 10 BAC OSJNBa0012L23 gen... 40 3.0
13gb|AC153725.3| Medicago truncatula clone mth2-78c5, complete seq... 40 3.0
14emb|BX322794.6| Zebrafish DNA sequence from clone RP71-44B8 in l... 40 3.0
15gb|AC073510.7| Homo sapiens chromosome 8, clone RP11-240O2, comp... 40 3.0
16dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.0
17gb|AC009499.4| Homo sapiens BAC clone RP11-510D10 from 2, comple... 40 3.0
18gb|AE004645.1| Pseudomonas aeruginosa PAO1, section 206 of 529 o... 40 3.0
19gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 3.0
20gb|AC119935.17| Mus musculus chromosome 15, clone RP24-261L5, co... 40 3.0
21emb|BX649591.7| Zebrafish DNA sequence from clone CH211-181H6 in... 40 3.0
22emb|BX465868.6| Zebrafish DNA sequence from clone DKEY-42I9 in l... 40 3.0
23gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 3.0
24emb|CR848818.10| Zebrafish DNA sequence from clone DKEY-38O19 in... 40 3.0
25emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB ... 40 3.0

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 59/68 (86%)
 Strand = Plus / Minus

                                                                            
Query: 153      tcacaacttggtcttgaacggcacatagttcttgagcgactgggtgatgccctggatgga 212
                |||| ||||||||||||| || || |||| ||||||||||| | ||| ||||| ||||||
Sbjct: 20843878 tcacgacttggtcttgaaggggacgtagtgcttgagcgactcgctgacgccctcgatgga 20843819

                        
Query: 213      ggcgacgg 220
                ||||||||
Sbjct: 20843818 ggcgacgg 20843811



 Score = 48.1 bits (24), Expect = 0.012
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                        
Query: 161      tggtcttgaacggcacatagttcttgagcgactgggtgatgccctggatggaggcg 216
                |||||||||| ||||| ||| |||||||||| | |  || ||||||||||||||||
Sbjct: 20865810 tggtcttgaagggcacgtaggtcttgagcgagtcgaggacgccctggatggaggcg 20865755



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>dbj|AP003613.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0458E11
          Length = 148798

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 59/68 (86%)
 Strand = Plus / Minus

                                                                         
Query: 153   tcacaacttggtcttgaacggcacatagttcttgagcgactgggtgatgccctggatgga 212
             |||| ||||||||||||| || || |||| ||||||||||| | ||| ||||| ||||||
Sbjct: 98553 tcacgacttggtcttgaaggggacgtagtgcttgagcgactcgctgacgccctcgatgga 98494

                     
Query: 213   ggcgacgg 220
             ||||||||
Sbjct: 98493 ggcgacgg 98486



 Score = 48.1 bits (24), Expect = 0.012
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                      
Query: 161    tggtcttgaacggcacatagttcttgagcgactgggtgatgccctggatggaggcg 216
              |||||||||| ||||| ||| |||||||||| | |  || ||||||||||||||||
Sbjct: 120485 tggtcttgaagggcacgtaggtcttgagcgagtcgaggacgccctggatggaggcg 120430



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>dbj|AK102763.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107D14, full
            insert sequence
          Length = 1890

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 59/68 (86%)
 Strand = Plus / Minus

                                                                        
Query: 153  tcacaacttggtcttgaacggcacatagttcttgagcgactgggtgatgccctggatgga 212
            |||| ||||||||||||| || || |||| ||||||||||| | ||| ||||| ||||||
Sbjct: 1554 tcacgacttggtcttgaaggggacgtagtgcttgagcgactcgctgacgccctcgatgga 1495

                    
Query: 213  ggcgacgg 220
            ||||||||
Sbjct: 1494 ggcgacgg 1487



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>dbj|AK058304.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-H01, full
            insert sequence
          Length = 1823

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 59/68 (86%)
 Strand = Plus / Minus

                                                                        
Query: 153  tcacaacttggtcttgaacggcacatagttcttgagcgactgggtgatgccctggatgga 212
            |||| ||||||||||||| || || |||| ||||||||||| | ||| ||||| ||||||
Sbjct: 1551 tcacgacttggtcttgaaggggacgtagtgcttgagcgactcgctgacgccctcgatgga 1492

                    
Query: 213  ggcgacgg 220
            ||||||||
Sbjct: 1491 ggcgacgg 1484



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>dbj|AK071510.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023095G15, full
           insert sequence
          Length = 1150

 Score = 48.1 bits (24), Expect = 0.012
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                   
Query: 161 tggtcttgaacggcacatagttcttgagcgactgggtgatgccctggatggaggcg 216
           |||||||||| ||||| ||| |||||||||| | |  || ||||||||||||||||
Sbjct: 934 tggtcttgaagggcacgtaggtcttgagcgagtcgaggacgccctggatggaggcg 879



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>gb|AC084549.1|CBRG31K21 Caenorhabditis briggsae cosmid G31K21, complete sequence
          Length = 25837

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 80    tttttctcgagaaaaatctta 100
             |||||||||||||||||||||
Sbjct: 18971 tttttctcgagaaaaatctta 18991



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>gb|AC105982.10| Mus musculus chromosome 15, clone RP24-159I1, complete sequence
          Length = 168547

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 39     aaaaatatcaatcacacaga 58
              ||||||||||||||||||||
Sbjct: 131996 aaaaatatcaatcacacaga 131977



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>gb|AY658678.1| Synthetic construct Peudomonas aeruginosa clone FLH041531.01F
           PA2185 gene, partial cds
          Length = 885

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 201 gccctggatggaggcgacgg 220
           ||||||||||||||||||||
Sbjct: 727 gccctggatggaggcgacgg 746



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>ref|XM_504072.1| Yarrowia lipolytica CLIB122, YALI0E17677g predicted mRNA
          Length = 1002

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 13  tcccaccagattttccacat 32
           ||||||||||||||||||||
Sbjct: 880 tcccaccagattttccacat 899



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>emb|AL772136.5| Zebrafish DNA sequence from clone CH211-188C22 in linkage group 7
              Contains a novel gene similar PLCB (phospholipase C beta),
              a novel gene similar to PPP1R14B (protein phosphatase 1,
              regulatory inhibitor subunit 14B) and part of a novel gene
              similar to BRMS1 (breast cancer metastasis-suppressor 1),
              complete sequence
          Length = 147497

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 151    attcacaacttggtcttgaa 170
              ||||||||||||||||||||
Sbjct: 111412 attcacaacttggtcttgaa 111431



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>gb|AC011029.7| Homo sapiens chromosome 8, clone RP11-202L1, complete sequence
          Length = 161123

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    cagattttccacattcatct 38
             ||||||||||||||||||||
Sbjct: 17669 cagattttccacattcatct 17688



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>gb|AC051632.18| Oryza sativa chromosome 10 BAC OSJNBa0012L23 genomic sequence, complete
             sequence
          Length = 153182

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 31    attcatctaaaaatatcaat 50
             ||||||||||||||||||||
Sbjct: 91201 attcatctaaaaatatcaat 91182



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>gb|AC153725.3| Medicago truncatula clone mth2-78c5, complete sequence
          Length = 137377

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 91     aaaaatcttaaacaaacaca 110
              ||||||||||||||||||||
Sbjct: 119801 aaaaatcttaaacaaacaca 119820



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>emb|BX322794.6| Zebrafish DNA sequence from clone RP71-44B8 in linkage group 23, complete
              sequence
          Length = 144572

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 151    attcacaacttggtcttgaa 170
              ||||||||||||||||||||
Sbjct: 102517 attcacaacttggtcttgaa 102498



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>gb|AC073510.7| Homo sapiens chromosome 8, clone RP11-240O2, complete sequence
          Length = 133085

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    cagattttccacattcatct 38
             ||||||||||||||||||||
Sbjct: 95552 cagattttccacattcatct 95571



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 31       attcatctaaaaatatcaat 50
                ||||||||||||||||||||
Sbjct: 17736081 attcatctaaaaatatcaat 17736062



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>gb|AC009499.4| Homo sapiens BAC clone RP11-510D10 from 2, complete sequence
          Length = 176570

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 89     agaaaaatcttaaacaaaca 108
              ||||||||||||||||||||
Sbjct: 136086 agaaaaatcttaaacaaaca 136105



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>gb|AE004645.1| Pseudomonas aeruginosa PAO1, section 206 of 529 of the complete
            genome
          Length = 11187

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 201  gccctggatggaggcgacgg 220
            ||||||||||||||||||||
Sbjct: 6282 gccctggatggaggcgacgg 6301



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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 203     cctggatggaggcgacggtg 222
               ||||||||||||||||||||
Sbjct: 2691014 cctggatggaggcgacggtg 2691033



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>gb|AC119935.17| Mus musculus chromosome 15, clone RP24-261L5, complete sequence
          Length = 163746

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 39     aaaaatatcaatcacacaga 58
              ||||||||||||||||||||
Sbjct: 149187 aaaaatatcaatcacacaga 149206



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>emb|BX649591.7| Zebrafish DNA sequence from clone CH211-181H6 in linkage group 20,
            complete sequence
          Length = 70838

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 150  cattcacaacttggtcttga 169
            ||||||||||||||||||||
Sbjct: 4519 cattcacaacttggtcttga 4538



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>emb|BX465868.6| Zebrafish DNA sequence from clone DKEY-42I9 in linkage group 22, complete
              sequence
          Length = 222195

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 151    attcacaacttggtcttgaa 170
              ||||||||||||||||||||
Sbjct: 158132 attcacaacttggtcttgaa 158113



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 31       attcatctaaaaatatcaat 50
                ||||||||||||||||||||
Sbjct: 17745334 attcatctaaaaatatcaat 17745315



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>emb|CR848818.10| Zebrafish DNA sequence from clone DKEY-38O19 in linkage group 16,
             complete sequence
          Length = 208738

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 150   cattcacaacttggtcttga 169
             ||||||||||||||||||||
Sbjct: 41746 cattcacaacttggtcttga 41765



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>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica
          Length = 4224103

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 13      tcccaccagattttccacat 32
               ||||||||||||||||||||
Sbjct: 2085284 tcccaccagattttccacat 2085303


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,578,855
Number of Sequences: 3902068
Number of extensions: 2578855
Number of successful extensions: 55170
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55007
Number of HSP's gapped (non-prelim): 163
length of query: 235
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 213
effective length of database: 17,147,199,772
effective search space: 3652353551436
effective search space used: 3652353551436
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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