| Clone Name | rbaet12f11 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X05576.1|HVTHIOR1 Barley mRNA for leaf-specific thionin (clone DB4) Length = 637 Score = 825 bits (416), Expect = 0.0 Identities = 459/472 (97%), Gaps = 1/472 (0%) Strand = Plus / Minus Query: 6 atcacataatatatccatggatcttttatattaagccaagggtacaaatagattcatcgt 65 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 637 atcacataatatatccatggaacttttatattaagccaagggtacaaatagattcatcgt 578 Query: 66 ggcgactcttattggaacaagggaaaaagacaaatacataagtaagatgatacattggct 125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 577 ggcgactcttattggaacaagggaaaaagacaaatacataagtaagatgatacattggct 518 Query: 126 tccatacagctgatggtatcaagattattcaagacaaaatgactatacgaccttggccat 185 ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct: 517 tccatacagctgatggtatcaagattattcaagacaaaatgacaatacgaccatggccat 458 Query: 186 agaaatcatgcacaagaacgcatgattaggcttcaacagactgaatgactgcaccatcat 245 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 457 agaaatcatgcacaagaaggcatgattaggcttcaacagactgaatgactgcaccatcat 398 Query: 246 tacagaaacgggcacatgcgttgctgcagagtcccatgtcgaatttcatcttttggccac 305 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 397 tacagaaacgggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggccac 338 Query: 306 ggaaaacattgtccacgttgtcacagacagaattcctgcatccaatggtgcagtactgag 365 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | Sbjct: 337 ggaaaacattgtccatgttgtcacagacagaattcctgcatccaatggtgcagtactgcg 278 Query: 366 tgacatctggttcaccggattcagggagaagattcagtttaggatagtcactaggacatt 425 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 277 tgacatctggttcaccggattcagggagaagattcagtttaggatagtcactagggcatt 218 Query: 426 ttgaaccgcttatgattttacaaccac-agcacctgcacagactggacggga 476 ||| ||| |||||||||||||||| || ||||||||| |||||||||||||| Sbjct: 217 ttggaccacttatgattttacaacgacaagcacctgcgcagactggacggga 166
>emb|X05587.1|HVTHIOR2 Barley mRNA for leaf-specific thionin (clone DC4) Length = 658 Score = 779 bits (393), Expect = 0.0 Identities = 457/477 (95%), Gaps = 1/477 (0%) Strand = Plus / Minus Query: 1 agtgtatcacataatatatccatggatcttttatattaagccaagggtacaaatagattc 60 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 649 agtgtatcacataatatatccatggaacttttatattaagccaagggtacaaatagattc 590 Query: 61 atcgtggcgactcttattggaacaagggaaaaagacaaatacataagtaagatgatacat 120 ||||||||||| ||||||||||||||||||||| | |||| ||||||||||||||||||| Sbjct: 589 atcgtggcgacccttattggaacaagggaaaaacagaaatgcataagtaagatgatacat 530 Query: 121 tggcttccatacagctgatggtatcaagattattcaagacaaaatgactatacgaccttg 180 | |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 529 ttccttcgatacagctgatggtatcaagattattcaagacaaaatgacaatacgaccttg 470 Query: 181 gccatagaaatcatgcacaagaacgcatgattaggcttcaacagactgaatgactgcacc 240 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 469 gccatagaaatcatgcacaagaaggcatgattaggcttcaacagactgaatgactgcacc 410 Query: 241 atcattacagaaacgggcacatgcgttgctgcagagtcccatgtcgaatttcatcttttg 300 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 409 atcattacaaaaacgggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttg 350 Query: 301 gccacggaaaacattgtccacgttgtcacagacagaattcctgcatccaatggtgcagta 360 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 349 gccacggaaaacattgtccatgttgtcacagacagaattcctgcatccaatggtgcagta 290 Query: 361 ctgagtgacatctggttcaccggattcagggagaagattcagtttaggatagtcactagg 420 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 289 ctgagtgacatctggttcaccggattcagggagaagattaagtttaggatagtcactagg 230 Query: 421 acattttgaaccgcttatgattttacaaccac-agcacctgcacagactggacggga 476 ||||||| ||| |||||||||||||||| || ||||||||| |||||||||||||| Sbjct: 229 gcattttggaccacttatgattttacaacgacaagcacctgcgcagactggacggga 173
>emb|X05588.1|HVTHIOR3 Barley mRNA for leaf-specific thionin (clone DF2) Length = 453 Score = 694 bits (350), Expect = 0.0 Identities = 430/454 (94%), Gaps = 2/454 (0%) Strand = Plus / Minus Query: 16 atatccatggatcttttatattaagccaagggtacaaatagattcatcgtggcgactctt 75 ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 453 atatccatggaacttt-atattaagccaagggtacaaatagattcatcgtggcgaccctt 395 Query: 76 attggaacaagggaaaaagacaaatacataagtaagatgatacattggcttccatacagc 135 |||||||||||||||||| | |||| |||||||||||||||||||| |||| ||||||| Sbjct: 394 attggaacaagggaaaaacagaaatgcataagtaagatgatacatttccttcgatacagc 335 Query: 136 tgatggtatcaagattattcaagacaaaatgactatacgaccttggccatagaaatcatg 195 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 334 tgatggtatcaagattattcaagacaaaatgacaatacgaccttggccatagaaatcatg 275 Query: 196 cacaagaacgcatgattaggcttcaacagactgaatgactgcaccatcattacagaaacg 255 |||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||| Sbjct: 274 cacaagaaggcatgattaggattcaacagactgaatgactgcaccatcattacaaaaacg 215 Query: 256 ggcacatgcgttgctgcagagtcccatgtcgaatttcatcttttggccacggaaaacatt 315 ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| Sbjct: 214 ggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggccatggaaaacatt 155 Query: 316 gtccacgttgtcacagacagaattcctgcatccaatggtgcagtactgagtgacatctgg 375 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 154 gtccatgttgtcacagacagaattcctgcatccaatggtgcagtactgagtgacatcggg 95 Query: 376 ttcaccggattcagggagaagattcagtttaggatagtcactaggacattttgaaccgct 435 |||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||| || Sbjct: 94 ttcaccggattcagggagaagattaagtttaggatagtcactagggcattttggaccact 35 Query: 436 tatgattttacaaccac-agcacctgcacagact 468 |||||||||||||| || ||||||||| |||||| Sbjct: 34 tatgattttacaacgacaagcacctgcgcagact 1
>gb|L36882.1|BLYBTH6T Hordeum vulgare thionin (bth6) gene, complete cds Length = 2406 Score = 579 bits (292), Expect = e-162 Identities = 307/312 (98%) Strand = Plus / Minus Query: 1 agtgtatcacataatatatccatggatcttttatattaagccaagggtacaaatagattc 60 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 2342 agtgtatcacataatatatccatggaacttttatattaagccaagggtacaaatagattc 2283 Query: 61 atcgtggcgactcttattggaacaagggaaaaagacaaatacataagtaagatgatacat 120 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2282 atcgtggcgactcttgttggaacaagggaaaaagacaaatacataagtaagatgatacat 2223 Query: 121 tggcttccatacagctgatggtatcaagattattcaagacaaaatgactatacgaccttg 180 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 2222 tggcttccatacagctgatggtatcaagattattcaagacaaaatgacaatacgaccttg 2163 Query: 181 gccatagaaatcatgcacaagaacgcatgattaggcttcaacagactgaatgactgcacc 240 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 2162 gccatagaaatcatgcacaagaaggcatgattaggcttcaacagactgaatgactgcacc 2103 Query: 241 atcattacagaaacgggcacatgcgttgctgcagagtcccatgtcgaatttcatcttttg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 2102 atcattacagaaacgggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttg 2043 Query: 301 gccacggaaaac 312 |||||||||||| Sbjct: 2042 gccacggaaaac 2031 Score = 141 bits (71), Expect = 2e-30 Identities = 93/99 (93%), Gaps = 1/99 (1%) Strand = Plus / Minus Query: 379 accggattcagggagaagattcagtttaggatagtcactaggacattttgaaccgcttat 438 |||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| Sbjct: 1776 accggattcagggagaagattcagtttaggatagtcactagggcattttggaccacttat 1717 Query: 439 gattttacaaccac-agcacctgcacagactggacggga 476 ||||||||||| || ||||||||| |||||||||||||| Sbjct: 1716 gattttacaacgacaagcacctgcgcagactggacggga 1678 Score = 123 bits (62), Expect = 6e-25 Identities = 68/70 (97%) Strand = Plus / Minus Query: 312 cattgtccacgttgtcacagacagaattcctgcatccaatggtgcagtactgagtgacat 371 ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1937 cattgtccatgttgtcacagacagaattcgtgcatccaatggtgcagtactgagtgacat 1878 Query: 372 ctggttcacc 381 |||||||||| Sbjct: 1877 ctggttcacc 1868
>gb|M19048.1|BLYTHNC Barley leaf specific thionin mRNA, complete cds, clone pKG1940 Length = 663 Score = 549 bits (277), Expect = e-153 Identities = 405/445 (91%), Gaps = 2/445 (0%) Strand = Plus / Minus Query: 10 cataatatatccatggatcttttatattaagccaagggtacaaatagattcatcgtggcg 69 ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| Sbjct: 658 cataatatatccatggaacttttatattaagccaagggtataaatagattcatcgtgggt 599 Query: 70 actcttattggaacaagggaaaaag-acaaatacataagtaagatgatacattggcttcc 128 ||||||||||||| ||||||||| | |||||||||| |||||||||||||| ||||| Sbjct: 598 tctcttattggaacgagggaaaaaacagaaatacataactaagatgatacatttgcttcg 539 Query: 129 atacagctgatggtatcaagattattcaagacaaaatgactatacgaccttggccataga 188 || | | |||||||||||||||| || || | |||||||| | ||||||||||||||||| Sbjct: 538 at-ctggtgatggtatcaagattgttgaacagaaaatgacaaaacgaccttggccataga 480 Query: 189 aatcatgcacaagaacgcatgattaggcttcaacagactgaatgactgcaccatcattac 248 |||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 479 aatcatgcccaagaaggcatgattaggcttcaacagactgaatgacttcaccatcattac 420 Query: 249 agaaacgggcacatgcgttgctgcagagtcccatgtcgaatttcatcttttggccacgga 308 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 419 agaaacgggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggccacggg 360 Query: 309 aaacattgtccacgttgtcacagacagaattcctgcatccaatggtgcagtactgagtga 368 |||||||||||| |||||||||||| ||| ||| ||||||||| |||||||||| ||| Sbjct: 359 aaacattgtccatgttgtcacagacggaagtccggcatccaattgtgcagtactcagtcg 300 Query: 369 catctggttcaccggattcagggagaagattcagtttaggatagtcactaggacattttg 428 ||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||| Sbjct: 299 catttggttcaccggattcagggagaagattcagcttaggatagtccctaggacatgttg 240 Query: 429 aaccgcttatgattttacaaccaca 453 ||||||||||||||||||||||| Sbjct: 239 ggccgcttatgattttacaaccaca 215
>emb|X05590.1|HVTHIOR5 Barley mRNA for leaf-specific thionin (clone DD3) Length = 491 Score = 533 bits (269), Expect = e-148 Identities = 397/437 (90%), Gaps = 2/437 (0%) Strand = Plus / Minus Query: 18 atccatggatcttttatattaagccaagggtacaaatagattcatcgtggcgactcttat 77 ||||||||| |||||||||||||||||||| | ||||||||||||||||| ||||||||| Sbjct: 491 atccatggaacttttatattaagccaagggcataaatagattcatcgtggtgactcttat 432 Query: 78 tggaacaagggaaaaag-acaaatacataagtaagatgatacattggcttccatacagct 136 |||||| ||||||||| | |||||||||| |||||||||||||| ||||| || | | | Sbjct: 431 tggaacgagggaaaaaacagaaatacataactaagatgatacatttgcttcgat-ctggt 373 Query: 137 gatggtatcaagattattcaagacaaaatgactatacgaccttggccatagaaatcatgc 196 ||||||||||||||| || || | ||||||| | ||||||||||||||||||||||||| Sbjct: 372 gatggtatcaagattgttgaacagaaaatgaaaaaacgaccttggccatagaaatcatgc 313 Query: 197 acaagaacgcatgattaggcttcaacagactgaatgactgcaccatcattacagaaacgg 256 |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 312 ccaagaaggcatgattaggcttcaacagactgaatgacttcaccatcattacagaaacgg 253 Query: 257 gcacatgcgttgctgcagagtcccatgtcgaatttcatcttttggccacggaaaacattg 316 |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| Sbjct: 252 gcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggccacgggaaacattg 193 Query: 317 tccacgttgtcacagacagaattcctgcatccaatggtgcagtactgagtgacatctggt 376 |||| |||||||||||| ||| ||||||||||||| |||||||||| ||| ||| |||| Sbjct: 192 tccaggttgtcacagacggaagtcctgcatccaattgtgcagtactcagtcgcatttggt 133 Query: 377 tcaccggattcagggagaagattcagtttaggatagtcactaggacattttgaaccgctt 436 |||||||||||||||||||||||||| ||||||||||| |||||||| ||| |||||| Sbjct: 132 tcaccggattcagggagaagattcagcttaggatagtccctaggacaggttgggccgctt 73 Query: 437 atgattttacaaccaca 453 ||||||||||||||||| Sbjct: 72 atgattttacaaccaca 56
>emb|X05589.1|HVTHIOR4 Barley mRNA for leaf-specific thionin (clone DG3) Length = 544 Score = 500 bits (252), Expect = e-138 Identities = 368/404 (91%), Gaps = 2/404 (0%) Strand = Plus / Minus Query: 51 aaatagattcatcgtggcgactcttattggaacaagggaaaaag-acaaatacataagta 109 ||||||||||||||||||||||||||||||||| ||||||||| | |||||||||| || Sbjct: 544 aaatagattcatcgtggcgactcttattggaacgagggaaaaaacagaaatacataacta 485 Query: 110 agatgatacattggcttccatacagctgatggtatcaagattattcaagacaaaatgact 169 |||||||||||| ||||| || | |||||||||||||||| || || | |||||||| Sbjct: 484 agatgatacatttgcttcgatgtgg-tgatggtatcaagattgttgaacagaaaatgaca 426 Query: 170 atacgaccttggccatagaaatcatgcacaagaacgcatgattaggcttcaacagactga 229 | ||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||| Sbjct: 425 aaacgaccttggccatagaaatcatgcccaagaaggcatgattaggcttcaagagactga 366 Query: 230 atgactgcaccatcattacagaaacgggcacatgcgttgctgcagagtcccatgtcgaat 289 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 365 atgacttcaccatcattacagaaacgggcacatgcgttgctgcagagtcccatgtcgaat 306 Query: 290 ttcatcttttggccacggaaaacattgtccacgttgtcacagacagaattcctgcatcca 349 ||||||| |||||||||| |||||||||||| |||||||||||| ||| ||||||||||| Sbjct: 305 ttcatctcttggccacgggaaacattgtccatgttgtcacagacggaagtcctgcatcca 246 Query: 350 atggtgcagtactgagtgacatctggttcaccggattcagggagaagattcagtttagga 409 || |||||||||| ||| ||| |||||||||||||||||||||||||||||| |||||| Sbjct: 245 attgtgcagtactcagtcgcatttggttcaccggattcagggagaagattcagcttagga 186 Query: 410 tagtcactaggacattttgaaccgcttatgattttacaaccaca 453 ||||| ||||||||| ||| ||||||||||||||||||||||| Sbjct: 185 tagtccctaggacatgttgggccgcttatgattttacaaccaca 142
>gb|M19047.1|BLYTHNB Barley leaf specific thionin mRNA, complete cds, clone pKG1348 Length = 608 Score = 468 bits (236), Expect = e-129 Identities = 349/384 (90%), Gaps = 2/384 (0%) Strand = Plus / Minus Query: 71 ctcttattggaacaagggaaaaag-acaaatacataagtaagatgatacattggcttcca 129 ||||||||||||| ||||||||| | |||||||||| |||||||||||||| ||||| | Sbjct: 597 ctcttattggaacgagggaaaaaacagaaatacataactaagatgatacatttgcttcga 538 Query: 130 tacagctgatggtatcaagattattcaagacaaaatgactatacgaccttggccatagaa 189 | | | |||||||||||||||| || || | |||||||| | |||||||||||||||||| Sbjct: 537 t-ctggtgatggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaa 479 Query: 190 atcatgcacaagaacgcatgattaggcttcaacagactgaatgactgcaccatcattaca 249 ||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 478 atcatgcccaagaaggcatgattaggcttcaacagactgaatgacttcaccatcattaca 419 Query: 250 gaaacgggcacatgcgttgctgcagagtcccatgtcgaatttcatcttttggccacggaa 309 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct: 418 gaaacgggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggccacggga 359 Query: 310 aacattgtccacgttgtcacagacagaattcctgcatccaatggtgcagtactgagtgac 369 ||||||||||| |||||||||||| ||| ||| ||||||||| |||||||||| ||| | Sbjct: 358 aacattgtccatgttgtcacagacggaagtccggcatccaattgtgcagtactcagtcgc 299 Query: 370 atctggttcaccggattcagggagaagattcagtttaggatagtcactaggacattttga 429 || |||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||| Sbjct: 298 atttggttcaccggattcagggagaagattcagcttaggatagtccctaggacatgttgg 239 Query: 430 accgcttatgattttacaaccaca 453 ||||||||||||||||||||||| Sbjct: 238 gccgcttatgattttacaaccaca 215
>gb|M19046.1|BLYTHNA Barley leaf specific thionin mRNA, complete cds, clone pKG2872 Length = 540 Score = 432 bits (218), Expect = e-118 Identities = 293/318 (92%) Strand = Plus / Minus Query: 136 tgatggtatcaagattattcaagacaaaatgactatacgaccttggccatagaaatcatg 195 |||||||||||||||| || || | |||||||| | |||||||||||||||||||||||| Sbjct: 532 tgatggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaaatcatg 473 Query: 196 cacaagaacgcatgattaggcttcaacagactgaatgactgcaccatcattacagaaacg 255 | |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 472 cccaagaaggcatgattaggcttcaacagactgaatgacttcaccatcattacagaaacg 413 Query: 256 ggcacatgcgttgctgcagagtcccatgtcgaatttcatcttttggccacggaaaacatt 315 ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct: 412 ggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggccacgggaaacatt 353 Query: 316 gtccacgttgtcacagacagaattcctgcatccaatggtgcagtactgagtgacatctgg 375 ||||| |||||||||||| ||| ||| ||||||||| |||||||||| ||| ||| ||| Sbjct: 352 gtccatgttgtcacagacggaagtccggcatccaattgtgcagtactcagtcgcatttgg 293 Query: 376 ttcaccggattcagggagaagattcagtttaggatagtcactaggacattttgaaccgct 435 ||||||||||||||||||||||||||| ||||||||||| ||||||||| ||| ||||| Sbjct: 292 ttcaccggattcagggagaagattcagcttaggatagtccctaggacatgttgggccgct 233 Query: 436 tatgattttacaaccaca 453 |||||||||||||||||| Sbjct: 232 tatgattttacaaccaca 215
>emb|AJ508712.1|HVU508712 Hordeum vulgare mRNA for putative thionin Length = 414 Score = 347 bits (175), Expect = 2e-92 Identities = 226/243 (93%) Strand = Plus / Minus Query: 211 ttaggcttcaacagactgaatgactgcaccatcattacagaaacgggcacatgcgttgct 270 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 414 ttaggcttcaacagactgaatgacatcaccatcattacagaaacgggcacatgcgttgct 355 Query: 271 gcagagtcccatgtcgaatttcatcttttggccacggaaaacattgtccacgttgtcaca 330 |||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||| Sbjct: 354 gcagagtcccatgtcgaatttcatctcttggccacgggaaacattgtccatgttgtcaca 295 Query: 331 gacagaattcctgcatccaatggtgcagtactgagtgacatctggttcaccggattcagg 390 ||| ||| ||||||||||||| |||||||||| ||| ||| |||||||||||||||||| Sbjct: 294 gacggaagtcctgcatccaattgtgcagtactcagtcgcatttggttcaccggattcagg 235 Query: 391 gagaagattcagtttaggatagtcactaggacattttgaaccgcttatgattttacaacc 450 |||||||||||| ||||||||||| ||||||||| ||| |||||||||||||||||||| Sbjct: 234 gagaagattcagcttaggatagtccctaggacatgttgggccgcttatgattttacaacc 175 Query: 451 aca 453 ||| Sbjct: 174 aca 172
>gb|L36883.1|BLYBTH7T Hordeum vulgare thionin (BTH7) gene, complete cds Length = 2259 Score = 256 bits (129), Expect = 6e-65 Identities = 165/177 (93%) Strand = Plus / Minus Query: 136 tgatggtatcaagattattcaagacaaaatgactatacgaccttggccatagaaatcatg 195 |||||||||||||||| || || | |||||||| | |||||||||||||||||||||||| Sbjct: 2230 tgatggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaaatcatg 2171 Query: 196 cacaagaacgcatgattaggcttcaacagactgaatgactgcaccatcattacagaaacg 255 | |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 2170 cccaagaaggcatgattaggcttcaacagactgaatgacttcaccatcattacagaaacg 2111 Query: 256 ggcacatgcgttgctgcagagtcccatgtcgaatttcatcttttggccacggaaaac 312 |||||||||||||||||||||||||||||| |||||||||| |||||||||| |||| Sbjct: 2110 ggcacatgcgttgctgcagagtcccatgtcaaatttcatctcttggccacgggaaac 2054 Score = 101 bits (51), Expect = 2e-18 Identities = 69/75 (92%) Strand = Plus / Minus Query: 379 accggattcagggagaagattcagtttaggatagtcactaggacattttgaaccgcttat 438 |||||||||||||||||||||||| ||||||||||| |||||||| ||| |||||||| Sbjct: 1797 accggattcagggagaagattcagcttaggatagtccctaggacaggttgggccgcttat 1738 Query: 439 gattttacaaccaca 453 ||||||||||||||| Sbjct: 1737 gattttacaaccaca 1723 Score = 75.8 bits (38), Expect = 1e-10 Identities = 62/70 (88%) Strand = Plus / Minus Query: 312 cattgtccacgttgtcacagacagaattcctgcatccaatggtgcagtactgagtgacat 371 ||||||||| ||||||||| || ||| ||||||||||||| |||||||||| ||| |||| Sbjct: 1963 cattgtccatgttgtcacaaacggaagtcctgcatccaattgtgcagtactcagtcacat 1904 Query: 372 ctggttcacc 381 ||||||||| Sbjct: 1903 ttggttcacc 1894
>dbj|AB072342.1| Avena sativa mRNA for thionin Asthi5, complete cds Length = 641 Score = 172 bits (87), Expect = 7e-40 Identities = 201/239 (84%) Strand = Plus / Minus Query: 174 gaccttggccatagaaatcatgcacaagaacgcatgattaggcttcaacagactgaatga 233 ||||| ||||| ||||||||||||||||| ||||||||| |||| | ||| |||||| Sbjct: 496 gacctcggccaaagaaatcatgcacaagagtgcatgattaagcttggaaagatggaatga 437 Query: 234 ctgcaccatcattacagaaacgggcacatgcgttgctgcagagtcccatgtcgaatttca 293 | ||||| | ||||||||||| ||||| | ||| |||||||| |||||||| ||||| Sbjct: 436 cggcacccttgttacagaaacgaacacattctttgttgcagagtagcatgtcgattttca 377 Query: 294 tcttttggccacggaaaacattgtccacgttgtcacagacagaattcctgcatccaatgg 353 ||| ||||||| | | ||||||||||| ||||||||| || ||| || ||||||| |||| Sbjct: 376 tctcttggccatgaataacattgtccatgttgtcacaaacggaagtcatgcatcctatgg 317 Query: 354 tgcagtactgagtgacatctggttcaccggattcagggagaagattcagtttaggatag 412 ||||||||| ||||||||| ||||||||||||||| | ||||||| |||||||| |||| Sbjct: 316 tgcagtactcagtgacatccggttcaccggattcaagtagaagatgcagtttagaatag 258
>dbj|AB072341.1| Avena sativa mRNA for thionin Asthi4, complete cds Length = 678 Score = 77.8 bits (39), Expect = 3e-11 Identities = 111/135 (82%) Strand = Plus / Minus Query: 172 acgaccttggccatagaaatcatgcacaagaacgcatgattaggcttcaacagactgaat 231 |||||| ||||||||||||| | |||| ||| |||||||||||| | ||||| || | Sbjct: 549 acgaccatggccatagaaataaggcacgagagtgcatgattaggccccgacagatggatt 490 Query: 232 gactgcaccatcattacagaaacgggcacatgcgttgctgcagagtcccatgtcgaattt 291 ||| ||||| | |||||||||||| ||||||||||| |||||| | |||||||| || Sbjct: 489 gacggcacccttgttacagaaacggacacatgcgttgttgcagacttgcatgtcgatgtt 430 Query: 292 catcttttggccacg 306 ||||| ||||||||| Sbjct: 429 catctcttggccacg 415
>gb|AC019028.13| Mus musculus chromosome 5, clone RP23-88A22, complete sequence Length = 264425 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 82 acaagggaaaaagacaaataca 103 |||||||||||||||||||||| Sbjct: 6908 acaagggaaaaagacaaataca 6887
>gb|AC138101.8| Mus musculus chromosome 5, clone RP23-149H20, complete sequence Length = 211521 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 82 acaagggaaaaagacaaataca 103 |||||||||||||||||||||| Sbjct: 86367 acaagggaaaaagacaaataca 86346
>gb|AC125610.4| Homo sapiens 3 BAC RP11-189B7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 159706 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 84 aagggaaaaagacaaatacata 105 |||||||||||||||||||||| Sbjct: 85293 aagggaaaaagacaaatacata 85272
>gb|AC013622.12| Mus musculus chromosome 5, clone RP23-232H18, complete sequence Length = 240821 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 82 acaagggaaaaagacaaataca 103 |||||||||||||||||||||| Sbjct: 41781 acaagggaaaaagacaaataca 41802
>gb|AC125194.4| Mus musculus BAC clone RP23-275K6 from chromosome 18, complete sequence Length = 155706 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 82 acaagggaaaaagacaaatacataa 106 |||||||||||||| |||||||||| Sbjct: 114727 acaagggaaaaagaaaaatacataa 114751
>emb|AL356115.9| Human DNA sequence from clone RP11-486O22 on chromosome 10 Contains the 3' end of a novel gene (KIAA1128, FLJ14262, FLJ25809) , the 5' end of a Siah-interacting protein (SIP) (calcyclin binding protein) pseudogene, ribosomal protein S3A pseudogene 5 (RPS3AP5) and two CpG islands, complete sequence Length = 150151 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 4 gtatcacataatatatccatg 24 ||||||||||||||||||||| Sbjct: 8649 gtatcacataatatatccatg 8629
>gb|AC074321.10| Homo sapiens chromosome 10 clone RP11-122F14, complete sequence Length = 177203 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 4 gtatcacataatatatccatg 24 ||||||||||||||||||||| Sbjct: 41668 gtatcacataatatatccatg 41688
>gb|AC150277.2| Mus musculus BAC clone RP23-97E12 from 18, complete sequence Length = 179399 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 82 acaagggaaaaagacaaatacataa 106 |||||||||||||| |||||||||| Sbjct: 54540 acaagggaaaaagaaaaatacataa 54564
>gb|AC122496.2| Mus musculus BAC clone RP24-400K16 from 5, complete sequence Length = 180081 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 tcacataatatatccatgga 26 |||||||||||||||||||| Sbjct: 155539 tcacataatatatccatgga 155558
>emb|Z11873.1|SSGTFJKG S.salivarius gtfJ and gtfK genes for glucosyltransferase I and glucosyltransferase S Length = 10125 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 tacagctgatggtatcaaga 149 |||||||||||||||||||| Sbjct: 2450 tacagctgatggtatcaaga 2469
>gb|AC116341.2| Homo sapiens chromosome 5 clone RP11-144A5, complete sequence Length = 31443 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 ggaaaaagacaaatacataa 106 |||||||||||||||||||| Sbjct: 11773 ggaaaaagacaaatacataa 11792
>emb|BX322615.6| Zebrafish DNA sequence from clone DKEY-81L20 in linkage group 17, complete sequence Length = 120315 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 aacagactgaatgactgcac 239 |||||||||||||||||||| Sbjct: 61583 aacagactgaatgactgcac 61602
>gb|AC112183.3| Homo sapiens chromosome 5 clone RP11-152F4, complete sequence Length = 163612 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 ggaaaaagacaaatacataa 106 |||||||||||||||||||| Sbjct: 160156 ggaaaaagacaaatacataa 160175
>gb|AC012467.9| Homo sapiens chr3 BAC RP11-884K10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 177072 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 452 cagcacctgcacagactgga 471 |||||||||||||||||||| Sbjct: 77862 cagcacctgcacagactgga 77881
>tpg|BK000650.1| TPA: TPA_exp: Mus musculus otopetrin 1 isoform a and isoform b (Otop1) gene, complete cds; alternatively spliced Length = 28272 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 ttgtccacgttgtcacagac 333 |||||||||||||||||||| Sbjct: 14605 ttgtccacgttgtcacagac 14624
>gb|AC084071.20| Mus musculus strain C57BL/6J chromosome 5 clone rp23-426e16, complete sequence Length = 194175 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 ttgtccacgttgtcacagac 333 |||||||||||||||||||| Sbjct: 78067 ttgtccacgttgtcacagac 78086
>gb|AC124126.14| Mus musculus chromosome 18, clone RP23-377C8, complete sequence Length = 192355 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 acaaatacataagtaagatg 114 |||||||||||||||||||| Sbjct: 111212 acaaatacataagtaagatg 111193
>gb|L25932.1|HUMLBR01 Homo sapiens integral nuclear envelope inner membrane protein (LBR) gene, 5' UTR, exons 1 and 2 Length = 5132 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 ggaaaaagacaaatacataa 106 |||||||||||||||||||| Sbjct: 4760 ggaaaaagacaaatacataa 4779
>gb|M64111.1|STRGTFJA Streptococcus salivarius glucosyltransferase I (gtfJ) gene, complete cds, and gtfK gene, 5' end Length = 4941 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 tacagctgatggtatcaaga 149 |||||||||||||||||||| Sbjct: 2450 tacagctgatggtatcaaga 2469 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,345,750 Number of Sequences: 3902068 Number of extensions: 4345750 Number of successful extensions: 82852 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 82791 Number of HSP's gapped (non-prelim): 50 length of query: 483 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 461 effective length of database: 17,147,199,772 effective search space: 7904859094892 effective search space used: 7904859094892 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)