ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet12d12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF139814.1|AF139814 Triticum aestivum plasma membrane intrinsic protein 1 (PIP1) mRNA, complete cds Length = 1283 Score = 513 bits (259), Expect = e-142 Identities = 395/434 (91%), Gaps = 16/434 (3%) Strand = Plus / Minus Query: 18 cttgcttggcggattgatgatttggatagaa-ggtggcgacgttgggtcgatcatacata 76 ||||||||| |||||||||| || ||||||| |||||||||||||| ||||||||||||| Sbjct: 1273 cttgcttggtggattgatgacttagatagaaaggtggcgacgttggatcgatcatacata 1214 Query: 77 tggtcgctaaattaaaaca------ggaaaaggaatgcgggctaattaagacaagcgatc 130 ||||||||||||| ||| | ||||||| ||||||||||||||||||||||||||| Sbjct: 1213 tggtcgctaaatttaaatacaagtaggaaaagcaatgcgggctaattaagacaagcgatc 1154 Query: 131 ccatggaccgaattacaacacacggcacgcatgactgggc-acatac---gcatatgcag 186 |||||||||||||||||| |||||||||||||||| || | || ||| |||||||||| Sbjct: 1153 ccatggaccgaattacaagacacggcacgcatgaccggaccacgtactacgcatatgcag 1094 Query: 187 ctgccgacacataaataacacgaccattgcagcggcc-aactgaactgtcgagaagttgc 245 |||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||| Sbjct: 1093 ctgccgacacataa-taacacgaccattgcggcggccgaactgaactgtcgagaagttgc 1035 Query: 246 aaaagcggctttctctttggatggatggacacagcacaggtcgccattgcttcaatcttg 305 ||||||| ||||||| |||||||||||||||| ||| |||||||||||||||| ||||| Sbjct: 1034 aaaagcgcatttctctctggatggatggacacaacacgggtcgccattgcttcagtcttg 975 Query: 306 catgcacatcacatggat---aactcgttacgcgttgctcctgaaggagccgagggcctt 362 ||| || || |||||||| |||| |||||||||||||||||||||||||||||||||| Sbjct: 974 catacagatgacatggatgataacttgttacgcgttgctcctgaaggagccgagggcctt 915 Query: 363 gatggcgccggccctgagtatgtactggtggtagaaggccgcgatcgccgcgccgatcat 422 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 914 gatggcgccggccctgaggatgtactggtggtagaaggccgcgatcgccgcgccgatcat 855 Query: 423 ggggccgacccaga 436 |||||||||||||| Sbjct: 854 ggggccgacccaga 841
>gb|AF062393.1|AF062393 Oryza sativa aquaporin (PIP2a) mRNA, complete cds Length = 1328 Score = 137 bits (69), Expect = 3e-29 Identities = 96/105 (91%) Strand = Plus / Minus Query: 332 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 391 ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| Sbjct: 968 acgcgttgctcctgaaggagccgagggccttgatggcgccggcccggaggatgtactggt 909 Query: 392 ggtagaaggccgcgatcgccgcgccgatcatggggccgacccaga 436 ||||||| |||||||| || ||||||| | ||||||||||||| Sbjct: 908 ggtagaacgccgcgatggcggcgccgacgaacgggccgacccaga 864
>ref|NM_187092.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1242 Score = 129 bits (65), Expect = 8e-27 Identities = 95/105 (90%) Strand = Plus / Minus Query: 332 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 391 |||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| Sbjct: 978 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactggt 919 Query: 392 ggtagaaggccgcgatcgccgcgccgatcatggggccgacccaga 436 ||||||| |||||||| || ||||||| | ||||||||||||| Sbjct: 918 ggtagaacgccgcgatggcggcgccgacgaacgggccgacccaga 874
>ref|XM_507363.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1047_A06.117 mRNA Length = 1257 Score = 129 bits (65), Expect = 8e-27 Identities = 95/105 (90%) Strand = Plus / Minus Query: 332 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 391 |||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| Sbjct: 980 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactggt 921 Query: 392 ggtagaaggccgcgatcgccgcgccgatcatggggccgacccaga 436 ||||||| |||||||| || ||||||| | ||||||||||||| Sbjct: 920 ggtagaacgccgcgatggcggcgccgacgaacgggccgacccaga 876
>ref|XM_506304.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1047_A06.117 mRNA Length = 1298 Score = 129 bits (65), Expect = 8e-27 Identities = 95/105 (90%) Strand = Plus / Minus Query: 332 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 391 |||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| Sbjct: 981 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactggt 922 Query: 392 ggtagaaggccgcgatcgccgcgccgatcatggggccgacccaga 436 ||||||| |||||||| || ||||||| | ||||||||||||| Sbjct: 921 ggtagaacgccgcgatggcggcgccgacgaacgggccgacccaga 877
>gb|BT016583.1| Zea mays clone Contig416 mRNA sequence Length = 1348 Score = 129 bits (65), Expect = 8e-27 Identities = 80/85 (94%) Strand = Plus / Minus Query: 332 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 391 |||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||| Sbjct: 924 acgcgttgctcctgaaggagccgagggccttgatggcgccagcccggaggatgtactggt 865 Query: 392 ggtagaaggccgcgatcgccgcgcc 416 |||||||||||||||| || ||||| Sbjct: 864 ggtagaaggccgcgatggcagcgcc 840
>gb|AY243801.1| Zea mays aquaporin (PIP2-1) mRNA, complete cds Length = 1133 Score = 129 bits (65), Expect = 8e-27 Identities = 80/85 (94%) Strand = Plus / Minus Query: 332 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 391 |||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||| Sbjct: 872 acgcgttgctcctgaaggagccgagggccttgatggcgccagcccggaggatgtactggt 813 Query: 392 ggtagaaggccgcgatcgccgcgcc 416 |||||||||||||||| || ||||| Sbjct: 812 ggtagaaggccgcgatggcagcgcc 788
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 129 bits (65), Expect = 8e-27 Identities = 95/105 (90%) Strand = Plus / Minus Query: 332 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 391 |||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| Sbjct: 15355852 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactggt 15355793 Query: 392 ggtagaaggccgcgatcgccgcgccgatcatggggccgacccaga 436 ||||||| |||||||| || ||||||| | ||||||||||||| Sbjct: 15355792 ggtagaacgccgcgatggcggcgccgacgaacgggccgacccaga 15355748 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Minus Query: 387 ctggtggtagaaggccgcgatcgccgcgccgat 419 ||||||||| | |||||||||||||||||||| Sbjct: 15306498 ctggtggtacagcgccgcgatcgccgcgccgat 15306466 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 331 tacgcgttgctcctgaaggagccg 354 ||||||||||||| |||||||||| Sbjct: 15306551 tacgcgttgctccggaaggagccg 15306528
>dbj|AB029446.1| Oryza sativa (indica cultivar-group) rwc-2 mRNA for water channel protein, partial cds Length = 880 Score = 129 bits (65), Expect = 8e-27 Identities = 95/105 (90%) Strand = Plus / Minus Query: 332 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 391 |||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||| Sbjct: 544 acgcgttgctcctgaaggagccgagggccttgatggggccggcccggaggatgtactggt 485 Query: 392 ggtagaaggccgcgatcgccgcgccgatcatggggccgacccaga 436 ||||||| |||||||| || ||||||| | ||||||||||||| Sbjct: 484 ggtagaacgccgcgatggcggcgccgacgaacgggccgacccaga 440
>dbj|AP003802.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1047_A06 Length = 111673 Score = 129 bits (65), Expect = 8e-27 Identities = 95/105 (90%) Strand = Plus / Minus Query: 332 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 391 |||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| Sbjct: 62851 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactggt 62792 Query: 392 ggtagaaggccgcgatcgccgcgccgatcatggggccgacccaga 436 ||||||| |||||||| || ||||||| | ||||||||||||| Sbjct: 62791 ggtagaacgccgcgatggcggcgccgacgaacgggccgacccaga 62747 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Minus Query: 387 ctggtggtagaaggccgcgatcgccgcgccgat 419 ||||||||| | |||||||||||||||||||| Sbjct: 13497 ctggtggtacagcgccgcgatcgccgcgccgat 13465 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 331 tacgcgttgctcctgaaggagccg 354 ||||||||||||| |||||||||| Sbjct: 13550 tacgcgttgctccggaaggagccg 13527
>dbj|AK119656.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-H04, full insert sequence Length = 1216 Score = 129 bits (65), Expect = 8e-27 Identities = 95/105 (90%) Strand = Plus / Minus Query: 332 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 391 |||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| Sbjct: 978 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactggt 919 Query: 392 ggtagaaggccgcgatcgccgcgccgatcatggggccgacccaga 436 ||||||| |||||||| || ||||||| | ||||||||||||| Sbjct: 918 ggtagaacgccgcgatggcggcgccgacgaacgggccgacccaga 874
>dbj|AK105524.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-G02, full insert sequence Length = 1451 Score = 129 bits (65), Expect = 8e-27 Identities = 95/105 (90%) Strand = Plus / Minus Query: 332 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 391 |||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| Sbjct: 572 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactggt 513 Query: 392 ggtagaaggccgcgatcgccgcgccgatcatggggccgacccaga 436 ||||||| |||||||| || ||||||| | ||||||||||||| Sbjct: 512 ggtagaacgccgcgatggcggcgccgacgaacgggccgacccaga 468
>dbj|AK103970.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-B05, full insert sequence Length = 1242 Score = 129 bits (65), Expect = 8e-27 Identities = 95/105 (90%) Strand = Plus / Minus Query: 332 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 391 |||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| Sbjct: 978 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactggt 919 Query: 392 ggtagaaggccgcgatcgccgcgccgatcatggggccgacccaga 436 ||||||| |||||||| || ||||||| | ||||||||||||| Sbjct: 918 ggtagaacgccgcgatggcggcgccgacgaacgggccgacccaga 874
>dbj|AK072519.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023128K12, full insert sequence Length = 1298 Score = 129 bits (65), Expect = 8e-27 Identities = 95/105 (90%) Strand = Plus / Minus Query: 332 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 391 |||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| Sbjct: 981 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactggt 922 Query: 392 ggtagaaggccgcgatcgccgcgccgatcatggggccgacccaga 436 ||||||| |||||||| || ||||||| | ||||||||||||| Sbjct: 921 ggtagaacgccgcgatggcggcgccgacgaacgggccgacccaga 877
>gb|AF326492.1|AF326492 Zea mays plasma membrane integral protein ZmPIP2-2 mRNA, complete cds Length = 1268 Score = 121 bits (61), Expect = 2e-24 Identities = 79/85 (92%) Strand = Plus / Minus Query: 332 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 391 ||||||||||||||||||||||||| |||||||||||||| |||| ||| |||||||||| Sbjct: 996 acgcgttgctcctgaaggagccgagagccttgatggcgcccgcccggaggatgtactggt 937 Query: 392 ggtagaaggccgcgatcgccgcgcc 416 |||||||||||||||| || ||||| Sbjct: 936 ggtagaaggccgcgatggcagcgcc 912
>gb|AF326491.1|AF326491 Zea mays plasma membrane integral protein ZmPIP2-1 mRNA, complete cds Length = 1171 Score = 121 bits (61), Expect = 2e-24 Identities = 79/85 (92%) Strand = Plus / Minus Query: 332 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 391 ||||||||||||||||||||||||||||||||||||| || |||| ||| |||||||||| Sbjct: 943 acgcgttgctcctgaaggagccgagggccttgatggccccagcccggaggatgtactggt 884 Query: 392 ggtagaaggccgcgatcgccgcgcc 416 |||||||||||||||| || ||||| Sbjct: 883 ggtagaaggccgcgatggcagcgcc 859
>dbj|AK103938.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-G03, full insert sequence Length = 1257 Score = 121 bits (61), Expect = 2e-24 Identities = 94/105 (89%) Strand = Plus / Minus Query: 332 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 391 ||||||||||||||| |||||||||||| |||||||||||||||| ||| |||||||||| Sbjct: 980 acgcgttgctcctgagggagccgagggctttgatggcgccggcccggaggatgtactggt 921 Query: 392 ggtagaaggccgcgatcgccgcgccgatcatggggccgacccaga 436 ||||||| |||||||| || ||||||| | ||||||||||||| Sbjct: 920 ggtagaacgccgcgatggcggcgccgacgaacgggccgacccaga 876
>gb|AY109332.1| Zea mays CL502_5 mRNA sequence Length = 1969 Score = 121 bits (61), Expect = 2e-24 Identities = 79/85 (92%) Strand = Plus / Minus Query: 332 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 391 ||||||||||||||||||||||||| |||||||||||||| |||| ||| |||||||||| Sbjct: 1646 acgcgttgctcctgaaggagccgagagccttgatggcgcccgcccggaggatgtactggt 1587 Query: 392 ggtagaaggccgcgatcgccgcgcc 416 |||||||||||||||| || ||||| Sbjct: 1586 ggtagaaggccgcgatggcagcgcc 1562 Score = 42.1 bits (21), Expect = 1.5 Identities = 45/53 (84%) Strand = Plus / Minus Query: 384 gtactggtggtagaaggccgcgatcgccgcgccgatcatggggccgacccaga 436 ||||||||||||| ||| ||||| || |||||||||| ||||| ||||||| Sbjct: 321 gtactggtggtaggcggcggcgatggcggcgccgatcagtgggcccacccaga 269
>ref|XM_466869.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1214 Score = 54.0 bits (27), Expect = 4e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 366 ggcgccggccctgagtatgtactggtggtagaaggccgcgatcgccgcgccgatcatggg 425 ||||| |||||| || | ||||||||||||| ||| ||||| || |||||||||| ||| Sbjct: 901 ggcgctggccctcagcacgtactggtggtaggcggcggcgatggcggcgccgatcagggg 842 Query: 426 gccgacccaga 436 ||| ||||||| Sbjct: 841 gcccacccaga 831
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 54.0 bits (27), Expect = 4e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 366 ggcgccggccctgagtatgtactggtggtagaaggccgcgatcgccgcgccgatcatggg 425 ||||| |||||| || | ||||||||||||| ||| ||||| || |||||||||| ||| Sbjct: 25184682 ggcgctggccctcagcacgtactggtggtaggcggcggcgatggcggcgccgatcagggg 25184623 Query: 426 gccgacccaga 436 ||| ||||||| Sbjct: 25184622 gcccacccaga 25184612 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 aaattaaaacaggaaaagga 104 |||||||||||||||||||| Sbjct: 751943 aaattaaaacaggaaaagga 751962
>dbj|AP006168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1469H02 Length = 136602 Score = 54.0 bits (27), Expect = 4e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 366 ggcgccggccctgagtatgtactggtggtagaaggccgcgatcgccgcgccgatcatggg 425 ||||| |||||| || | ||||||||||||| ||| ||||| || |||||||||| ||| Sbjct: 85075 ggcgctggccctcagcacgtactggtggtaggcggcggcgatggcggcgccgatcagggg 85016 Query: 426 gccgacccaga 436 ||| ||||||| Sbjct: 85015 gcccacccaga 85005
>dbj|AK061782.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-E03, full insert sequence Length = 1214 Score = 54.0 bits (27), Expect = 4e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 366 ggcgccggccctgagtatgtactggtggtagaaggccgcgatcgccgcgccgatcatggg 425 ||||| |||||| || | ||||||||||||| ||| ||||| || |||||||||| ||| Sbjct: 901 ggcgctggccctcagcacgtactggtggtaggcggcggcgatggcggcgccgatcagggg 842 Query: 426 gccgacccaga 436 ||| ||||||| Sbjct: 841 gcccacccaga 831
>ref|XM_475029.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 849 Score = 50.1 bits (25), Expect = 0.006 Identities = 49/57 (85%) Strand = Plus / Minus Query: 336 gttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggtg 392 |||||||| ||||||||| || ||||||||||| | |||| ||| ||||||||||| Sbjct: 837 gttgctccggaaggagcccagcgccttgatggctgccgcccggaggatgtactggtg 781
>emb|AL731636.3|OSJN00281 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0093G06, complete sequence Length = 127420 Score = 50.1 bits (25), Expect = 0.006 Identities = 49/57 (85%) Strand = Plus / Plus Query: 336 gttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggtg 392 |||||||| ||||||||| || ||||||||||| | |||| ||| ||||||||||| Sbjct: 91012 gttgctccggaaggagcccagcgccttgatggctgccgcccggaggatgtactggtg 91068
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 50.1 bits (25), Expect = 0.006 Identities = 49/57 (85%) Strand = Plus / Plus Query: 336 gttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggtg 392 |||||||| ||||||||| || ||||||||||| | |||| ||| ||||||||||| Sbjct: 8906703 gttgctccggaaggagcccagcgccttgatggctgccgcccggaggatgtactggtg 8906759
>dbj|AK102155.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086E18, full insert sequence Length = 1308 Score = 50.1 bits (25), Expect = 0.006 Identities = 49/57 (85%) Strand = Plus / Minus Query: 336 gttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggtg 392 |||||||| ||||||||| || ||||||||||| | |||| ||| ||||||||||| Sbjct: 936 gttgctccggaaggagcccagcgccttgatggctgccgcccggaggatgtactggtg 880
>dbj|AK061491.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-B05, full insert sequence Length = 1309 Score = 50.1 bits (25), Expect = 0.006 Identities = 49/57 (85%) Strand = Plus / Minus Query: 336 gttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggtg 392 |||||||| ||||||||| || ||||||||||| | |||| ||| ||||||||||| Sbjct: 930 gttgctccggaaggagcccagcgccttgatggctgccgcccggaggatgtactggtg 874
>dbj|AK061312.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-B10, full insert sequence Length = 1296 Score = 50.1 bits (25), Expect = 0.006 Identities = 49/57 (85%) Strand = Plus / Minus Query: 336 gttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggtg 392 |||||||| ||||||||| || ||||||||||| | |||| ||| ||||||||||| Sbjct: 924 gttgctccggaaggagcccagcgccttgatggctgccgcccggaggatgtactggtg 868
>gb|AY903443.1| Astragalus membranaceus clone AM79 putative plasma membrane intrinsic protein mRNA, complete cds Length = 1120 Score = 48.1 bits (24), Expect = 0.024 Identities = 30/32 (93%) Strand = Plus / Minus Query: 337 ttgctcctgaaggagccgagggccttgatggc 368 |||||||||||||| ||||| ||||||||||| Sbjct: 839 ttgctcctgaaggatccgagagccttgatggc 808
>dbj|AK119661.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-141-B01, full insert sequence Length = 1067 Score = 46.1 bits (23), Expect = 0.096 Identities = 47/55 (85%) Strand = Plus / Minus Query: 338 tgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggtg 392 |||||| ||||||||| || ||||||||||| | |||| ||| ||||||||||| Sbjct: 821 tgctccggaaggagcccagcgccttgatggctgccgcccggaggatgtactggtg 767
>gb|BT017668.1| Zea mays clone EL01N0441H09.c mRNA sequence Length = 698 Score = 44.1 bits (22), Expect = 0.38 Identities = 43/50 (86%) Strand = Plus / Minus Query: 387 ctggtggtagaaggccgcgatcgccgcgccgatcatggggccgacccaga 436 ||||||||||| ||| || | ||| |||||||| | |||||||||||||| Sbjct: 397 ctggtggtagatggcagccagcgcagcgccgatgaaggggccgacccaga 348
>gb|AY243800.1| Zea mays plasma membrane intrinsic protein (PIP1-1) mRNA, complete cds Length = 1086 Score = 44.1 bits (22), Expect = 0.38 Identities = 43/50 (86%) Strand = Plus / Minus Query: 387 ctggtggtagaaggccgcgatcgccgcgccgatcatggggccgacccaga 436 ||||||||||| ||| || | ||| |||||||| | |||||||||||||| Sbjct: 828 ctggtggtagatggcagccagcgcagcgccgatgaaggggccgacccaga 779
>emb|X82633.1|ZMTRAPRO Z.mays mRNA for transmembrane protein Length = 1169 Score = 44.1 bits (22), Expect = 0.38 Identities = 43/50 (86%) Strand = Plus / Minus Query: 387 ctggtggtagaaggccgcgatcgccgcgccgatcatggggccgacccaga 436 ||||||||||| ||| || | ||| |||||||| | |||||||||||||| Sbjct: 885 ctggtggtagatggcagccagcgcagcgccgatgaaggggccgacccaga 836
>emb|X76911.1|HVEMIP H.vulgare mRNA for transmembrane protein Length = 1225 Score = 44.1 bits (22), Expect = 0.38 Identities = 43/50 (86%) Strand = Plus / Minus Query: 387 ctggtggtagaaggccgcgatcgccgcgccgatcatggggccgacccaga 436 ||||||||||| ||| || | ||| |||||||| | |||||||||||||| Sbjct: 898 ctggtggtagatggcggccagcgcggcgccgatgaaggggccgacccaga 849
>emb|AJ310639.1|HVU310639 Hordeum vulgare partial pip1 gene for putative aquaporin Length = 1291 Score = 44.1 bits (22), Expect = 0.38 Identities = 43/50 (86%) Strand = Plus / Minus Query: 387 ctggtggtagaaggccgcgatcgccgcgccgatcatggggccgacccaga 436 ||||||||||| ||| || | ||| |||||||| | |||||||||||||| Sbjct: 1291 ctggtggtagatggcggccagcgcggcgccgatgaaggggccgacccaga 1242
>ref|NM_187081.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1215 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Minus Query: 387 ctggtggtagaaggccgcgatcgccgcgccgat 419 ||||||||| | |||||||||||||||||||| Sbjct: 901 ctggtggtacagcgccgcgatcgccgcgccgat 869 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 331 tacgcgttgctcctgaaggagccg 354 ||||||||||||| |||||||||| Sbjct: 954 tacgcgttgctccggaaggagccg 931
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 401 ccgcgatcgccgcgccgatcatggg 425 ||||||||||||||||||| ||||| Sbjct: 2960721 ccgcgatcgccgcgccgatgatggg 2960697
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 401 ccgcgatcgccgcgccgatcatggg 425 ||||||||||||||||||| ||||| Sbjct: 88152 ccgcgatcgccgcgccgatgatggg 88128
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 399 ggccgcgatcgccgcgccgatcatg 423 |||||||||||| |||||||||||| Sbjct: 2316707 ggccgcgatcgcggcgccgatcatg 2316731
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 401 ccgcgatcgccgcgccgatcatggg 425 ||||||||||||||||||| ||||| Sbjct: 3933700 ccgcgatcgccgcgccgatgatggg 3933676
>gb|AF326494.1|AF326494 Zea mays plasma membrane integral protein ZmPIP2-4 mRNA, complete cds Length = 1171 Score = 42.1 bits (21), Expect = 1.5 Identities = 63/77 (81%) Strand = Plus / Minus Query: 360 cttgatggcgccggccctgagtatgtactggtggtagaaggccgcgatcgccgcgccgat 419 |||| |||||| |||||| || | ||||||||||||| ||| ||||| || ||||| || Sbjct: 927 cttggtggcgctggccctcagcacgtactggtggtaggcggcggcgatggcggcgccaat 868 Query: 420 catggggccgacccaga 436 || ||||| ||||||| Sbjct: 867 cagtgggcccacccaga 851
>gb|AF326493.1|AF326493 Zea mays plasma membrane integral protein ZmPIP2-3 mRNA, complete cds Length = 1156 Score = 42.1 bits (21), Expect = 1.5 Identities = 45/53 (84%) Strand = Plus / Minus Query: 384 gtactggtggtagaaggccgcgatcgccgcgccgatcatggggccgacccaga 436 ||||||||||||| ||| ||||| || |||||||||| ||||| ||||||| Sbjct: 893 gtactggtggtaggcggcggcgatggcggcgccgatcagtgggcccacccaga 841
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 400 gccgcgatcgccgcgccgatc 420 ||||||||||||||||||||| Sbjct: 1116192 gccgcgatcgccgcgccgatc 1116212
>gb|AF154641.1| Nicotiana tabacum clone PR16 mRNA sequence Length = 1100 Score = 42.1 bits (21), Expect = 1.5 Identities = 51/61 (83%) Strand = Plus / Minus Query: 337 ttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggtggtag 396 |||||||||||||| || || || |||||||| || || | ||| ||| ||||||||||| Sbjct: 900 ttgctcctgaaggaaccaagagctttgatggcaccagcacggaggatgaactggtggtag 841 Query: 397 a 397 | Sbjct: 840 a 840
>dbj|AP004668.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0475E07 Length = 139961 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Minus Query: 387 ctggtggtagaaggccgcgatcgccgcgccgat 419 ||||||||| | |||||||||||||||||||| Sbjct: 92511 ctggtggtacagcgccgcgatcgccgcgccgat 92479 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 331 tacgcgttgctcctgaaggagccg 354 ||||||||||||| |||||||||| Sbjct: 92564 tacgcgttgctccggaaggagccg 92541
>dbj|AK072632.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023132K03, full insert sequence Length = 1215 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Minus Query: 387 ctggtggtagaaggccgcgatcgccgcgccgat 419 ||||||||| | |||||||||||||||||||| Sbjct: 901 ctggtggtacagcgccgcgatcgccgcgccgat 869 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 331 tacgcgttgctcctgaaggagccg 354 ||||||||||||| |||||||||| Sbjct: 954 tacgcgttgctccggaaggagccg 931
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 401 ccgcgatcgccgcgccgatcatggg 425 ||||||||||||||||||| ||||| Sbjct: 3637218 ccgcgatcgccgcgccgatgatggg 3637194
>gb|AE000657.1| Aquifex aeolicus VF5, complete genome Length = 1551335 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 85 aaattaaaacaggaaaaggaa 105 ||||||||||||||||||||| Sbjct: 624952 aaattaaaacaggaaaaggaa 624932
>dbj|AB058678.1| Pyrus communis Py-PIP2-1 mRNA for plasma membrane intrinsic protein 2-1, complete cds Length = 1311 Score = 42.1 bits (21), Expect = 1.5 Identities = 54/65 (83%) Strand = Plus / Minus Query: 337 ttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggtggtag 396 ||||| ||||| || || || ||||||||||| || || || || ||||| ||||||||| Sbjct: 907 ttgcttctgaaagatcccagagccttgatggctcctgctctcagaatgtattggtggtag 848 Query: 397 aaggc 401 ||||| Sbjct: 847 aaggc 843
>gb|DQ202709.1| Olea europaea plasma membrane intrinsic protein (pip2) mRNA, complete cds Length = 1260 Score = 40.1 bits (20), Expect = 5.9 Identities = 35/40 (87%) Strand = Plus / Minus Query: 358 gccttgatggcgccggccctgagtatgtactggtggtaga 397 ||||||||||| || ||||| || ||||| |||||||||| Sbjct: 915 gccttgatggctcctgcccttaggatgtattggtggtaga 876
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 ggccgcgatcgccgcgccga 418 |||||||||||||||||||| Sbjct: 1911596 ggccgcgatcgccgcgccga 1911615
>gb|AC016250.5| Homo sapiens chromosome 8 clone RP11-516P9, complete sequence Length = 199569 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 ttaaaacaggaaaaggaatg 107 |||||||||||||||||||| Sbjct: 92945 ttaaaacaggaaaaggaatg 92926
>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence Length = 1471779 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 399 ggccgcgatcgccgcgccga 418 |||||||||||||||||||| Sbjct: 748148 ggccgcgatcgccgcgccga 748129
>emb|BX545848.23| Zebrafish DNA sequence from clone DKEY-8O19 in linkage group 20 Contains the gene for a novel protein (zgc:63746), the gene for a novel protein (zgc:55614), the gene for the 5' end of a novel protein similar to mouse and human cyclin-dependent kinase (CDC2-like) 11 (CDK11), the gene for a novel protein similar to vertebrate mitogen-activated protein kinase kinase kinase 5 (MAP3K5), a novel gene and eleven CpG islands, complete sequence Length = 199986 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 gctaaattaaaacaggaaaa 101 |||||||||||||||||||| Sbjct: 129625 gctaaattaaaacaggaaaa 129606
>gb|AC025207.5| Homo sapiens chromosome 8, clone RP11-193J8, complete sequence Length = 157375 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 ttaaaacaggaaaaggaatg 107 |||||||||||||||||||| Sbjct: 143776 ttaaaacaggaaaaggaatg 143795
>emb|AL596209.13| Mouse DNA sequence from clone RP23-278F12 on chromosome 11 Contains the 3' end of the Ulk2 gene for Unc-51 like kinase 2 (C. elegans), the Prpsap2 gene for phosphoribosyl pyrophosphate synthetase-associated protein 2, the gene for a novel sodium/glucose cotransporter protein, the gene for a novel protein (2310040C09Rik), the Grap gene for GRB2-related adaptor protein and a CpG island, complete sequence Length = 186359 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 tttctctttggatggatgga 274 |||||||||||||||||||| Sbjct: 79799 tttctctttggatggatgga 79818
>gb|AC083943.8| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0044A10, from chromosome 10, complete sequence Length = 169270 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 agaaggccgcgatcgccgcg 414 |||||||||||||||||||| Sbjct: 92267 agaaggccgcgatcgccgcg 92286
>gb|AF141642.1|AF141642 Vitis berlandieri x Vitis rupestris putative aquaporin PIP2-1 (PIP2-1) mRNA, complete cds Length = 1300 Score = 40.1 bits (20), Expect = 5.9 Identities = 53/64 (82%) Strand = Plus / Minus Query: 338 tgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggtggtaga 397 |||||||||| || || || |||||||| || || || || | |||| |||||||||||| Sbjct: 912 tgctcctgaatgacccaagagccttgatagctccagctctcaatatgaactggtggtaga 853 Query: 398 aggc 401 |||| Sbjct: 852 aggc 849
>gb|AY714381.1| Aegiceras corniculatum aquaporin 2 mRNA, partial cds Length = 740 Score = 40.1 bits (20), Expect = 5.9 Identities = 47/56 (83%) Strand = Plus / Minus Query: 349 gagccgagggccttgatggcgccggccctgagtatgtactggtggtagaaggccgc 404 |||||||| ||||| || || || || | ||| ||| ||||||||||||||||||| Sbjct: 563 gagccgagagccttaatcgcccctgctcggaggatgaactggtggtagaaggccgc 508
>gb|AY671950.1| Aegiceras corniculatum aquaporin 2 (PIP2) mRNA, complete cds Length = 855 Score = 40.1 bits (20), Expect = 5.9 Identities = 47/56 (83%) Strand = Plus / Minus Query: 349 gagccgagggccttgatggcgccggccctgagtatgtactggtggtagaaggccgc 404 |||||||| ||||| || || || || | ||| ||| ||||||||||||||||||| Sbjct: 836 gagccgagagccttaatcgcccctgctcggaggatgaactggtggtagaaggccgc 781
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 agaaggccgcgatcgccgcg 414 |||||||||||||||||||| Sbjct: 13136748 agaaggccgcgatcgccgcg 13136767
>dbj|AB219525.1| Hordeum vulgare HvPIP2;4 mRNA for PIP aquaporin isoform, complete cds Length = 1343 Score = 40.1 bits (20), Expect = 5.9 Identities = 41/48 (85%) Strand = Plus / Minus Query: 360 cttgatggcgccggccctgagtatgtactggtggtagaaggccgcgat 407 |||| |||||| |||||| || | |||||||||||| ||||| ||||| Sbjct: 913 cttggtggcgctggccctcagcacgtactggtggtacaaggcggcgat 866
>gb|DQ339464.1| Vitis pseudoreticulata aquaporin protein (PIP2-1) mRNA, complete cds Length = 480 Score = 40.1 bits (20), Expect = 5.9 Identities = 53/64 (82%) Strand = Plus / Minus Query: 338 tgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggtggtaga 397 |||||||||| || || || |||||||| || || || || | |||| |||||||||||| Sbjct: 466 tgctcctgaatgacccaagagccttgatagctccagctctcaatatgaactggtggtaga 407 Query: 398 aggc 401 |||| Sbjct: 406 aggc 403
>dbj|AP004867.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0036E06 Length = 137926 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 aaattaaaacaggaaaagga 104 |||||||||||||||||||| Sbjct: 30074 aaattaaaacaggaaaagga 30093
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 ggccgcgatcgccgcgccga 418 |||||||||||||||||||| Sbjct: 5135849 ggccgcgatcgccgcgccga 5135868
>gb|AF139815.1|AF139815 Triticum aestivum plasma membrane intrinsic protein 2 (PIP2) mRNA, complete cds Length = 1235 Score = 40.1 bits (20), Expect = 5.9 Identities = 47/56 (83%) Strand = Plus / Minus Query: 366 ggcgccggccctgagtatgtactggtggtagaaggccgcgatcgccgcgccgatca 421 ||||| |||||| || | ||||||||||||| ||| ||||| || |||||||||| Sbjct: 875 ggcgctggccctcagcacgtactggtggtaggcggcggcgatggcggcgccgatca 820
>dbj|AP004090.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1399_H05 Length = 147670 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 aaattaaaacaggaaaagga 104 |||||||||||||||||||| Sbjct: 108838 aaattaaaacaggaaaagga 108857
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 411 cgcgccgatcatggggccga 430 |||||||||||||||||||| Sbjct: 1377402 cgcgccgatcatggggccga 1377383
>emb|BX248523.8| Zebrafish DNA sequence from clone CH211-257G8 in linkage group 20, complete sequence Length = 169849 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 gctaaattaaaacaggaaaa 101 |||||||||||||||||||| Sbjct: 35269 gctaaattaaaacaggaaaa 35288
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 agaaggccgcgatcgccgcg 414 |||||||||||||||||||| Sbjct: 13144088 agaaggccgcgatcgccgcg 13144107
>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome Length = 5528445 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 tatggtcgctaaattaaaac 94 |||||||||||||||||||| Sbjct: 4757676 tatggtcgctaaattaaaac 4757657
>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome Length = 5498450 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 tatggtcgctaaattaaaac 94 |||||||||||||||||||| Sbjct: 4688695 tatggtcgctaaattaaaac 4688676
>dbj|AP003548.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1448A5 Length = 178420 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 ttaaaacaggaaaaggaatg 107 |||||||||||||||||||| Sbjct: 145388 ttaaaacaggaaaaggaatg 145407 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,580,678 Number of Sequences: 3902068 Number of extensions: 3580678 Number of successful extensions: 62882 Number of sequences better than 10.0: 73 Number of HSP's better than 10.0 without gapping: 74 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61827 Number of HSP's gapped (non-prelim): 1052 length of query: 439 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 417 effective length of database: 17,147,199,772 effective search space: 7150382304924 effective search space used: 7150382304924 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
