>NQRB_CHLCV (Q823P2) Na(+)-translocating NADH-quinone reductase subunit B (EC|
           1.6.5.-) (Na(+)-translocating NQR subunit B) (Na(+)-NQR
           subunit B) (NQR complex subunit B) (NQR-1 subunit B)
          Length = 503

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
 Frame = -2

Query: 343 LSFCNPTTSSSVYGENNQ*AWLCMMHVQNFRSHLTFRLLADLHGCS----ACKSYIFLLL 176
           L+  N    + VYG  N       +H+  FRS+L+F +  D+   S     CK ++ LL+
Sbjct: 68  LAIWNSGVQALVYGSGNAQLMESFLHISGFRSYLSF-IFNDIGVFSILWTGCKIFLPLLI 126

Query: 175 LHWN 164
           + ++
Sbjct: 127 ISYS 130

>FABH_HELHP (P59813) 3-oxoacyl-[acyl-carrier-protein] synthase 3 (EC 2.3.1.41)|
           (3-oxoacyl-[acyl-carrier-protein] synthase III)
           (Beta-ketoacyl-ACP synthase III) (KAS III)
          Length = 332

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = +2

Query: 173 KKKKKNVRFAGTTAMKVCEETKCEM*SEVLNMHHAEPCSLIIFSIYTAAGSRITEAQSE 349
           ++K+  ++  G    KV  +T      E+LN HH  P   + F I   A  RI  A  E
Sbjct: 210 QEKQSFIQMKGNETFKVAVKTLVSEVKEILNTHHINPQD-VSFFIPHQANLRIINAVGE 267

>GLTT_BACCA (P24944) Proton/sodium-glutamate symport protein|
           (Glutamate-aspartate carrier protein)
          Length = 421

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -3

Query: 258 TSDHISHFVSSQTFMAVVPANLTXXXXXFTGTNASVVFFDVIKSDGNACL 109
           T++ + H    +TF+ +VP N+       TG    ++FF V+   G A +
Sbjct: 121 TTNEVQHHSMVETFVNIVPKNI--FESLSTGDMLPIIFFSVMFGLGVAAI 168

>REP_BUCBP (Q89A21) ATP-dependent DNA helicase rep (EC 3.6.1.-)|
          Length = 670

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +2

Query: 209 TAMKVCEETKCEM*SEVLNMHHAEPCSLIIFSIYTAAGSRITEAQSE 349
           TA+    +  CEM S +LN+      +L+  S + A G  I +++ E
Sbjct: 51  TAITFTNKAACEMKSRILNVLSVNVSNLVKISTFHALGLEIIKSEIE 97

>TIMD2_MOUSE (Q8R183) T-cell immunoglobulin and mucin domain-containing protein|
           2 precursor (TIMD-2) (T cell membrane protein 2) (TIM-2)
          Length = 305

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
 Frame = +2

Query: 98  VGLLKHALPSLFITSKKTTDAFVPVKKKKKNVRFA-------GTTAMKVCEETKCE 244
           VG+   AL  L + S      +V +K+K +++ F        G +  KV E T+CE
Sbjct: 234 VGISIAALLILMLLSTMVITRYVVMKRKSESLSFVAFPISKIGASPKKVVERTRCE 289

>SYC_BUCAI (P57558) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA|
           ligase) (CysRS)
          Length = 464

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 128 LFITSKKTTDAFVPVKKKKKNVRFAGTTAMKVC 226
           +F T   T + F P+KK + N+   G T    C
Sbjct: 4   IFNTLTSTKEIFTPIKKNRVNLYVCGVTVYDFC 36


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,896,679
Number of Sequences: 219361
Number of extensions: 810277
Number of successful extensions: 1619
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1619
length of database: 80,573,946
effective HSP length: 92
effective length of database: 60,392,734
effective search space used: 1449425616
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)