| Clone Name | rbaet13e05 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 63.9 bits (32), Expect = 2e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 153 tcacaacttggtcttgaacggcacatagttcttgagcgactgggtgatgccctggatgga 212 |||| ||||||||||||| || || |||| ||||||||||| | ||| ||||| |||||| Sbjct: 20843878 tcacgacttggtcttgaaggggacgtagtgcttgagcgactcgctgacgccctcgatgga 20843819 Query: 213 ggcgacgg 220 |||||||| Sbjct: 20843818 ggcgacgg 20843811 Score = 48.1 bits (24), Expect = 0.012 Identities = 48/56 (85%) Strand = Plus / Minus Query: 161 tggtcttgaacggcacatagttcttgagcgactgggtgatgccctggatggaggcg 216 |||||||||| ||||| ||| |||||||||| | | || |||||||||||||||| Sbjct: 20865810 tggtcttgaagggcacgtaggtcttgagcgagtcgaggacgccctggatggaggcg 20865755
>dbj|AP003613.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0458E11 Length = 148798 Score = 63.9 bits (32), Expect = 2e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 153 tcacaacttggtcttgaacggcacatagttcttgagcgactgggtgatgccctggatgga 212 |||| ||||||||||||| || || |||| ||||||||||| | ||| ||||| |||||| Sbjct: 98553 tcacgacttggtcttgaaggggacgtagtgcttgagcgactcgctgacgccctcgatgga 98494 Query: 213 ggcgacgg 220 |||||||| Sbjct: 98493 ggcgacgg 98486 Score = 48.1 bits (24), Expect = 0.012 Identities = 48/56 (85%) Strand = Plus / Minus Query: 161 tggtcttgaacggcacatagttcttgagcgactgggtgatgccctggatggaggcg 216 |||||||||| ||||| ||| |||||||||| | | || |||||||||||||||| Sbjct: 120485 tggtcttgaagggcacgtaggtcttgagcgagtcgaggacgccctggatggaggcg 120430
>dbj|AK102763.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107D14, full insert sequence Length = 1890 Score = 63.9 bits (32), Expect = 2e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 153 tcacaacttggtcttgaacggcacatagttcttgagcgactgggtgatgccctggatgga 212 |||| ||||||||||||| || || |||| ||||||||||| | ||| ||||| |||||| Sbjct: 1554 tcacgacttggtcttgaaggggacgtagtgcttgagcgactcgctgacgccctcgatgga 1495 Query: 213 ggcgacgg 220 |||||||| Sbjct: 1494 ggcgacgg 1487
>dbj|AK058304.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-H01, full insert sequence Length = 1823 Score = 63.9 bits (32), Expect = 2e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 153 tcacaacttggtcttgaacggcacatagttcttgagcgactgggtgatgccctggatgga 212 |||| ||||||||||||| || || |||| ||||||||||| | ||| ||||| |||||| Sbjct: 1551 tcacgacttggtcttgaaggggacgtagtgcttgagcgactcgctgacgccctcgatgga 1492 Query: 213 ggcgacgg 220 |||||||| Sbjct: 1491 ggcgacgg 1484
>dbj|AK071510.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023095G15, full insert sequence Length = 1150 Score = 48.1 bits (24), Expect = 0.012 Identities = 48/56 (85%) Strand = Plus / Minus Query: 161 tggtcttgaacggcacatagttcttgagcgactgggtgatgccctggatggaggcg 216 |||||||||| ||||| ||| |||||||||| | | || |||||||||||||||| Sbjct: 934 tggtcttgaagggcacgtaggtcttgagcgagtcgaggacgccctggatggaggcg 879
>gb|AC084549.1|CBRG31K21 Caenorhabditis briggsae cosmid G31K21, complete sequence Length = 25837 Score = 42.1 bits (21), Expect = 0.76 Identities = 21/21 (100%) Strand = Plus / Plus Query: 80 tttttctcgagaaaaatctta 100 ||||||||||||||||||||| Sbjct: 18971 tttttctcgagaaaaatctta 18991
>gb|AC105982.10| Mus musculus chromosome 15, clone RP24-159I1, complete sequence Length = 168547 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 aaaaatatcaatcacacaga 58 |||||||||||||||||||| Sbjct: 131996 aaaaatatcaatcacacaga 131977
>gb|AY658678.1| Synthetic construct Peudomonas aeruginosa clone FLH041531.01F PA2185 gene, partial cds Length = 885 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 gccctggatggaggcgacgg 220 |||||||||||||||||||| Sbjct: 727 gccctggatggaggcgacgg 746
>ref|XM_504072.1| Yarrowia lipolytica CLIB122, YALI0E17677g predicted mRNA Length = 1002 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 tcccaccagattttccacat 32 |||||||||||||||||||| Sbjct: 880 tcccaccagattttccacat 899
>emb|AL772136.5| Zebrafish DNA sequence from clone CH211-188C22 in linkage group 7 Contains a novel gene similar PLCB (phospholipase C beta), a novel gene similar to PPP1R14B (protein phosphatase 1, regulatory inhibitor subunit 14B) and part of a novel gene similar to BRMS1 (breast cancer metastasis-suppressor 1), complete sequence Length = 147497 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 attcacaacttggtcttgaa 170 |||||||||||||||||||| Sbjct: 111412 attcacaacttggtcttgaa 111431
>gb|AC011029.7| Homo sapiens chromosome 8, clone RP11-202L1, complete sequence Length = 161123 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 cagattttccacattcatct 38 |||||||||||||||||||| Sbjct: 17669 cagattttccacattcatct 17688
>gb|AC051632.18| Oryza sativa chromosome 10 BAC OSJNBa0012L23 genomic sequence, complete sequence Length = 153182 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 attcatctaaaaatatcaat 50 |||||||||||||||||||| Sbjct: 91201 attcatctaaaaatatcaat 91182
>gb|AC153725.3| Medicago truncatula clone mth2-78c5, complete sequence Length = 137377 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 aaaaatcttaaacaaacaca 110 |||||||||||||||||||| Sbjct: 119801 aaaaatcttaaacaaacaca 119820
>emb|BX322794.6| Zebrafish DNA sequence from clone RP71-44B8 in linkage group 23, complete sequence Length = 144572 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 attcacaacttggtcttgaa 170 |||||||||||||||||||| Sbjct: 102517 attcacaacttggtcttgaa 102498
>gb|AC073510.7| Homo sapiens chromosome 8, clone RP11-240O2, complete sequence Length = 133085 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 cagattttccacattcatct 38 |||||||||||||||||||| Sbjct: 95552 cagattttccacattcatct 95571
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 attcatctaaaaatatcaat 50 |||||||||||||||||||| Sbjct: 17736081 attcatctaaaaatatcaat 17736062
>gb|AC009499.4| Homo sapiens BAC clone RP11-510D10 from 2, complete sequence Length = 176570 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 agaaaaatcttaaacaaaca 108 |||||||||||||||||||| Sbjct: 136086 agaaaaatcttaaacaaaca 136105
>gb|AE004645.1| Pseudomonas aeruginosa PAO1, section 206 of 529 of the complete genome Length = 11187 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 gccctggatggaggcgacgg 220 |||||||||||||||||||| Sbjct: 6282 gccctggatggaggcgacgg 6301
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 cctggatggaggcgacggtg 222 |||||||||||||||||||| Sbjct: 2691014 cctggatggaggcgacggtg 2691033
>gb|AC119935.17| Mus musculus chromosome 15, clone RP24-261L5, complete sequence Length = 163746 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 aaaaatatcaatcacacaga 58 |||||||||||||||||||| Sbjct: 149187 aaaaatatcaatcacacaga 149206
>emb|BX649591.7| Zebrafish DNA sequence from clone CH211-181H6 in linkage group 20, complete sequence Length = 70838 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 cattcacaacttggtcttga 169 |||||||||||||||||||| Sbjct: 4519 cattcacaacttggtcttga 4538
>emb|BX465868.6| Zebrafish DNA sequence from clone DKEY-42I9 in linkage group 22, complete sequence Length = 222195 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 attcacaacttggtcttgaa 170 |||||||||||||||||||| Sbjct: 158132 attcacaacttggtcttgaa 158113
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 attcatctaaaaatatcaat 50 |||||||||||||||||||| Sbjct: 17745334 attcatctaaaaatatcaat 17745315
>emb|CR848818.10| Zebrafish DNA sequence from clone DKEY-38O19 in linkage group 16, complete sequence Length = 208738 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 cattcacaacttggtcttga 169 |||||||||||||||||||| Sbjct: 41746 cattcacaacttggtcttga 41765
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 tcccaccagattttccacat 32 |||||||||||||||||||| Sbjct: 2085284 tcccaccagattttccacat 2085303 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,578,855 Number of Sequences: 3902068 Number of extensions: 2578855 Number of successful extensions: 55170 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55007 Number of HSP's gapped (non-prelim): 163 length of query: 235 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 213 effective length of database: 17,147,199,772 effective search space: 3652353551436 effective search space used: 3652353551436 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)