ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet12h09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_193176.1| Oryza sativa (japonica cultivar-group), predic... 157 3e-35
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 157 3e-35
3dbj|AP003350.3| Oryza sativa (japonica cultivar-group) genomic D... 157 3e-35
4dbj|AK101002.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 3e-35
5gb|AY107833.1| Zea mays PCO063938 mRNA sequence 137 3e-29
6ref|XM_467628.1| Oryza sativa (japonica cultivar-group), mRNA 82 1e-12
7dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 82 1e-12
8dbj|AP005319.3| Oryza sativa (japonica cultivar-group) genomic D... 82 1e-12
9dbj|AP004888.3| Oryza sativa (japonica cultivar-group) genomic D... 82 1e-12
10dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 80 5e-12
11dbj|AP004740.3| Oryza sativa (japonica cultivar-group) genomic D... 80 5e-12
12dbj|AP004993.3| Oryza sativa (japonica cultivar-group) genomic D... 74 3e-10
13dbj|AP004630.3| Oryza sativa (japonica cultivar-group) genomic D... 74 3e-10
14dbj|AK068185.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 3e-10
15emb|AL606631.2|OSJN00069 Oryza sativa genomic DNA, chromosome 4,... 72 1e-09
16dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 72 1e-09
17dbj|AK119922.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 1e-09
18gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 54 3e-04
19dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
20gb|AC140006.1| Oryza sativa (japonica cultivar-group) chromosome... 54 3e-04
21gb|AC104474.2| Oryza sativa (japonica cultivar-group) chromosome... 54 3e-04
22dbj|AK106150.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
23dbj|AK104714.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
24dbj|AK066587.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
25emb|AL353603.8| Human DNA sequence from clone RP11-25E5 on chrom... 44 0.28
26gb|AC124909.3| Equus caballus clone CH241-91H15, complete sequence 44 0.28
27gb|DP000020.1| Equus caballus target 1 genomic scaffold 44 0.28
28gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 42 1.1
29gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 42 1.1
30emb|AL391809.21| Human DNA sequence from clone RP11-47A4 on chro... 42 1.1
31ref|XM_792072.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 1.1
32emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 42 1.1
33emb|AL939121.1|SCO939121 Streptomyces coelicolor A3(2) complete ... 42 1.1
34gb|CP000016.1| Candidatus Blochmannia pennsylvanicus str. BPEN, ... 42 1.1
35gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 42 1.1
36gb|AC104396.7| Mus musculus BAC clone RP23-413J8 from chromosome... 40 4.4
37emb|AL390965.15| Human DNA sequence from clone RP11-640E11 on ch... 40 4.4
38gb|AC120035.6| Homo sapiens chromosome 8, clone RP11-1116K10, co... 40 4.4
39emb|BX248505.8| Zebrafish DNA sequence from clone CH211-87L2 in ... 40 4.4
40emb|BX572636.6| Zebrafish DNA sequence from clone CH211-192C1 in... 40 4.4
41gb|AC126565.6| Homo sapiens 12 BAC RP11-717F19 (Roswell Park Can... 40 4.4
42gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O1... 40 4.4
43gb|AC078805.13| Homo sapiens 3 BAC RP11-402E20 (Roswell Park Can... 40 4.4
44emb|BX255919.15| Zebrafish DNA sequence from clone DKEY-259P11 i... 40 4.4
45gb|AC068294.26|AC068294 Mus musculus 3 BAC RP23-418O21 (Roswell ... 40 4.4
46gb|AC087773.1|AC087773 Genomic Sequence For Lycopersicon esculen... 40 4.4
47gb|AC129915.6| Homo sapiens chromosome 8, clone CTD-3212A4, comp... 40 4.4
48dbj|BA000026.2| Mycoplasma penetrans HF-2 DNA, complete genome 40 4.4
49emb|AL953846.6| Zebrafish DNA sequence from clone CH211-244D10, ... 40 4.4
50gb|AC115078.11| Mus musculus chromosome 3, clone RP24-457B22, co... 40 4.4
51dbj|AB023041.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 4.4
52emb|BX950224.7| Zebrafish DNA sequence from clone DKEY-284G18 in... 40 4.4
53emb|CR931784.7| Zebrafish DNA sequence from clone DKEY-237H12 in... 40 4.4
54emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 40 4.4
55gb|AC147562.5| Mus musculus BAC clone RP23-239A13 from 3, comple... 40 4.4
56gb|AC133516.3| Mus musculus BAC clone RP23-260G15 from chromosom... 40 4.4 
>ref|NM_193176.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1437

 Score =  157 bits (79), Expect = 3e-35
 Identities = 121/135 (89%)
 Strand = Plus / Minus

                                                                        
Query: 195  cgatttcgggcagctgcaccgggtagcgggcgatgcagtcggcccacggcccgtcggcgt 254
            |||||||||| ||||| || |||||||||  |||||||||| |||| |||||||||||||
Sbjct: 1432 cgatttcggggagctggacggggtagcggtggatgcagtcgacccagggcccgtcggcgt 1373

                                                                        
Query: 255  cgccggctggcttgatgcactcccacgcgacgctgttgcagtcgaatccggcgccgaagg 314
            ||   || ||||||| |||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 1372 cgggcgccggcttgacgcactcccacgccacgctgttgcagtcgaagccggcgccgaagg 1313

                           
Query: 315  agatcatccacaccc 329
            |||||||||||||||
Sbjct: 1312 agatcatccacaccc 1298
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  157 bits (79), Expect = 3e-35
 Identities = 121/135 (89%)
 Strand = Plus / Minus

                                                                            
Query: 195      cgatttcgggcagctgcaccgggtagcgggcgatgcagtcggcccacggcccgtcggcgt 254
                |||||||||| ||||| || |||||||||  |||||||||| |||| |||||||||||||
Sbjct: 19056852 cgatttcggggagctggacggggtagcggtggatgcagtcgacccagggcccgtcggcgt 19056793

                                                                            
Query: 255      cgccggctggcttgatgcactcccacgcgacgctgttgcagtcgaatccggcgccgaagg 314
                ||   || ||||||| |||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 19056792 cgggcgccggcttgacgcactcccacgccacgctgttgcagtcgaagccggcgccgaagg 19056733

                               
Query: 315      agatcatccacaccc 329
                |||||||||||||||
Sbjct: 19056732 agatcatccacaccc 19056718
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>dbj|AP003350.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0702H08
          Length = 166899

 Score =  157 bits (79), Expect = 3e-35
 Identities = 121/135 (89%)
 Strand = Plus / Minus

                                                                         
Query: 195   cgatttcgggcagctgcaccgggtagcgggcgatgcagtcggcccacggcccgtcggcgt 254
             |||||||||| ||||| || |||||||||  |||||||||| |||| |||||||||||||
Sbjct: 22269 cgatttcggggagctggacggggtagcggtggatgcagtcgacccagggcccgtcggcgt 22210

                                                                         
Query: 255   cgccggctggcttgatgcactcccacgcgacgctgttgcagtcgaatccggcgccgaagg 314
             ||   || ||||||| |||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 22209 cgggcgccggcttgacgcactcccacgccacgctgttgcagtcgaagccggcgccgaagg 22150

                            
Query: 315   agatcatccacaccc 329
             |||||||||||||||
Sbjct: 22149 agatcatccacaccc 22135
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>dbj|AK101002.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023147G07, full
            insert sequence
          Length = 1933

 Score =  157 bits (79), Expect = 3e-35
 Identities = 121/135 (89%)
 Strand = Plus / Minus

                                                                        
Query: 195  cgatttcgggcagctgcaccgggtagcgggcgatgcagtcggcccacggcccgtcggcgt 254
            |||||||||| ||||| || |||||||||  |||||||||| |||| |||||||||||||
Sbjct: 1508 cgatttcggggagctggacggggtagcggtggatgcagtcgacccagggcccgtcggcgt 1449

                                                                        
Query: 255  cgccggctggcttgatgcactcccacgcgacgctgttgcagtcgaatccggcgccgaagg 314
            ||   || ||||||| |||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 1448 cgggcgccggcttgacgcactcccacgccacgctgttgcagtcgaagccggcgccgaagg 1389

                           
Query: 315  agatcatccacaccc 329
            |||||||||||||||
Sbjct: 1388 agatcatccacaccc 1374
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>gb|AY107833.1| Zea mays PCO063938 mRNA sequence
          Length = 1113

 Score =  137 bits (69), Expect = 3e-29
 Identities = 128/145 (88%), Gaps = 2/145 (1%)
 Strand = Plus / Minus

                                                                       
Query: 186 tgtccttgtcgatttcgggcagctgcaccgggtagcgggcgatgcagtcggcccacggcc 245
           |||||||| ||| |||||| || ||||||||||||||| |||||||||||||||| ||||
Sbjct: 795 tgtccttggcgacttcggggagatgcaccgggtagcggtcgatgcagtcggcccagggcc 736

                                                                       
Query: 246 cgtcggcgtcg-ccggctggcttgatgcactcccacgcgacgctgttgcagtcgaatccg 304
           || |||||||| ||||| ||||||| ||||||| | || || | | |||| |||||||||
Sbjct: 735 cgccggcgtcggccggc-ggcttgacgcactccaatgccacacagctgcactcgaatccg 677

                                    
Query: 305 gcgccgaaggagatcatccacaccc 329
           |||||||||||||||||||||||||
Sbjct: 676 gcgccgaaggagatcatccacaccc 652
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>ref|XM_467628.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1458

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 95/113 (84%)
 Strand = Plus / Minus

                                                                        
Query: 215  gggtagcgggcgatgcagtcggcccacggcccgtcggcgtcgccggctggcttgatgcac 274
            |||||||||  |||||||  |||||| ||||||||||||| | |||| ||   |||||||
Sbjct: 1427 gggtagcggtggatgcaggtggcccatggcccgtcggcgttggcggcggggcggatgcac 1368

                                                                 
Query: 275  tcccacgcgacgctgttgcagtcgaatccggcgccgaaggagatcatccacac 327
            ||||||||| |||||||||| | ||| |||| |||||||  ||||||||||||
Sbjct: 1367 tcccacgcggcgctgttgcacttgaagccggagccgaagccgatcatccacac 1315
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 95/113 (84%)
 Strand = Plus / Minus

                                                                            
Query: 215      gggtagcgggcgatgcagtcggcccacggcccgtcggcgtcgccggctggcttgatgcac 274
                |||||||||  |||||||  |||||| ||||||||||||| | |||| ||   |||||||
Sbjct: 30520259 gggtagcggtggatgcaggtggcccatggcccgtcggcgttggcggcggggcggatgcac 30520200

                                                                     
Query: 275      tcccacgcgacgctgttgcagtcgaatccggcgccgaaggagatcatccacac 327
                ||||||||| |||||||||| | ||| |||| |||||||  ||||||||||||
Sbjct: 30520199 tcccacgcggcgctgttgcacttgaagccggagccgaagccgatcatccacac 30520147
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>dbj|AP005319.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0643A10
          Length = 187931

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 95/113 (84%)
 Strand = Plus / Minus

                                                                         
Query: 215   gggtagcgggcgatgcagtcggcccacggcccgtcggcgtcgccggctggcttgatgcac 274
             |||||||||  |||||||  |||||| ||||||||||||| | |||| ||   |||||||
Sbjct: 32267 gggtagcggtggatgcaggtggcccatggcccgtcggcgttggcggcggggcggatgcac 32208

                                                                  
Query: 275   tcccacgcgacgctgttgcagtcgaatccggcgccgaaggagatcatccacac 327
             ||||||||| |||||||||| | ||| |||| |||||||  ||||||||||||
Sbjct: 32207 tcccacgcggcgctgttgcacttgaagccggagccgaagccgatcatccacac 32155
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>dbj|AP004888.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0617A09
          Length = 134804

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 95/113 (84%)
 Strand = Plus / Minus

                                                                          
Query: 215    gggtagcgggcgatgcagtcggcccacggcccgtcggcgtcgccggctggcttgatgcac 274
              |||||||||  |||||||  |||||| ||||||||||||| | |||| ||   |||||||
Sbjct: 126307 gggtagcggtggatgcaggtggcccatggcccgtcggcgttggcggcggggcggatgcac 126248

                                                                   
Query: 275    tcccacgcgacgctgttgcagtcgaatccggcgccgaaggagatcatccacac 327
              ||||||||| |||||||||| | ||| |||| |||||||  ||||||||||||
Sbjct: 126247 tcccacgcggcgctgttgcacttgaagccggagccgaagccgatcatccacac 126195
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 79/92 (85%)
 Strand = Plus / Minus

                                                                           
Query: 236     gcccacggcccgtcggcgtcgccggctggcttgatgcactcccacgcgacgctgttgcag 295
               ||||||||||||||||||||||  || |||  |||||||||||||||  |||||||||| 
Sbjct: 8523554 gcccacggcccgtcggcgtcgcgcgccggcgagatgcactcccacgccgcgctgttgcac 8523495

                                               
Query: 296     tcgaatccggcgccgaaggagatcatccacac 327
               | ||| |||| |||||||  ||||||||||||
Sbjct: 8523494 ttgaaaccggagccgaagccgatcatccacac 8523463



 Score = 75.8 bits (38), Expect = 8e-11
 Identities = 86/102 (84%)
 Strand = Plus / Plus

                                                                           
Query: 226     gatgcagtcggcccacggcccgtcggcgtcgccggctggcttgatgcactcccacgcgac 285
               ||||| ||||||||| ||||||||||||| ||  || |||  |||||||||||||||| |
Sbjct: 8419629 gatgctgtcggcccatggcccgtcggcgttgcgcgccggcgagatgcactcccacgcggc 8419688

                                                         
Query: 286     gctgttgcagtcgaatccggcgccgaaggagatcatccacac 327
               ||||||||| | ||| |||| ||||||   ||||||||||||
Sbjct: 8419689 gctgttgcacttgaagccggagccgaacccgatcatccacac 8419730



 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 79/93 (84%)
 Strand = Plus / Plus

                                                                           
Query: 235     ggcccacggcccgtcggcgtcgccggctggcttgatgcactcccacgcgacgctgttgca 294
               |||||||||||||||| ||||||  || |||  |||||||||||||||  ||||||||||
Sbjct: 8609213 ggcccacggcccgtcgtcgtcgcgcgccggcgagatgcactcccacgccgcgctgttgca 8609272

                                                
Query: 295     gtcgaatccggcgccgaaggagatcatccacac 327
                | ||| |||| |||||||  ||||||||||||
Sbjct: 8609273 cttgaaaccggagccgaagccgatcatccacac 8609305



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 78/95 (82%), Gaps = 3/95 (3%)
 Strand = Plus / Plus

                                                                           
Query: 236     gcccacggcccgtcggcgtcgccggctggctt---gatgcactcccacgcgacgctgttg 292
               ||||||||||||||||||||||  || |||     |||||||||||||||  ||||||||
Sbjct: 8656163 gcccacggcccgtcggcgtcgcgcgccggcagcgagatgcactcccacgccgcgctgttg 8656222

                                                  
Query: 293     cagtcgaatccggcgccgaaggagatcatccacac 327
               || | ||| || |  |||||| |||||||||||||
Sbjct: 8656223 cacttgaaccccgacccgaagcagatcatccacac 8656257
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>dbj|AP004740.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0092H22
          Length = 165194

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 79/92 (85%)
 Strand = Plus / Minus

                                                                          
Query: 236    gcccacggcccgtcggcgtcgccggctggcttgatgcactcccacgcgacgctgttgcag 295
              ||||||||||||||||||||||  || |||  |||||||||||||||  |||||||||| 
Sbjct: 138255 gcccacggcccgtcggcgtcgcgcgccggcgagatgcactcccacgccgcgctgttgcac 138196

                                              
Query: 296    tcgaatccggcgccgaaggagatcatccacac 327
              | ||| |||| |||||||  ||||||||||||
Sbjct: 138195 ttgaaaccggagccgaagccgatcatccacac 138164



 Score = 75.8 bits (38), Expect = 8e-11
 Identities = 86/102 (84%)
 Strand = Plus / Plus

                                                                         
Query: 226   gatgcagtcggcccacggcccgtcggcgtcgccggctggcttgatgcactcccacgcgac 285
             ||||| ||||||||| ||||||||||||| ||  || |||  |||||||||||||||| |
Sbjct: 34330 gatgctgtcggcccatggcccgtcggcgttgcgcgccggcgagatgcactcccacgcggc 34389

                                                       
Query: 286   gctgttgcagtcgaatccggcgccgaaggagatcatccacac 327
             ||||||||| | ||| |||| ||||||   ||||||||||||
Sbjct: 34390 gctgttgcacttgaagccggagccgaacccgatcatccacac 34431
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>dbj|AP004993.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0037N01
          Length = 174085

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 79/93 (84%)
 Strand = Plus / Plus

                                                                         
Query: 235   ggcccacggcccgtcggcgtcgccggctggcttgatgcactcccacgcgacgctgttgca 294
             |||||||||||||||| ||||||  || |||  |||||||||||||||  ||||||||||
Sbjct: 24195 ggcccacggcccgtcgtcgtcgcgcgccggcgagatgcactcccacgccgcgctgttgca 24254

                                              
Query: 295   gtcgaatccggcgccgaaggagatcatccacac 327
              | ||| |||| |||||||  ||||||||||||
Sbjct: 24255 cttgaaaccggagccgaagccgatcatccacac 24287



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 78/95 (82%), Gaps = 3/95 (3%)
 Strand = Plus / Plus

                                                                         
Query: 236   gcccacggcccgtcggcgtcgccggctggctt---gatgcactcccacgcgacgctgttg 292
             ||||||||||||||||||||||  || |||     |||||||||||||||  ||||||||
Sbjct: 71145 gcccacggcccgtcggcgtcgcgcgccggcagcgagatgcactcccacgccgcgctgttg 71204

                                                
Query: 293   cagtcgaatccggcgccgaaggagatcatccacac 327
             || | ||| || |  |||||| |||||||||||||
Sbjct: 71205 cacttgaaccccgacccgaagcagatcatccacac 71239
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>dbj|AP004630.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0031A09
          Length = 162511

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 79/93 (84%)
 Strand = Plus / Plus

                                                                         
Query: 235   ggcccacggcccgtcggcgtcgccggctggcttgatgcactcccacgcgacgctgttgca 294
             |||||||||||||||| ||||||  || |||  |||||||||||||||  ||||||||||
Sbjct: 84032 ggcccacggcccgtcgtcgtcgcgcgccggcgagatgcactcccacgccgcgctgttgca 84091

                                              
Query: 295   gtcgaatccggcgccgaaggagatcatccacac 327
              | ||| |||| |||||||  ||||||||||||
Sbjct: 84092 cttgaaaccggagccgaagccgatcatccacac 84124



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 78/95 (82%), Gaps = 3/95 (3%)
 Strand = Plus / Plus

                                                                          
Query: 236    gcccacggcccgtcggcgtcgccggctggctt---gatgcactcccacgcgacgctgttg 292
              ||||||||||||||||||||||  || |||     |||||||||||||||  ||||||||
Sbjct: 130982 gcccacggcccgtcggcgtcgcgcgccggcagcgagatgcactcccacgccgcgctgttg 131041

                                                 
Query: 293    cagtcgaatccggcgccgaaggagatcatccacac 327
              || | ||| || |  |||||| |||||||||||||
Sbjct: 131042 cacttgaaccccgacccgaagcagatcatccacac 131076
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>dbj|AK068185.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013135C17, full
            insert sequence
          Length = 1669

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 79/93 (84%)
 Strand = Plus / Minus

                                                                        
Query: 235  ggcccacggcccgtcggcgtcgccggctggcttgatgcactcccacgcgacgctgttgca 294
            |||||||||||||||| ||||||  || |||  |||||||||||||||  ||||||||||
Sbjct: 1518 ggcccacggcccgtcgtcgtcgcgcgccggcgagatgcactcccacgccgcgctgttgca 1459

                                             
Query: 295  gtcgaatccggcgccgaaggagatcatccacac 327
             | ||| |||| |||||||  ||||||||||||
Sbjct: 1458 cttgaaaccggagccgaagccgatcatccacac 1426
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>emb|AL606631.2|OSJN00069 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0050O03,
             complete sequence
          Length = 140948

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                         
Query: 262   tggcttgatgcactcccacgcgacgctgttgcagtcgaatccggcgccgaaggagatcat 321
             ||||||||||||||||||| |||||||| |||||||||  || | || ||||||||||||
Sbjct: 65551 tggcttgatgcactcccacacgacgctgctgcagtcgatacctgggctgaaggagatcat 65492

                     
Query: 322   ccacaccc 329
              |||||||
Sbjct: 65491 gcacaccc 65484
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4,
              complete sequence
          Length = 35498469

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                          
Query: 262    tggcttgatgcactcccacgcgacgctgttgcagtcgaatccggcgccgaaggagatcat 321
              ||||||||||||||||||| |||||||| |||||||||  || | || ||||||||||||
Sbjct: 985832 tggcttgatgcactcccacacgacgctgctgcagtcgatacctgggctgaaggagatcat 985773

                      
Query: 322    ccacaccc 329
               |||||||
Sbjct: 985772 gcacaccc 985765
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>dbj|AK119922.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-183-G08, full
            insert sequence
          Length = 1580

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                        
Query: 262  tggcttgatgcactcccacgcgacgctgttgcagtcgaatccggcgccgaaggagatcat 321
            ||||||||||||||||||| |||||||| |||||||||  || | || ||||||||||||
Sbjct: 1431 tggcttgatgcactcccacacgacgctgctgcagtcgatacctgggctgaaggagatcat 1372

                    
Query: 322  ccacaccc 329
             |||||||
Sbjct: 1371 gcacaccc 1364
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                      
Query: 215     gggtagcgggcgatgcagtcggcccacggcccgtcggcg 253
               |||||||||  |||||||||| |||||||||||||||||
Sbjct: 6271409 gggtagcggtggatgcagtcgtcccacggcccgtcggcg 6271447
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                      
Query: 215     gggtagcgggcgatgcagtcggcccacggcccgtcggcg 253
               |||||||||  |||||||||| |||||||||||||||||
Sbjct: 6270622 gggtagcggtggatgcagtcgtcccacggcccgtcggcg 6270660
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>gb|AC140006.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNAa0090D11,
              complete sequence
          Length = 115403

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                     
Query: 215    gggtagcgggcgatgcagtcggcccacggcccgtcggcg 253
              |||||||||  |||||||||| |||||||||||||||||
Sbjct: 110020 gggtagcggtggatgcagtcgtcccacggcccgtcggcg 110058
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>gb|AC104474.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0024O21, complete sequence
          Length = 155651

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                    
Query: 215   gggtagcgggcgatgcagtcggcccacggcccgtcggcg 253
             |||||||||  |||||||||| |||||||||||||||||
Sbjct: 84617 gggtagcggtggatgcagtcgtcccacggcccgtcggcg 84655
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>dbj|AK106150.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-H08, full
            insert sequence
          Length = 1892

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                   
Query: 215  gggtagcgggcgatgcagtcggcccacggcccgtcggcg 253
            |||||||||  |||||||||| |||||||||||||||||
Sbjct: 1629 gggtagcggtggatgcagtcgtcccacggcccgtcggcg 1591
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>dbj|AK104714.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-H10, full
            insert sequence
          Length = 1892

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                   
Query: 215  gggtagcgggcgatgcagtcggcccacggcccgtcggcg 253
            |||||||||  |||||||||| |||||||||||||||||
Sbjct: 1629 gggtagcggtggatgcagtcgtcccacggcccgtcggcg 1591
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>dbj|AK066587.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074H08, full
            insert sequence
          Length = 1966

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                   
Query: 215  gggtagcgggcgatgcagtcggcccacggcccgtcggcg 253
            |||||||||  |||||||||| |||||||||||||||||
Sbjct: 1630 gggtagcggtggatgcagtcgtcccacggcccgtcggcg 1592
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>emb|AL353603.8| Human DNA sequence from clone RP11-25E5 on chromosome 10, complete
             sequence
          Length = 30525

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 119   atcaaatcaacatcattggcct 140
             ||||||||||||||||||||||
Sbjct: 15570 atcaaatcaacatcattggcct 15549
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>gb|AC124909.3| Equus caballus clone CH241-91H15, complete sequence
          Length = 171421

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 33     aataacagatattttagtttct 54
              ||||||||||||||||||||||
Sbjct: 137956 aataacagatattttagtttct 137935
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>gb|DP000020.1| Equus caballus target 1 genomic scaffold
          Length = 1907055

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 33      aataacagatattttagtttct 54
               ||||||||||||||||||||||
Sbjct: 1151424 aataacagatattttagtttct 1151403
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 279     acgcgacgctgttgcagtcga 299
               |||||||||||||||||||||
Sbjct: 3198303 acgcgacgctgttgcagtcga 3198283
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 279    acgcgacgctgttgcagtcga 299
              |||||||||||||||||||||
Sbjct: 782847 acgcgacgctgttgcagtcga 782867
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>emb|AL391809.21| Human DNA sequence from clone RP11-47A4 on chromosome 1 Contains the 5'
             end of the RYR2 gene for ryanodine receptor 2 (cardiac)
             and three CpG islands, complete sequence
          Length = 167548

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 36    aacagatattttagtttctct 56
             |||||||||||||||||||||
Sbjct: 45020 aacagatattttagtttctct 45040
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>ref|XM_792072.1| PREDICTED: Strongylocentrotus purpuratus similar to Leukotriene A-4
           hydrolase (LTA-4 hydrolase) (Leukotriene A(4) hydrolase)
           (LOC592555), mRNA
          Length = 1854

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 165 tggttggttaaacccttcaca 185
           |||||||||||||||||||||
Sbjct: 360 tggttggttaaacccttcaca 380
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 279    acgcgacgctgttgcagtcga 299
              |||||||||||||||||||||
Sbjct: 591493 acgcgacgctgttgcagtcga 591513
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>emb|AL939121.1|SCO939121 Streptomyces coelicolor A3(2) complete genome; segment 18/29
          Length = 292100

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 241   cggcccgtcggcgtcgccggc 261
             |||||||||||||||||||||
Sbjct: 22189 cggcccgtcggcgtcgccggc 22169
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>gb|CP000016.1| Candidatus Blochmannia pennsylvanicus str. BPEN, complete genome
          Length = 791654

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 7      acatattttttatacatattc 27
              |||||||||||||||||||||
Sbjct: 719645 acatattttttatacatattc 719665
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 279    acgcgacgctgttgcagtcga 299
              |||||||||||||||||||||
Sbjct: 544713 acgcgacgctgttgcagtcga 544733
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>gb|AC104396.7| Mus musculus BAC clone RP23-413J8 from chromosome 3, complete sequence
          Length = 195860

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 4     taaacatattttttatacat 23
             ||||||||||||||||||||
Sbjct: 52725 taaacatattttttatacat 52744
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>emb|AL390965.15| Human DNA sequence from clone RP11-640E11 on chromosome 13 Contains a
             solute carrier family 25 (mitochondrial carrier; adenine
             nucleotide translocator), member 5 (SLC25A5) pseudogene,
             complete sequence
          Length = 92179

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 99    ttcaataatggatacaatac 118
             ||||||||||||||||||||
Sbjct: 11150 ttcaataatggatacaatac 11169
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>gb|AC120035.6| Homo sapiens chromosome 8, clone RP11-1116K10, complete sequence
          Length = 151045

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 58   taatggaaagatcatacaga 77
            ||||||||||||||||||||
Sbjct: 5936 taatggaaagatcatacaga 5955
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>emb|BX248505.8| Zebrafish DNA sequence from clone CH211-87L2 in linkage group 14,
              complete sequence
          Length = 189425

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 42     tattttagtttctctttaat 61
              ||||||||||||||||||||
Sbjct: 175107 tattttagtttctctttaat 175088
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>emb|BX572636.6| Zebrafish DNA sequence from clone CH211-192C1 in linkage group 8,
              complete sequence
          Length = 169758

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 3      ataaacatattttttatacatattcgcaaaaa 34
              |||||| ||||||||||||| ||| |||||||
Sbjct: 128920 ataaacttattttttatacaaattagcaaaaa 128951
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>gb|AC126565.6| Homo sapiens 12 BAC RP11-717F19 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 47620

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 3     ataaacatattttttatacatatt 26
             |||||||||| |||||||||||||
Sbjct: 32797 ataaacatatattttatacatatt 32820
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>gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence
          Length = 70347

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     acatattttttatacatatt 26
             ||||||||||||||||||||
Sbjct: 35266 acatattttttatacatatt 35247
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>gb|AC078805.13| Homo sapiens 3 BAC RP11-402E20 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 110992

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 136   ggcctgaactaagtaaggtg 155
             ||||||||||||||||||||
Sbjct: 70891 ggcctgaactaagtaaggtg 70910
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>emb|BX255919.15| Zebrafish DNA sequence from clone DKEY-259P11 in linkage group 8,
              complete sequence
          Length = 168607

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 42     tattttagtttctctttaat 61
              ||||||||||||||||||||
Sbjct: 142006 tattttagtttctctttaat 141987
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>gb|AC068294.26|AC068294 Mus musculus 3 BAC RP23-418O21 (Roswell Park Cancer Institute Mouse BAC
             Library) complete sequence
          Length = 201750

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 49    gtttctctttaatggaaaga 68
             ||||||||||||||||||||
Sbjct: 45339 gtttctctttaatggaaaga 45358
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>gb|AC087773.1|AC087773 Genomic Sequence For Lycopersicon esculentum Clone T62O11, complete
             sequence
          Length = 70497

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     acatattttttatacatatt 26
             ||||||||||||||||||||
Sbjct: 35266 acatattttttatacatatt 35247
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>gb|AC129915.6| Homo sapiens chromosome 8, clone CTD-3212A4, complete sequence
          Length = 162359

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 58     taatggaaagatcatacaga 77
              ||||||||||||||||||||
Sbjct: 107750 taatggaaagatcatacaga 107769
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>dbj|BA000026.2| Mycoplasma penetrans HF-2 DNA, complete genome
          Length = 1358633

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 29     caaaaataacagatatttta 48
              ||||||||||||||||||||
Sbjct: 465582 caaaaataacagatatttta 465601
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>emb|AL953846.6| Zebrafish DNA sequence from clone CH211-244D10, complete sequence
          Length = 153939

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     aaacatattttttatacata 24
             ||||||||||||||||||||
Sbjct: 57784 aaacatattttttatacata 57803
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>gb|AC115078.11| Mus musculus chromosome 3, clone RP24-457B22, complete sequence
          Length = 179789

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 49   gtttctctttaatggaaaga 68
            ||||||||||||||||||||
Sbjct: 4282 gtttctctttaatggaaaga 4263
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>dbj|AB023041.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MPE11
          Length = 83650

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 44   ttttagtttctctttaatgg 63
            ||||||||||||||||||||
Sbjct: 7831 ttttagtttctctttaatgg 7850
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>emb|BX950224.7| Zebrafish DNA sequence from clone DKEY-284G18 in linkage group 18,
             complete sequence
          Length = 155246

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 116   tacatcaaatcaacatcattggcc 139
             ||||||||||| ||||||||||||
Sbjct: 46400 tacatcaaatccacatcattggcc 46377
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>emb|CR931784.7| Zebrafish DNA sequence from clone DKEY-237H12 in linkage group 14,
              complete sequence
          Length = 223042

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 50     tttctctttaatggaaagat 69
              ||||||||||||||||||||
Sbjct: 110842 tttctctttaatggaaagat 110823
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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 246    cgtcggcgtcgccggctggc 265
              ||||||||||||||||||||
Sbjct: 800865 cgtcggcgtcgccggctggc 800884
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>gb|AC147562.5| Mus musculus BAC clone RP23-239A13 from 3, complete sequence
          Length = 167633

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 4      taaacatattttttatacat 23
              ||||||||||||||||||||
Sbjct: 108731 taaacatattttttatacat 108750
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>gb|AC133516.3| Mus musculus BAC clone RP23-260G15 from chromosome 10, complete
             sequence
          Length = 203750

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 111   tacaatacatcaaatcaaca 130
             ||||||||||||||||||||
Sbjct: 97018 tacaatacatcaaatcaaca 96999



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 111   tacaatacatcaaatcaaca 130
             ||||||||||||||||||||
Sbjct: 96534 tacaatacatcaaatcaaca 96553


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,265,217
Number of Sequences: 3902068
Number of extensions: 3265217
Number of successful extensions: 74699
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74129
Number of HSP's gapped (non-prelim): 570
length of query: 332
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 310
effective length of database: 17,147,199,772
effective search space: 5315631929320
effective search space used: 5315631929320
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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