Clone Information

BLAST Search Result

Clone Name	rbaet12f01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|NM_193176.1\| Oryza sativa (japonica cultivar-group), predic...	123	4e-25
2	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	123	4e-25
3	dbj\|AP003350.3\| Oryza sativa (japonica cultivar-group) genomic D...	123	4e-25
4	dbj\|AK101002.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	123	4e-25
5	gb\|AY107833.1\| Zea mays PCO063938 mRNA sequence	103	3e-19
6	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	66	7e-08
7	dbj\|AP004740.3\| Oryza sativa (japonica cultivar-group) genomic D...	66	7e-08
8	ref\|XM_467628.1\| Oryza sativa (japonica cultivar-group), mRNA	64	3e-07
9	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	64	3e-07
10	dbj\|AP005319.3\| Oryza sativa (japonica cultivar-group) genomic D...	64	3e-07
11	dbj\|AP004888.3\| Oryza sativa (japonica cultivar-group) genomic D...	64	3e-07
12	emb\|AL606631.2\|OSJN00069 Oryza sativa genomic DNA, chromosome 4,...	56	7e-05
13	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	56	7e-05
14	dbj\|AP004993.3\| Oryza sativa (japonica cultivar-group) genomic D...	56	7e-05
15	dbj\|AP004630.3\| Oryza sativa (japonica cultivar-group) genomic D...	56	7e-05
16	dbj\|AK119922.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	56	7e-05
17	dbj\|AK068185.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	56	7e-05
18	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	54	3e-04
19	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	54	3e-04
20	gb\|AC140006.1\| Oryza sativa (japonica cultivar-group) chromosome...	54	3e-04
21	gb\|AC104474.2\| Oryza sativa (japonica cultivar-group) chromosome...	54	3e-04
22	dbj\|AK106150.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	54	3e-04
23	dbj\|AK104714.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	54	3e-04
24	dbj\|AK066587.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	54	3e-04
25	emb\|AL353603.8\| Human DNA sequence from clone RP11-25E5 on chrom...	44	0.27
26	gb\|AC124909.3\| Equus caballus clone CH241-91H15, complete sequence	44	0.27
27	gb\|DP000020.1\| Equus caballus target 1 genomic scaffold	44	0.27
28	emb\|AL391809.21\| Human DNA sequence from clone RP11-47A4 on chro...	42	1.1
29	ref\|XM_792072.1\| PREDICTED: Strongylocentrotus purpuratus simila...	42	1.1
30	emb\|AL939121.1\|SCO939121 Streptomyces coelicolor A3(2) complete ...	42	1.1
31	gb\|CP000016.1\| Candidatus Blochmannia pennsylvanicus str. BPEN, ...	42	1.1
32	gb\|AC104396.7\| Mus musculus BAC clone RP23-413J8 from chromosome...	40	4.2
33	emb\|AL390965.15\| Human DNA sequence from clone RP11-640E11 on ch...	40	4.2
34	gb\|AC120035.6\| Homo sapiens chromosome 8, clone RP11-1116K10, co...	40	4.2
35	emb\|BX248505.8\| Zebrafish DNA sequence from clone CH211-87L2 in ...	40	4.2
36	emb\|BX572636.6\| Zebrafish DNA sequence from clone CH211-192C1 in...	40	4.2
37	gb\|AC126565.6\| Homo sapiens 12 BAC RP11-717F19 (Roswell Park Can...	40	4.2
38	gb\|AF411808.1\| Lycopersicon esculentum BAC clone Clemson_Id 62O1...	40	4.2
39	gb\|AC078805.13\| Homo sapiens 3 BAC RP11-402E20 (Roswell Park Can...	40	4.2
40	emb\|BX255919.15\| Zebrafish DNA sequence from clone DKEY-259P11 i...	40	4.2
41	gb\|AC068294.26\|AC068294 Mus musculus 3 BAC RP23-418O21 (Roswell ...	40	4.2
42	gb\|AC087773.1\|AC087773 Genomic Sequence For Lycopersicon esculen...	40	4.2
43	gb\|AC129915.6\| Homo sapiens chromosome 8, clone CTD-3212A4, comp...	40	4.2
44	dbj\|BA000026.2\| Mycoplasma penetrans HF-2 DNA, complete genome	40	4.2
45	emb\|AL953846.6\| Zebrafish DNA sequence from clone CH211-244D10, ...	40	4.2
46	gb\|AC115078.11\| Mus musculus chromosome 3, clone RP24-457B22, co...	40	4.2
47	dbj\|AB023041.1\| Arabidopsis thaliana genomic DNA, chromosome 3, ...	40	4.2
48	emb\|BX950224.7\| Zebrafish DNA sequence from clone DKEY-284G18 in...	40	4.2
49	emb\|CR931784.7\| Zebrafish DNA sequence from clone DKEY-237H12 in...	40	4.2
50	emb\|CR936257.1\| Natronomonas pharaonis DSM 2160 complete genome	40	4.2
51	gb\|AC147562.5\| Mus musculus BAC clone RP23-239A13 from 3, comple...	40	4.2
52	gb\|AC133516.3\| Mus musculus BAC clone RP23-260G15 from chromosom...	40	4.2

>ref|NM_193176.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1437

 Score =  123 bits (62), Expect = 4e-25
 Identities = 107/122 (87%)
 Strand = Plus / Minus

                                                                        
Query: 195  cgatttcgggcagctgcaccgggtagcgggcgatgcagtcggcccacggcccgtcggcgt 254
            |||||||||| ||||| || |||||||||  |||||||||| |||| |||||||||||||
Sbjct: 1432 cgatttcggggagctggacggggtagcggtggatgcagtcgacccagggcccgtcggcgt 1373

                                                                        
Query: 255  cgccggctggcttgatgcactcccacgcgacgctgttgcagtcaaatccggcgccgaagg 314
            ||   || ||||||| |||||||||||| |||||||||||||| || |||||||||||||
Sbjct: 1372 cgggcgccggcttgacgcactcccacgccacgctgttgcagtcgaagccggcgccgaagg 1313

              
Query: 315  ag 316
            ||
Sbjct: 1312 ag 1311

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  123 bits (62), Expect = 4e-25
 Identities = 107/122 (87%)
 Strand = Plus / Minus

                                                                            
Query: 195      cgatttcgggcagctgcaccgggtagcgggcgatgcagtcggcccacggcccgtcggcgt 254
                |||||||||| ||||| || |||||||||  |||||||||| |||| |||||||||||||
Sbjct: 19056852 cgatttcggggagctggacggggtagcggtggatgcagtcgacccagggcccgtcggcgt 19056793

                                                                            
Query: 255      cgccggctggcttgatgcactcccacgcgacgctgttgcagtcaaatccggcgccgaagg 314
                ||   || ||||||| |||||||||||| |||||||||||||| || |||||||||||||
Sbjct: 19056792 cgggcgccggcttgacgcactcccacgccacgctgttgcagtcgaagccggcgccgaagg 19056733

                  
Query: 315      ag 316
                ||
Sbjct: 19056732 ag 19056731

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>dbj|AP003350.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0702H08
          Length = 166899

 Score =  123 bits (62), Expect = 4e-25
 Identities = 107/122 (87%)
 Strand = Plus / Minus

                                                                         
Query: 195   cgatttcgggcagctgcaccgggtagcgggcgatgcagtcggcccacggcccgtcggcgt 254
             |||||||||| ||||| || |||||||||  |||||||||| |||| |||||||||||||
Sbjct: 22269 cgatttcggggagctggacggggtagcggtggatgcagtcgacccagggcccgtcggcgt 22210

                                                                         
Query: 255   cgccggctggcttgatgcactcccacgcgacgctgttgcagtcaaatccggcgccgaagg 314
             ||   || ||||||| |||||||||||| |||||||||||||| || |||||||||||||
Sbjct: 22209 cgggcgccggcttgacgcactcccacgccacgctgttgcagtcgaagccggcgccgaagg 22150

               
Query: 315   ag 316
             ||
Sbjct: 22149 ag 22148

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>dbj|AK101002.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023147G07, full
            insert sequence
          Length = 1933

 Score =  123 bits (62), Expect = 4e-25
 Identities = 107/122 (87%)
 Strand = Plus / Minus

                                                                        
Query: 195  cgatttcgggcagctgcaccgggtagcgggcgatgcagtcggcccacggcccgtcggcgt 254
            |||||||||| ||||| || |||||||||  |||||||||| |||| |||||||||||||
Sbjct: 1508 cgatttcggggagctggacggggtagcggtggatgcagtcgacccagggcccgtcggcgt 1449

                                                                        
Query: 255  cgccggctggcttgatgcactcccacgcgacgctgttgcagtcaaatccggcgccgaagg 314
            ||   || ||||||| |||||||||||| |||||||||||||| || |||||||||||||
Sbjct: 1448 cgggcgccggcttgacgcactcccacgccacgctgttgcagtcgaagccggcgccgaagg 1389

              
Query: 315  ag 316
            ||
Sbjct: 1388 ag 1387

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>gb|AY107833.1| Zea mays PCO063938 mRNA sequence
          Length = 1113

 Score =  103 bits (52), Expect = 3e-19
 Identities = 114/132 (86%), Gaps = 2/132 (1%)
 Strand = Plus / Minus

                                                                       
Query: 186 tgtccttgtcgatttcgggcagctgcaccgggtagcgggcgatgcagtcggcccacggcc 245
           |||||||| ||| |||||| || ||||||||||||||| |||||||||||||||| ||||
Sbjct: 795 tgtccttggcgacttcggggagatgcaccgggtagcggtcgatgcagtcggcccagggcc 736

                                                                       
Query: 246 cgtcggcgtcg-ccggctggcttgatgcactcccacgcgacgctgttgcagtcaaatccg 304
           || |||||||| ||||| ||||||| ||||||| | || || | | |||| || ||||||
Sbjct: 735 cgccggcgtcggccggc-ggcttgacgcactccaatgccacacagctgcactcgaatccg 677

                       
Query: 305 gcgccgaaggag 316
           ||||||||||||
Sbjct: 676 gcgccgaaggag 665

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 60/69 (86%)
 Strand = Plus / Plus

                                                                           
Query: 226     gatgcagtcggcccacggcccgtcggcgtcgccggctggcttgatgcactcccacgcgac 285
               ||||| ||||||||| ||||||||||||| ||  || |||  |||||||||||||||| |
Sbjct: 8419629 gatgctgtcggcccatggcccgtcggcgttgcgcgccggcgagatgcactcccacgcggc 8419688

                        
Query: 286     gctgttgca 294
               |||||||||
Sbjct: 8419689 gctgttgca 8419697



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                          
Query: 236     gcccacggcccgtcggcgtcgccggctggcttgatgcactcccacgcgacgctgttgca 294
               ||||||||||||||||||||||  || |||  |||||||||||||||  ||||||||||
Sbjct: 8523554 gcccacggcccgtcggcgtcgcgcgccggcgagatgcactcccacgccgcgctgttgca 8523496



 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 52/60 (86%)
 Strand = Plus / Plus

                                                                           
Query: 235     ggcccacggcccgtcggcgtcgccggctggcttgatgcactcccacgcgacgctgttgca 294
               |||||||||||||||| ||||||  || |||  |||||||||||||||  ||||||||||
Sbjct: 8609213 ggcccacggcccgtcgtcgtcgcgcgccggcgagatgcactcccacgccgcgctgttgca 8609272



 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 236     gcccacggcccgtcggcgtcgc 257
               ||||||||||||||||||||||
Sbjct: 8656163 gcccacggcccgtcggcgtcgc 8656184

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>dbj|AP004740.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0092H22
          Length = 165194

 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 60/69 (86%)
 Strand = Plus / Plus

                                                                         
Query: 226   gatgcagtcggcccacggcccgtcggcgtcgccggctggcttgatgcactcccacgcgac 285
             ||||| ||||||||| ||||||||||||| ||  || |||  |||||||||||||||| |
Sbjct: 34330 gatgctgtcggcccatggcccgtcggcgttgcgcgccggcgagatgcactcccacgcggc 34389

                      
Query: 286   gctgttgca 294
             |||||||||
Sbjct: 34390 gctgttgca 34398



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                         
Query: 236    gcccacggcccgtcggcgtcgccggctggcttgatgcactcccacgcgacgctgttgca 294
              ||||||||||||||||||||||  || |||  |||||||||||||||  ||||||||||
Sbjct: 138255 gcccacggcccgtcggcgtcgcgcgccggcgagatgcactcccacgccgcgctgttgca 138197

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>ref|XM_467628.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1458

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                        
Query: 215  gggtagcgggcgatgcagtcggcccacggcccgtcggcgtcgccggctggcttgatgcac 274
            |||||||||  |||||||  |||||| ||||||||||||| | |||| ||   |||||||
Sbjct: 1427 gggtagcggtggatgcaggtggcccatggcccgtcggcgttggcggcggggcggatgcac 1368

                                
Query: 275  tcccacgcgacgctgttgca 294
            ||||||||| ||||||||||
Sbjct: 1367 tcccacgcggcgctgttgca 1348

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                            
Query: 215      gggtagcgggcgatgcagtcggcccacggcccgtcggcgtcgccggctggcttgatgcac 274
                |||||||||  |||||||  |||||| ||||||||||||| | |||| ||   |||||||
Sbjct: 30520259 gggtagcggtggatgcaggtggcccatggcccgtcggcgttggcggcggggcggatgcac 30520200

                                    
Query: 275      tcccacgcgacgctgttgca 294
                ||||||||| ||||||||||
Sbjct: 30520199 tcccacgcggcgctgttgca 30520180

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>dbj|AP005319.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0643A10
          Length = 187931

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                         
Query: 215   gggtagcgggcgatgcagtcggcccacggcccgtcggcgtcgccggctggcttgatgcac 274
             |||||||||  |||||||  |||||| ||||||||||||| | |||| ||   |||||||
Sbjct: 32267 gggtagcggtggatgcaggtggcccatggcccgtcggcgttggcggcggggcggatgcac 32208

                                 
Query: 275   tcccacgcgacgctgttgca 294
             ||||||||| ||||||||||
Sbjct: 32207 tcccacgcggcgctgttgca 32188

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>dbj|AP004888.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0617A09
          Length = 134804

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                          
Query: 215    gggtagcgggcgatgcagtcggcccacggcccgtcggcgtcgccggctggcttgatgcac 274
              |||||||||  |||||||  |||||| ||||||||||||| | |||| ||   |||||||
Sbjct: 126307 gggtagcggtggatgcaggtggcccatggcccgtcggcgttggcggcggggcggatgcac 126248

                                  
Query: 275    tcccacgcgacgctgttgca 294
              ||||||||| ||||||||||
Sbjct: 126247 tcccacgcggcgctgttgca 126228

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>emb|AL606631.2|OSJN00069 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0050O03,
             complete sequence
          Length = 140948

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                 
Query: 262   tggcttgatgcactcccacgcgacgctgttgcagtc 297
             ||||||||||||||||||| |||||||| |||||||
Sbjct: 65551 tggcttgatgcactcccacacgacgctgctgcagtc 65516

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4,
              complete sequence
          Length = 35498469

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                  
Query: 262    tggcttgatgcactcccacgcgacgctgttgcagtc 297
              ||||||||||||||||||| |||||||| |||||||
Sbjct: 985832 tggcttgatgcactcccacacgacgctgctgcagtc 985797

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>dbj|AP004993.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0037N01
          Length = 174085

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 52/60 (86%)
 Strand = Plus / Plus

                                                                         
Query: 235   ggcccacggcccgtcggcgtcgccggctggcttgatgcactcccacgcgacgctgttgca 294
             |||||||||||||||| ||||||  || |||  |||||||||||||||  ||||||||||
Sbjct: 24195 ggcccacggcccgtcgtcgtcgcgcgccggcgagatgcactcccacgccgcgctgttgca 24254



 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 236   gcccacggcccgtcggcgtcgc 257
             ||||||||||||||||||||||
Sbjct: 71145 gcccacggcccgtcggcgtcgc 71166

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>dbj|AP004630.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0031A09
          Length = 162511

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 52/60 (86%)
 Strand = Plus / Plus

                                                                         
Query: 235   ggcccacggcccgtcggcgtcgccggctggcttgatgcactcccacgcgacgctgttgca 294
             |||||||||||||||| ||||||  || |||  |||||||||||||||  ||||||||||
Sbjct: 84032 ggcccacggcccgtcgtcgtcgcgcgccggcgagatgcactcccacgccgcgctgttgca 84091



 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 236    gcccacggcccgtcggcgtcgc 257
              ||||||||||||||||||||||
Sbjct: 130982 gcccacggcccgtcggcgtcgc 131003

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>dbj|AK119922.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-183-G08, full
            insert sequence
          Length = 1580

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 262  tggcttgatgcactcccacgcgacgctgttgcagtc 297
            ||||||||||||||||||| |||||||| |||||||
Sbjct: 1431 tggcttgatgcactcccacacgacgctgctgcagtc 1396

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>dbj|AK068185.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013135C17, full
            insert sequence
          Length = 1669

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                        
Query: 235  ggcccacggcccgtcggcgtcgccggctggcttgatgcactcccacgcgacgctgttgca 294
            |||||||||||||||| ||||||  || |||  |||||||||||||||  ||||||||||
Sbjct: 1518 ggcccacggcccgtcgtcgtcgcgcgccggcgagatgcactcccacgccgcgctgttgca 1459

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                      
Query: 215     gggtagcgggcgatgcagtcggcccacggcccgtcggcg 253
               |||||||||  |||||||||| |||||||||||||||||
Sbjct: 6271409 gggtagcggtggatgcagtcgtcccacggcccgtcggcg 6271447

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                      
Query: 215     gggtagcgggcgatgcagtcggcccacggcccgtcggcg 253
               |||||||||  |||||||||| |||||||||||||||||
Sbjct: 6270622 gggtagcggtggatgcagtcgtcccacggcccgtcggcg 6270660

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>gb|AC140006.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNAa0090D11,
              complete sequence
          Length = 115403

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                     
Query: 215    gggtagcgggcgatgcagtcggcccacggcccgtcggcg 253
              |||||||||  |||||||||| |||||||||||||||||
Sbjct: 110020 gggtagcggtggatgcagtcgtcccacggcccgtcggcg 110058

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>gb|AC104474.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0024O21, complete sequence
          Length = 155651

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                    
Query: 215   gggtagcgggcgatgcagtcggcccacggcccgtcggcg 253
             |||||||||  |||||||||| |||||||||||||||||
Sbjct: 84617 gggtagcggtggatgcagtcgtcccacggcccgtcggcg 84655

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>dbj|AK106150.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-H08, full
            insert sequence
          Length = 1892

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                   
Query: 215  gggtagcgggcgatgcagtcggcccacggcccgtcggcg 253
            |||||||||  |||||||||| |||||||||||||||||
Sbjct: 1629 gggtagcggtggatgcagtcgtcccacggcccgtcggcg 1591

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>dbj|AK104714.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-H10, full
            insert sequence
          Length = 1892

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                   
Query: 215  gggtagcgggcgatgcagtcggcccacggcccgtcggcg 253
            |||||||||  |||||||||| |||||||||||||||||
Sbjct: 1629 gggtagcggtggatgcagtcgtcccacggcccgtcggcg 1591

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>dbj|AK066587.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074H08, full
            insert sequence
          Length = 1966

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                   
Query: 215  gggtagcgggcgatgcagtcggcccacggcccgtcggcg 253
            |||||||||  |||||||||| |||||||||||||||||
Sbjct: 1630 gggtagcggtggatgcagtcgtcccacggcccgtcggcg 1592

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>emb|AL353603.8| Human DNA sequence from clone RP11-25E5 on chromosome 10, complete
             sequence
          Length = 30525

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 119   atcaaatcaacatcattggcct 140
             ||||||||||||||||||||||
Sbjct: 15570 atcaaatcaacatcattggcct 15549

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>gb|AC124909.3| Equus caballus clone CH241-91H15, complete sequence
          Length = 171421

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 33     aataacagatattttagtttct 54
              ||||||||||||||||||||||
Sbjct: 137956 aataacagatattttagtttct 137935

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>gb|DP000020.1| Equus caballus target 1 genomic scaffold
          Length = 1907055

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 33      aataacagatattttagtttct 54
               ||||||||||||||||||||||
Sbjct: 1151424 aataacagatattttagtttct 1151403

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>emb|AL391809.21| Human DNA sequence from clone RP11-47A4 on chromosome 1 Contains the 5'
             end of the RYR2 gene for ryanodine receptor 2 (cardiac)
             and three CpG islands, complete sequence
          Length = 167548

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 36    aacagatattttagtttctct 56
             |||||||||||||||||||||
Sbjct: 45020 aacagatattttagtttctct 45040

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>ref|XM_792072.1| PREDICTED: Strongylocentrotus purpuratus similar to Leukotriene A-4
           hydrolase (LTA-4 hydrolase) (Leukotriene A(4) hydrolase)
           (LOC592555), mRNA
          Length = 1854

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 165 tggttggttaaacccttcaca 185
           |||||||||||||||||||||
Sbjct: 360 tggttggttaaacccttcaca 380

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>emb|AL939121.1|SCO939121 Streptomyces coelicolor A3(2) complete genome; segment 18/29
          Length = 292100

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 241   cggcccgtcggcgtcgccggc 261
             |||||||||||||||||||||
Sbjct: 22189 cggcccgtcggcgtcgccggc 22169

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>gb|CP000016.1| Candidatus Blochmannia pennsylvanicus str. BPEN, complete genome
          Length = 791654

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 7      acatattttttatacatattc 27
              |||||||||||||||||||||
Sbjct: 719645 acatattttttatacatattc 719665

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>gb|AC104396.7| Mus musculus BAC clone RP23-413J8 from chromosome 3, complete sequence
          Length = 195860

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 4     taaacatattttttatacat 23
             ||||||||||||||||||||
Sbjct: 52725 taaacatattttttatacat 52744

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>emb|AL390965.15| Human DNA sequence from clone RP11-640E11 on chromosome 13 Contains a
             solute carrier family 25 (mitochondrial carrier; adenine
             nucleotide translocator), member 5 (SLC25A5) pseudogene,
             complete sequence
          Length = 92179

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 99    ttcaataatggatacaatac 118
             ||||||||||||||||||||
Sbjct: 11150 ttcaataatggatacaatac 11169

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>gb|AC120035.6| Homo sapiens chromosome 8, clone RP11-1116K10, complete sequence
          Length = 151045

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 58   taatggaaagatcatacaga 77
            ||||||||||||||||||||
Sbjct: 5936 taatggaaagatcatacaga 5955

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>emb|BX248505.8| Zebrafish DNA sequence from clone CH211-87L2 in linkage group 14,
              complete sequence
          Length = 189425

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 42     tattttagtttctctttaat 61
              ||||||||||||||||||||
Sbjct: 175107 tattttagtttctctttaat 175088

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>emb|BX572636.6| Zebrafish DNA sequence from clone CH211-192C1 in linkage group 8,
              complete sequence
          Length = 169758

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 3      ataaacatattttttatacatattcgcaaaaa 34
              |||||| ||||||||||||| ||| |||||||
Sbjct: 128920 ataaacttattttttatacaaattagcaaaaa 128951

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>gb|AC126565.6| Homo sapiens 12 BAC RP11-717F19 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 47620

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 3     ataaacatattttttatacatatt 26
             |||||||||| |||||||||||||
Sbjct: 32797 ataaacatatattttatacatatt 32820

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>gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence
          Length = 70347

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     acatattttttatacatatt 26
             ||||||||||||||||||||
Sbjct: 35266 acatattttttatacatatt 35247

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>gb|AC078805.13| Homo sapiens 3 BAC RP11-402E20 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 110992

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 136   ggcctgaactaagtaaggtg 155
             ||||||||||||||||||||
Sbjct: 70891 ggcctgaactaagtaaggtg 70910

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>emb|BX255919.15| Zebrafish DNA sequence from clone DKEY-259P11 in linkage group 8,
              complete sequence
          Length = 168607

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 42     tattttagtttctctttaat 61
              ||||||||||||||||||||
Sbjct: 142006 tattttagtttctctttaat 141987

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>gb|AC068294.26|AC068294 Mus musculus 3 BAC RP23-418O21 (Roswell Park Cancer Institute Mouse BAC
             Library) complete sequence
          Length = 201750

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 49    gtttctctttaatggaaaga 68
             ||||||||||||||||||||
Sbjct: 45339 gtttctctttaatggaaaga 45358

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>gb|AC087773.1|AC087773 Genomic Sequence For Lycopersicon esculentum Clone T62O11, complete
             sequence
          Length = 70497

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     acatattttttatacatatt 26
             ||||||||||||||||||||
Sbjct: 35266 acatattttttatacatatt 35247

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>gb|AC129915.6| Homo sapiens chromosome 8, clone CTD-3212A4, complete sequence
          Length = 162359

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 58     taatggaaagatcatacaga 77
              ||||||||||||||||||||
Sbjct: 107750 taatggaaagatcatacaga 107769

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>dbj|BA000026.2| Mycoplasma penetrans HF-2 DNA, complete genome
          Length = 1358633

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 29     caaaaataacagatatttta 48
              ||||||||||||||||||||
Sbjct: 465582 caaaaataacagatatttta 465601

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>emb|AL953846.6| Zebrafish DNA sequence from clone CH211-244D10, complete sequence
          Length = 153939

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     aaacatattttttatacata 24
             ||||||||||||||||||||
Sbjct: 57784 aaacatattttttatacata 57803

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>gb|AC115078.11| Mus musculus chromosome 3, clone RP24-457B22, complete sequence
          Length = 179789

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 49   gtttctctttaatggaaaga 68
            ||||||||||||||||||||
Sbjct: 4282 gtttctctttaatggaaaga 4263

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>dbj|AB023041.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MPE11
          Length = 83650

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 44   ttttagtttctctttaatgg 63
            ||||||||||||||||||||
Sbjct: 7831 ttttagtttctctttaatgg 7850

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>emb|BX950224.7| Zebrafish DNA sequence from clone DKEY-284G18 in linkage group 18,
             complete sequence
          Length = 155246

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 116   tacatcaaatcaacatcattggcc 139
             ||||||||||| ||||||||||||
Sbjct: 46400 tacatcaaatccacatcattggcc 46377

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>emb|CR931784.7| Zebrafish DNA sequence from clone DKEY-237H12 in linkage group 14,
              complete sequence
          Length = 223042

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 50     tttctctttaatggaaagat 69
              ||||||||||||||||||||
Sbjct: 110842 tttctctttaatggaaagat 110823

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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 246    cgtcggcgtcgccggctggc 265
              ||||||||||||||||||||
Sbjct: 800865 cgtcggcgtcgccggctggc 800884

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>gb|AC147562.5| Mus musculus BAC clone RP23-239A13 from 3, complete sequence
          Length = 167633

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 4      taaacatattttttatacat 23
              ||||||||||||||||||||
Sbjct: 108731 taaacatattttttatacat 108750

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>gb|AC133516.3| Mus musculus BAC clone RP23-260G15 from chromosome 10, complete
             sequence
          Length = 203750

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 111   tacaatacatcaaatcaaca 130
             ||||||||||||||||||||
Sbjct: 97018 tacaatacatcaaatcaaca 96999



 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 111   tacaatacatcaaatcaaca 130
             ||||||||||||||||||||
Sbjct: 96534 tacaatacatcaaatcaaca 96553


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,178,451
Number of Sequences: 3902068
Number of extensions: 3178451
Number of successful extensions: 72632
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72261
Number of HSP's gapped (non-prelim): 371
length of query: 316
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 294
effective length of database: 17,147,199,772
effective search space: 5041276732968
effective search space used: 5041276732968
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result