| Clone Name | rbaet13b09 |
|---|---|
| Clone Library Name | barley_pub |
>PORA_WHEAT (Q41578) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 388 Score = 143 bits (361), Expect = 2e-34 Identities = 71/72 (98%), Positives = 71/72 (98%) Frame = -2 Query: 453 FQKFVTKGFVSEAEPGKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARK 274 FQKFVTKGFVSEAE GKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARK Sbjct: 317 FQKFVTKGFVSEAESGKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARK 376 Query: 273 VWELSEKLVGLA 238 VWELSEKLVGLA Sbjct: 377 VWELSEKLVGLA 388
>POR_AVESA (P15904) Protochlorophyllide reductase (EC 1.3.1.33) (PCR)| (NADPH-protochlorophyllide oxidoreductase) (POR) (Fragment) Length = 313 Score = 142 bits (357), Expect = 5e-34 Identities = 70/72 (97%), Positives = 70/72 (97%) Frame = -2 Query: 453 FQKFVTKGFVSEAEPGKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARK 274 FQKFVTKGFVSEAE GKRLAQVV EPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARK Sbjct: 242 FQKFVTKGFVSEAESGKRLAQVVGEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARK 301 Query: 273 VWELSEKLVGLA 238 VWELSEKLVGLA Sbjct: 302 VWELSEKLVGLA 313
>PORA_HORVU (P13653) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 388 Score = 141 bits (355), Expect = 9e-34 Identities = 70/72 (97%), Positives = 70/72 (97%) Frame = -2 Query: 453 FQKFVTKGFVSEAEPGKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARK 274 FQKFVTKGFVSEAE GKRLAQVVAEP LTKSGVYWSWNKDSASFENQLSQEASDPEKARK Sbjct: 317 FQKFVTKGFVSEAESGKRLAQVVAEPVLTKSGVYWSWNKDSASFENQLSQEASDPEKARK 376 Query: 273 VWELSEKLVGLA 238 VWELSEKLVGLA Sbjct: 377 VWELSEKLVGLA 388
>POR_DAUCA (Q9SDT1) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 398 Score = 134 bits (336), Expect = 1e-31 Identities = 64/72 (88%), Positives = 70/72 (97%) Frame = -2 Query: 453 FQKFVTKGFVSEAEPGKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARK 274 FQK++TKG+VSEAE GKRLAQVV+EPSLTKSGVYWSWNKDSASFENQLS+EASD EKARK Sbjct: 327 FQKYITKGYVSEAESGKRLAQVVSEPSLTKSGVYWSWNKDSASFENQLSEEASDVEKARK 386 Query: 273 VWELSEKLVGLA 238 VWE+SEKLVGLA Sbjct: 387 VWEVSEKLVGLA 398
>PORA_CUCSA (Q41249) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 398 Score = 132 bits (331), Expect = 5e-31 Identities = 64/72 (88%), Positives = 69/72 (95%) Frame = -2 Query: 453 FQKFVTKGFVSEAEPGKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARK 274 FQKF+T+G+VSE E GKRLAQVV+EPSLTKSGVYWSWNK+SASFENQLSQEASD EKARK Sbjct: 327 FQKFITQGYVSEDEAGKRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSQEASDAEKARK 386 Query: 273 VWELSEKLVGLA 238 VWELSEKLVGLA Sbjct: 387 VWELSEKLVGLA 398
>PORB_HORVU (Q42850) Protochlorophyllide reductase B, chloroplast precursor (EC| 1.3.1.33) (PCR B) (NADPH-protochlorophyllide oxidoreductase B) (POR B) Length = 395 Score = 131 bits (330), Expect = 7e-31 Identities = 63/72 (87%), Positives = 69/72 (95%) Frame = -2 Query: 453 FQKFVTKGFVSEAEPGKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARK 274 FQK++TKG+VSE E GKRLAQVV+EPSLTKSGVYWSWNK+SASFENQLS+EASD EKARK Sbjct: 324 FQKYITKGYVSEEEAGKRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSEEASDTEKARK 383 Query: 273 VWELSEKLVGLA 238 VWELSEKLVGLA Sbjct: 384 VWELSEKLVGLA 395
>PORA_ARATH (Q42536) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 405 Score = 130 bits (326), Expect = 2e-30 Identities = 62/72 (86%), Positives = 69/72 (95%) Frame = -2 Query: 453 FQKFVTKGFVSEAEPGKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARK 274 FQK++TKG+VSE+E GKRLAQVVA+PSLTKSGVYWSWNK SASFENQLSQEASD EKAR+ Sbjct: 334 FQKYITKGYVSESEAGKRLAQVVADPSLTKSGVYWSWNKTSASFENQLSQEASDVEKARR 393 Query: 273 VWELSEKLVGLA 238 VWE+SEKLVGLA Sbjct: 394 VWEVSEKLVGLA 405
>POR_PEA (Q01289) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 399 Score = 127 bits (319), Expect = 1e-29 Identities = 61/72 (84%), Positives = 67/72 (93%) Frame = -2 Query: 453 FQKFVTKGFVSEAEPGKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARK 274 FQK++TKG+VSE E GKRLAQVV++PSLTKSGVYWSWN SASFENQLSQEASD EKARK Sbjct: 328 FQKYITKGYVSEEESGKRLAQVVSDPSLTKSGVYWSWNNASASFENQLSQEASDAEKARK 387 Query: 273 VWELSEKLVGLA 238 VWE+SEKLVGLA Sbjct: 388 VWEVSEKLVGLA 399
>PORB_ARATH (P21218) Protochlorophyllide reductase B, chloroplast precursor (EC| 1.3.1.33) (PCR B) (NADPH-protochlorophyllide oxidoreductase B) (POR B) Length = 401 Score = 126 bits (317), Expect = 2e-29 Identities = 60/72 (83%), Positives = 67/72 (93%) Frame = -2 Query: 453 FQKFVTKGFVSEAEPGKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARK 274 FQK++TKG+VSE E GKRLAQVV++PSLTKSGVYWSWN SASFENQLS+EASD EKARK Sbjct: 330 FQKYITKGYVSETESGKRLAQVVSDPSLTKSGVYWSWNNASASFENQLSEEASDVEKARK 389 Query: 273 VWELSEKLVGLA 238 VWE+SEKLVGLA Sbjct: 390 VWEISEKLVGLA 401
>PORC_ARATH (O48741) Protochlorophyllide reductase C, chloroplast precursor (EC| 1.3.1.33) (PCR C) (NADPH-protochlorophyllide oxidoreductase C) (POR C) Length = 401 Score = 120 bits (302), Expect = 1e-27 Identities = 56/72 (77%), Positives = 67/72 (93%) Frame = -2 Query: 453 FQKFVTKGFVSEAEPGKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARK 274 FQK++TKG+VSE E GKRLAQVV++PSL KSGVYWSWN +S+SFENQLS+EASD EKA+K Sbjct: 330 FQKYITKGYVSEEEAGKRLAQVVSDPSLGKSGVYWSWNNNSSSFENQLSKEASDAEKAKK 389 Query: 273 VWELSEKLVGLA 238 +WE+SEKLVGLA Sbjct: 390 LWEVSEKLVGLA 401
>POR_MARPA (O80333) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 458 Score = 118 bits (296), Expect = 6e-27 Identities = 52/71 (73%), Positives = 66/71 (92%) Frame = -2 Query: 453 FQKFVTKGFVSEAEPGKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARK 274 FQK++TKG+VSE E GKR+AQVV++P L+KSGVYWSWNKDS SFEN+LS+EAS+PEKA++ Sbjct: 387 FQKYITKGYVSEEEAGKRMAQVVSDPKLSKSGVYWSWNKDSGSFENELSEEASNPEKAKR 446 Query: 273 VWELSEKLVGL 241 +WELSE+L GL Sbjct: 447 LWELSERLSGL 457
>POR_CHLRE (Q39617) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 397 Score = 98.6 bits (244), Expect = 6e-21 Identities = 41/72 (56%), Positives = 58/72 (80%) Frame = -2 Query: 453 FQKFVTKGFVSEAEPGKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARK 274 FQK++TKG+VSE E G+RLA V+++P L KSG YWSW+ + SF+NQ+S+E +D KA K Sbjct: 325 FQKYITKGYVSEEEAGRRLAAVISDPKLNKSGAYWSWSSTTGSFDNQVSEEVADDSKASK 384 Query: 273 VWELSEKLVGLA 238 +W++S KLVGL+ Sbjct: 385 LWDISAKLVGLS 396
>POR_PLEBO (O66148) Light-dependent protochlorophyllide reductase (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) (LPOR) Length = 322 Score = 79.7 bits (195), Expect = 3e-15 Identities = 39/76 (51%), Positives = 54/76 (71%), Gaps = 4/76 (5%) Frame = -2 Query: 453 FQKFVTKGFVSEAEPGKRLAQVVAEPSLTKSGVYWSW----NKDSASFENQLSQEASDPE 286 FQK +T G+VS+ G+R AQVVA+P +SGV+WSW + SF +LS++ +D Sbjct: 247 FQKNITGGYVSQELAGERTAQVVADPEFKQSGVHWSWGNRQKEGRESFVQELSEKVTDDA 306 Query: 285 KARKVWELSEKLVGLA 238 KA+++WELSEKLVGLA Sbjct: 307 KAKRMWELSEKLVGLA 322
>POR_SYNY3 (Q59987) Light-dependent protochlorophyllide reductase (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) (LPOR) Length = 322 Score = 77.4 bits (189), Expect = 2e-14 Identities = 39/75 (52%), Positives = 55/75 (73%), Gaps = 4/75 (5%) Frame = -2 Query: 453 FQKFVTKGFVSEAEPGKRLAQVVAEPSLTKSGVYWSW-NKDSA---SFENQLSQEASDPE 286 FQK VTKG+VS+ G+R+A VVA+ SGV+WSW N+ A +F +LS++ SD + Sbjct: 247 FQKNVTKGYVSQELAGERVAMVVADDKFKDSGVHWSWGNRQQAGREAFVQELSEQGSDAQ 306 Query: 285 KARKVWELSEKLVGL 241 KA+++W+LSEKLVGL Sbjct: 307 KAQRMWDLSEKLVGL 321
>RDH13_MOUSE (Q8CEE7) Retinol dehydrogenase 13 (EC 1.1.1.-)| Length = 334 Score = 35.8 bits (81), Expect = 0.052 Identities = 26/66 (39%), Positives = 35/66 (53%) Frame = -2 Query: 417 AEPGKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA 238 A+P LA VAE SG Y+ ++ A S EA D E AR++W S +LVGLA Sbjct: 268 AQPSTYLA--VAEELENVSGKYFDGLREKAP-----SPEAEDEEVARRLWTESARLVGLA 320 Query: 237 *STANP 220 + +P Sbjct: 321 MAHGSP 326
>DAPA_XANCP (Q8P9V6) Dihydrodipicolinate synthase (EC 4.2.1.52) (DHDPS)| Length = 302 Score = 33.9 bits (76), Expect = 0.20 Identities = 17/35 (48%), Positives = 20/35 (57%) Frame = +1 Query: 343 PAPVHAGLCQAGLRHHLRQPLAGLRLRHEPLGDEL 447 P PV A L +AG+ H LR PL L H+P D L Sbjct: 250 PIPVKALLQRAGIGHGLRLPLLPLSAAHQPAADRL 284
>DAPA_XANAC (Q8PLN5) Dihydrodipicolinate synthase (EC 4.2.1.52) (DHDPS)| Length = 302 Score = 33.9 bits (76), Expect = 0.20 Identities = 17/35 (48%), Positives = 20/35 (57%) Frame = +1 Query: 343 PAPVHAGLCQAGLRHHLRQPLAGLRLRHEPLGDEL 447 P PV A L +AG+ H LR PL L H+P D L Sbjct: 250 PIPVKALLQRAGIGHGLRLPLLPLSAAHQPAADRL 284
>RDH13_HUMAN (Q8NBN7) Retinol dehydrogenase 13 (EC 1.1.1.-)| Length = 331 Score = 32.7 bits (73), Expect = 0.44 Identities = 24/59 (40%), Positives = 30/59 (50%) Frame = -2 Query: 417 AEPGKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGL 241 A+P LA VAE SG Y+ K A + EA D E AR++W S +LVGL Sbjct: 268 AQPSTYLA--VAEELADVSGKYFDGLKQKAP-----APEAEDEEVARRLWAESARLVGL 319
>FIG2_YEAST (P25653) Factor-induced gene 2 precursor (Cell wall adhesin FIG2)| Length = 1609 Score = 32.0 bits (71), Expect = 0.74 Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 2/87 (2%) Frame = +2 Query: 200 RCMHASMGFAVDHASPTSFSLSSQTLRAFSGSLASWESWFSKDAESLFQLQYTPDFV--R 373 R H+S F + +P+S SL S T F+ S+ +SW S ++E L T DF Sbjct: 140 RTSHSSSSFELPVTAPSSSSLPSSTSLTFT-SVNPSQSWTSFNSEKSSALSSTIDFTSSE 198 Query: 374 LGSATTCASLLPGSASDTNPLVTNFWN 454 + +T+ SL + DT +T+ ++ Sbjct: 199 ISGSTSPKSL---ESFDTTGTITSSYS 222
>RDH14_HUMAN (Q9HBH5) Retinol dehydrogenase 14 (EC 1.1.1.-) (Alcohol| dehydrogenase PAN2) Length = 336 Score = 30.8 bits (68), Expect = 1.7 Identities = 13/27 (48%), Positives = 19/27 (70%) Frame = -2 Query: 321 ENQLSQEASDPEKARKVWELSEKLVGL 241 E +L +A D ARK+W++SE +VGL Sbjct: 308 EEELLPKAMDESVARKLWDISEVMVGL 334
>GANA_HUMIN (P83691) Arabinogalactan endo-1,4-beta-galactosidase (EC 3.2.1.89)| (Endo-1,4-beta-galactanase) (Galactanase) Length = 332 Score = 30.8 bits (68), Expect = 1.7 Identities = 16/37 (43%), Positives = 21/37 (56%) Frame = -3 Query: 113 QERPCEWPRECIDLVWKMYNFRQTLE**NRRPD*G*Q 3 Q P WP + +L WK+YN+ TL+ NR D G Q Sbjct: 92 QTTPAGWPSDINNLAWKLYNY--TLDSMNRFADAGIQ 126
>RDH14_MOUSE (Q9ERI6) Retinol dehydrogenase 14 (EC 1.1.1.-) (Alcohol| dehydrogenase PAN2) Length = 334 Score = 30.0 bits (66), Expect = 2.8 Identities = 12/27 (44%), Positives = 19/27 (70%) Frame = -2 Query: 321 ENQLSQEASDPEKARKVWELSEKLVGL 241 E +L +A D ARK+W++SE +VG+ Sbjct: 306 EEELLPKAMDESVARKLWDISEVMVGI 332
>WWOX_MOUSE (Q91WL8) WW domain-containing oxidoreductase (EC 1.1.1.-)| Length = 414 Score = 29.6 bits (65), Expect = 3.7 Identities = 12/21 (57%), Positives = 16/21 (76%) Frame = -2 Query: 309 SQEASDPEKARKVWELSEKLV 247 S+EA E AR +WELSE+L+ Sbjct: 385 SEEAQSEETARALWELSERLI 405
>RGS16_BOVIN (O46471) Regulator of G-protein signaling 16 (RGS16) (Retinally| abundant regulator of G-protein signaling) (RGS-R) Length = 202 Score = 29.3 bits (64), Expect = 4.8 Identities = 20/80 (25%), Positives = 31/80 (38%) Frame = +2 Query: 203 CMHASMGFAVDHASPTSFSLSSQTLRAFSGSLASWESWFSKDAESLFQLQYTPDFVRLGS 382 C A +DH + + Q A A W+ + +S + +P + L + Sbjct: 123 CSEAPKEVNIDHETRELTRTNLQAATAVCFDAAQWKVRALMEKDSYPRFLKSPAYRDLAT 182 Query: 383 ATTCASLLPGSASDTNPLVT 442 T AS P S+S PL T Sbjct: 183 QATAASASPSSSSPAEPLHT 202
>AMYI_SACDI (P29760) Glucoamylase S2 precursor (EC 3.2.1.3) (Glucan| 1,4-alpha-glucosidase) (1,4-alpha-D-glucan glucohydrolase) (GAII) Length = 768 Score = 29.3 bits (64), Expect = 4.8 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = -2 Query: 390 VVAEPSLTKSGVYWSWNKDSASFENQLSQEASDP 289 V+A PS T ++ W +DSA N + ++DP Sbjct: 372 VIASPSQTHPDYFYQWIRDSALTINSIVSHSADP 405
>ATXR3_ARATH (O23372) Probable histone-lysine N-methyltransferase ATXR3 (EC| 2.1.1.43) (Trithorax-related protein 3) (TRX-related protein 3) (Protein SET DOMAIN GROUP 2) Length = 2351 Score = 29.3 bits (64), Expect = 4.8 Identities = 21/56 (37%), Positives = 31/56 (55%) Frame = +1 Query: 31 YYSNVCRKLYIFHTRSMHSRGHSQGLSCVIELLKRRKHDNYQISLKKRQVEHRPAS 198 Y S+ CRKL +RS+HS +SQ + E L R + + SL+K +H+ AS Sbjct: 322 YGSSKCRKLSDDCSRSLHSDHYSQHSA---ERLYRDSYPSKNSSLEKYPRKHQDAS 374
>AMYH_SACDI (P04065) Glucoamylase S1 precursor (EC 3.2.1.3) (Glucan| 1,4-alpha-glucosidase) (1,4-alpha-D-glucan glucohydrolase) (GAI) Length = 767 Score = 29.3 bits (64), Expect = 4.8 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = -2 Query: 390 VVAEPSLTKSGVYWSWNKDSASFENQLSQEASDP 289 V+A PS T ++ W +DSA N + ++DP Sbjct: 371 VIASPSQTHPDYFYQWIRDSALTINSIVSHSADP 404
>TIE2_BRARE (O73791) Tyrosine-protein kinase receptor Tie-2 precursor (EC| 2.7.10.1) Length = 1116 Score = 28.9 bits (63), Expect = 6.3 Identities = 17/45 (37%), Positives = 25/45 (55%) Frame = +2 Query: 191 RRPRCMHASMGFAVDHASPTSFSLSSQTLRAFSGSLASWESWFSK 325 R+ R + FA+ H T+ +LSSQ L AFS +A S+ S+ Sbjct: 907 RKSRVLETDPAFAIAHR--TASTLSSQQLLAFSADVARGMSYLSQ 949
>NIFK_THIFE (P15052) Nitrogenase molybdenum-iron protein beta chain (EC| 1.18.6.1) (Nitrogenase component I) (Dinitrogenase) Length = 518 Score = 28.5 bits (62), Expect = 8.2 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Frame = -2 Query: 327 SFENQL-SQEASDPEKARKVWELSEKLVGLA*STANPMDACMHLGR 193 +FEN+L + + + ++ K WE EK + NP AC LGR Sbjct: 30 TFENRLPADQVARGQEWTKTWEYREKNFAREALSVNPDKACQPLGR 75
>WWOX_BRARE (Q803A8) WW domain-containing oxidoreductase (EC 1.1.1.-)| Length = 412 Score = 28.5 bits (62), Expect = 8.2 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = -2 Query: 309 SQEASDPEKARKVWELSEKLV 247 S +A DP A +WELSE+LV Sbjct: 382 SPQAQDPAAALSLWELSERLV 402
>Y2435_PHOPR (Q6LPF8) UPF0283 membrane protein PBPRA2435| Length = 348 Score = 28.5 bits (62), Expect = 8.2 Identities = 19/69 (27%), Positives = 27/69 (39%) Frame = -2 Query: 444 FVTKGFVSEAEPGKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWE 265 F TK EA+P A++ A+ +S + K E QLS + K R W Sbjct: 10 FKTKIVFDEAKPTDSDAELTAQVQFAESNTFLPEVKADDDIEEQLSHTLASKTKKRSSWF 69 Query: 264 LSEKLVGLA 238 + G A Sbjct: 70 KGLLIAGAA 78 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,215,182 Number of Sequences: 219361 Number of extensions: 966478 Number of successful extensions: 3172 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 3106 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3169 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2793557952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)