ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet12g08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ROM2_YEAST (P51862) RHO1 GDP-GTP exchange protein 2 29 2.6
2PA24_LATLA (Q8UUI2) Phospholipase A2 PC16 precursor (EC 3.1.1.4)... 28 4.4
3FTSI_BUCBP (Q89AQ0) Peptidoglycan synthetase ftsI (EC 2.4.1.129)... 28 4.4
4PHT21_ARATH (Q38954) Inorganic phosphate transporter 2-1, chloro... 28 5.7
5PA23_LATLA (Q8UUI3) Phospholipase A2 PC14 precursor (EC 3.1.1.4)... 28 5.7
6PA22_LATLA (Q8UUI4) Phospholipase A2 PC10 precursor (EC 3.1.1.4)... 28 5.7
7PA21B_LATLA (P19000) Phospholipase A2 P'513 precursor (EC 3.1.1.... 28 5.7
8WBS14_HUMAN (Q9NP71) Williams-Beuren syndrome chromosome region ... 27 9.8

>ROM2_YEAST (P51862) RHO1 GDP-GTP exchange protein 2|
          Length = 1356

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +2

Query: 182  HMSLSISGSCTG*RAMQSAHGPSASPAGLMHSHATLLQSN 301
            H+S    G C G R + +AH  S S     H H  L + N
Sbjct: 1138 HVSFFAEGDCNGKRLIVTAHSSSHSIKYFEHEHPLLAEKN 1177



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>PA24_LATLA (Q8UUI2) Phospholipase A2 PC16 precursor (EC 3.1.1.4)|
           (Phosphatidylcholine 2-acylhydrolase)
          Length = 145

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 16/32 (50%), Positives = 17/32 (53%)
 Frame = -2

Query: 309 GAGFDCNSVAWECIKPAGDADGPWADCIARYP 214
           G G  CNS   EC +   D D   ADC ARYP
Sbjct: 100 GGGPYCNSKT-ECQRFVCDCDVRAADCFARYP 130



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>FTSI_BUCBP (Q89AQ0) Peptidoglycan synthetase ftsI (EC 2.4.1.129)|
           (Peptidoglycan glycosyltransferase 3)
           (Penicillin-binding protein 3) (PBP-3)
          Length = 576

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 51  FSLMERSYRTGISFAGFNNGYNTSNQHHWPELSKV 155
           +S  E    T +   G  NG   +N+ HW +L KV
Sbjct: 381 YSKFELGKSTNLGLIGERNGVLNTNKKHWSDLDKV 415



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>PHT21_ARATH (Q38954) Inorganic phosphate transporter 2-1, chloroplast precursor|
           (H(+)/Pi cotransporter) (AtPht2;1)
          Length = 587

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 10/56 (17%)
 Frame = +3

Query: 87  SFAGFNNGYNTSNQHHWPELSKVMKLWLVKP----------FTCPCRFRAAAPGSG 224
           S  GF   Y  +    W  L+KV   W++ P          + C  RF  +AP  G
Sbjct: 269 SMVGFGLVYGGAGAVFWSSLAKVASSWVISPILGALVSFLVYKCIRRFVYSAPNPG 324



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>PA23_LATLA (Q8UUI3) Phospholipase A2 PC14 precursor (EC 3.1.1.4)|
           (Phosphatidylcholine 2-acylhydrolase)
          Length = 145

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -2

Query: 330 RVWMISFGAGFD---CNSVAWECIKPAGDADGPWADCIARYP 214
           ++ M S+  G D   CNS   EC +   D D   ADC ARYP
Sbjct: 90  KLTMYSYYCGGDGPYCNSKT-ECQRFVCDCDVRAADCFARYP 130



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>PA22_LATLA (Q8UUI4) Phospholipase A2 PC10 precursor (EC 3.1.1.4)|
           (Phosphatidylcholine 2-acylhydrolase)
          Length = 145

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -2

Query: 330 RVWMISFGAGFD---CNSVAWECIKPAGDADGPWADCIARYP 214
           ++ M S+  G D   CNS   EC +   D D   ADC ARYP
Sbjct: 90  KLTMYSYYCGGDGPYCNSKT-ECQRFVCDCDVRAADCFARYP 130



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>PA21B_LATLA (P19000) Phospholipase A2 P'513 precursor (EC 3.1.1.4)|
           (Phosphatidylcholine 2-acylhydrolase)
          Length = 145

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -2

Query: 330 RVWMISFGAGFD---CNSVAWECIKPAGDADGPWADCIARYP 214
           ++ M S+  G D   CNS   EC +   D D   ADC ARYP
Sbjct: 90  KLTMYSYYCGGDGPYCNSKT-ECQRFVCDCDVRAADCFARYP 130



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>WBS14_HUMAN (Q9NP71) Williams-Beuren syndrome chromosome region 14 protein (WS|
           basic-helix-loop-helix leucine zipper protein) (WS-bHLH)
           (Mlx interactor) (MLX-interacting protein-like)
          Length = 852

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = -3

Query: 263 QPATPTGRGPTASPATRCSCPKSTRTCEGFNQP*LHHL 150
           +P  P+ RG  ASP T      S  T  G N P L  L
Sbjct: 494 KPPAPSPRGQKASPPTLAPATASPPTTAGSNNPCLTQL 531


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,525,151
Number of Sequences: 219361
Number of extensions: 936409
Number of successful extensions: 2501
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2501
length of database: 80,573,946
effective HSP length: 85
effective length of database: 61,928,261
effective search space used: 1486278264
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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