Clone Information

BLAST Search Result

Clone Name	rbaet12d06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RPB1_PLAFD (P14248) DNA-directed RNA polymerase II largest subun...	42	5e-04
2	RPB1_SCHPO (P36594) DNA-directed RNA polymerase II largest subun...	41	0.001
3	RPB1_CAEBR (P35074) DNA-directed RNA polymerase II largest subun...	40	0.002
4	RPB1_MOUSE (P08775) DNA-directed RNA polymerase II largest subun...	40	0.002
5	RPB1_HUMAN (P24928) DNA-directed RNA polymerase II largest subun...	40	0.002
6	RPB1_ARATH (P18616) DNA-directed RNA polymerase II largest subun...	40	0.002
7	RPB1_CRIGR (P11414) DNA-directed RNA polymerase II largest subun...	40	0.002
8	RPB1_CAEEL (P16356) DNA-directed RNA polymerase II largest subun...	40	0.002
9	RPB1_DICDI (P35084) DNA-directed RNA polymerase II largest subun...	40	0.003
10	RPB1_ENCCU (Q8SSC4) DNA-directed RNA polymerase II largest subun...	39	0.004
11	RPB1_YEAST (P04050) DNA-directed RNA polymerase II largest subun...	39	0.004
12	RPB1_ASHGO (Q75A34) DNA-directed RNA polymerase II largest subun...	39	0.004
13	RPB1_DROME (P04052) DNA-directed RNA polymerase II largest subun...	37	0.015
14	HSPC_ELECI (P83183) Cysteine-rich protamine	35	0.058
15	GRN_CAVPO (P28797) Granulins precursor (Proepithelin) (PEPI) [Co...	33	0.29
16	AGRN_RAT (P25304) Agrin precursor	32	0.83
17	MCSP_MOUSE (P15265) Sperm mitochondrial-associated cysteine-rich...	31	1.1
18	MCSP_RAT (Q64298) Sperm mitochondrial-associated cysteine-rich p...	31	1.1
19	VTS1_DEBHA (Q6BSL1) Protein VTS1	31	1.4
20	PSKR_ARATH (Q9ZVR7) Putative phytosulfokine receptor precursor (...	30	2.4
21	AGI2_WHEAT (P02876) Agglutinin isolectin 2 precursor (WGA2) (Iso...	30	3.2
22	AF2_GRASP (P61409) Alpha mechanotoxin (Peptide GsAF II)	30	3.2
23	ZFP90_RAT (Q4V8A8) Zinc finger protein 90 (Zfp-90)	29	4.1
24	AGI3_WHEAT (P10969) Agglutinin isolectin 3 precursor (WGA3) (Fra...	29	4.1
25	GRN_HUMAN (P28799) Granulins precursor (Proepithelin) (PEPI) [Co...	29	4.1
26	CCD70_MACFA (Q4R9C9) Coiled-coil domain-containing protein 70 pr...	29	4.1
27	ZFP90_MOUSE (Q61967) Zinc finger protein 90 (Zfp-90) (Zinc finge...	29	4.1
28	MT_PARLI (P80367) Metallothionein (MT)	29	4.1
29	VWF_CANFA (Q28295) Von Willebrand factor precursor (vWF)	29	5.4
30	CCD70_HUMAN (Q6NSX1) Coiled-coil domain-containing protein 70 pr...	29	5.4
31	NUDEL_DROME (P98159) Serine protease nudel precursor (EC 3.4.21.-)	28	7.1
32	KHSE_SYNPX (Q7U659) Homoserine kinase (EC 2.7.1.39) (HSK) (HK)	28	7.1
33	ZNF22_RAT (Q9ERU2) Zinc finger protein 22 (Kruppel-type zinc fin...	28	7.1
34	ZNF22_MOUSE (Q9ERU3) Zinc finger protein 22 (Zinc finger protein...	28	7.1
35	SEPP1_MOUSE (P70274) Selenoprotein P precursor (SeP) (Plasma sel...	28	7.1
36	ZFP90_HUMAN (Q8TF47) Zinc finger protein 90 homolog (Zfp-90)	28	7.1
37	ENPP3_HUMAN (O14638) Ectonucleotide pyrophosphatase/phosphodiest...	28	9.2
38	MCSP_HUMAN (P49901) Sperm mitochondrial-associated cysteine-rich...	28	9.2
39	NDC1_XENLA (Q6AX31) Nucleoporin NDC1 (xNDC1) (Transmembrane prot...	28	9.2
40	KRA59_HUMAN (P26371) Keratin-associated protein 5-9 (Keratin-ass...	28	9.2
41	MT_STENE (P55953) Metallothionein (MT)	28	9.2
42	GRN1_CYPCA (P81013) Granulin-1	28	9.2

>RPB1_PLAFD (P14248) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 2452

 Score = 42.4 bits (98), Expect = 5e-04
 Identities = 19/74 (25%), Positives = 39/74 (52%)
 Frame = +1

Query: 139  NQSTHISLSSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATR 318
            NQ+  ++++S Y  + P Y + +P Y+  +P ++  SP Y+  +P ++  S  Y   + +
Sbjct: 2272 NQNDQMNVNSQYNVMSPVYSVTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPK 2331

Query: 319  YGIVAPSYDIVVPR 360
            Y   +P Y    P+
Sbjct: 2332 YSPTSPKYSPTSPK 2345



 Score = 30.8 bits (68), Expect = 1.4
 Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 11/93 (11%)
 Frame = +1

Query: 115  HELLGGRGNQSTHISLSSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSL 294
            + +   + N + ++  S + Y   P  D+ +P   I    HNI SP Y+  +P +N  + 
Sbjct: 2207 YNVFSPKPNINNNVIQSPNIYSPNPMLDIFSPKPQIN---HNIYSPSYSPTSPTYNANNA 2263

Query: 295  SYDIAA-----------TRYGIVAPSYDIVVPR 360
             Y   +           ++Y +++P Y +  P+
Sbjct: 2264 YYSPTSPKNQNDQMNVNSQYNVMSPVYSVTSPK 2296

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>RPB1_SCHPO (P36594) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RNA polymerase II subunit 1)
          Length = 1752

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 24/76 (31%), Positives = 35/76 (46%)
 Frame = +1

Query: 130  GRGNQSTHISLSSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIA 309
            G G  S   S SS  Y   P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   
Sbjct: 1550 GYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSAT 1609

Query: 310  ATRYGIVAPSYDIVVP 357
            +  Y   +PSY    P
Sbjct: 1610 SPSYSPTSPSYSPTSP 1625



 Score = 40.8 bits (94), Expect = 0.001
 Identities = 21/76 (27%), Positives = 34/76 (44%)
 Frame = +1

Query: 130  GRGNQSTHISLSSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIA 309
            G      ++  S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   
Sbjct: 1564 GYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPT 1623

Query: 310  ATRYGIVAPSYDIVVP 357
            +  Y   +PSY    P
Sbjct: 1624 SPSYSPTSPSYSPTSP 1639



 Score = 39.7 bits (91), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1603 SPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1662

Query: 343  DIVVP 357
                P
Sbjct: 1663 SPTSP 1667



 Score = 39.7 bits (91), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1589 SPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1648

Query: 343  DIVVP 357
                P
Sbjct: 1649 SPTSP 1653



 Score = 39.7 bits (91), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1582 SPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1641

Query: 343  DIVVP 357
                P
Sbjct: 1642 SPTSP 1646



 Score = 39.3 bits (90), Expect = 0.004
 Identities = 20/70 (28%), Positives = 34/70 (48%)
 Frame = +1

Query: 148  THISLSSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGI 327
            ++ + S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y  
Sbjct: 1605 SYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1664

Query: 328  VAPSYDIVVP 357
             +PSY    P
Sbjct: 1665 TSPSYSPTSP 1674



 Score = 39.3 bits (90), Expect = 0.004
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1596 SPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1655

Query: 343  DIVVP 357
                P
Sbjct: 1656 SPTSP 1660



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1687 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1746

Query: 343  DIVVP 357
                P
Sbjct: 1747 SPTSP 1751



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1680 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1739

Query: 343  DIVVP 357
                P
Sbjct: 1740 SPTSP 1744



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1673 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1732

Query: 343  DIVVP 357
                P
Sbjct: 1733 SPTSP 1737



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1666 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1725

Query: 343  DIVVP 357
                P
Sbjct: 1726 SPTSP 1730



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1659 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1718

Query: 343  DIVVP 357
                P
Sbjct: 1719 SPTSP 1723



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1652 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1711

Query: 343  DIVVP 357
                P
Sbjct: 1712 SPTSP 1716



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1645 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1704

Query: 343  DIVVP 357
                P
Sbjct: 1705 SPTSP 1709



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1638 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1697

Query: 343  DIVVP 357
                P
Sbjct: 1698 SPTSP 1702



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1631 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1690

Query: 343  DIVVP 357
                P
Sbjct: 1691 SPTSP 1695



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1624 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1683

Query: 343  DIVVP 357
                P
Sbjct: 1684 SPTSP 1688



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1617 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1676

Query: 343  DIVVP 357
                P
Sbjct: 1677 SPTSP 1681



 Score = 35.4 bits (80), Expect = 0.058
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPS 339
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PS
Sbjct: 1694 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1752

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>RPB1_CAEBR (P35074) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1853

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 20/65 (30%), Positives = 33/65 (50%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY  ++ RY   +P+Y
Sbjct: 1627 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPRYSPTSPTY 1686

Query: 343  DIVVP 357
                P
Sbjct: 1687 SPTSP 1691



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 21/67 (31%), Positives = 33/67 (49%)
 Frame = +1

Query: 160  LSSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPS 339
            +S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PS
Sbjct: 1612 VSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1671

Query: 340  YDIVVPR 360
            Y    PR
Sbjct: 1672 YSPSSPR 1678



 Score = 36.2 bits (82), Expect = 0.034
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +P Y
Sbjct: 1620 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPRY 1679

Query: 343  DIVVP 357
                P
Sbjct: 1680 SPTSP 1684



 Score = 35.8 bits (81), Expect = 0.044
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S +Y   +  Y   +PSY
Sbjct: 1655 SPSYSPTSPSYSPTSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSY 1714

Query: 343  D 345
            +
Sbjct: 1715 E 1715



 Score = 35.4 bits (80), Expect = 0.058
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S +Y   +  Y   +P+Y
Sbjct: 1648 SPSYSPTSPSYSPTSPSYSPTSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTY 1707

Query: 343  DIVVP 357
                P
Sbjct: 1708 SPTSP 1712



 Score = 35.4 bits (80), Expect = 0.058
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S +Y   +  Y   +P+Y
Sbjct: 1641 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTY 1700

Query: 343  DIVVP 357
                P
Sbjct: 1701 SPTSP 1705



 Score = 35.0 bits (79), Expect = 0.075
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S  Y   +  Y   +P+Y
Sbjct: 1634 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPRYSPTSPTYSPTSPTY 1693

Query: 343  DIVVP 357
                P
Sbjct: 1694 SPTSP 1698



 Score = 33.1 bits (74), Expect = 0.29
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S  +    P Y   +P Y+  +P H+  SP    V+P ++  S SY   +  Y   +PSY
Sbjct: 1582 SPGFSMTSPHYSPTSPSYSPTSPAHHGQSP----VSPSYSPTSPSYSPTSPSYSPTSPSY 1637

Query: 343  DIVVP 357
                P
Sbjct: 1638 SPTSP 1642



 Score = 32.3 bits (72), Expect = 0.49
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +1

Query: 193  YDMVAP*YNIVAPCHNIVSPGYNIVAPIH---NMVSLSYDIAATRYGIVAPSYDIVVP 357
            Y   +P +++ +P ++  SP Y+  +P H   + VS SY   +  Y   +PSY    P
Sbjct: 1578 YSPASPGFSMTSPHYSPTSPSYSPTSPAHHGQSPVSPSYSPTSPSYSPTSPSYSPTSP 1635



 Score = 32.0 bits (71), Expect = 0.64
 Identities = 20/65 (30%), Positives = 29/65 (44%)
 Frame = +1

Query: 148  THISLSSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGI 327
            T+   S SY    P+Y   +P Y+  +P +   SP YN  +P     S  Y   +  Y  
Sbjct: 1730 TYSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSP-RAFSSPQYSPTSPTYSP 1788

Query: 328  VAPSY 342
             +PSY
Sbjct: 1789 TSPSY 1793



 Score = 31.6 bits (70), Expect = 0.83
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPS 339
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S +Y   +  Y   +PS
Sbjct: 1662 SPSYSPTSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYEGYSPS 1720



 Score = 30.8 bits (68), Expect = 1.4
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = +1

Query: 193  YDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSYDIVVPR 360
            Y   +P Y+  +P ++  SP Y+  +P ++  S  Y  ++  Y   +P+Y+   PR
Sbjct: 1717 YSPSSPKYSPSSPTYSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSPR 1772



 Score = 28.9 bits (63), Expect = 5.4
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = +1

Query: 187  PRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAP 336
            P+Y   +P Y+  +P ++  SP Y+  +P ++  S +Y  ++  Y   +P
Sbjct: 1722 PKYSPSSPTYSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSP 1771



 Score = 28.1 bits (61), Expect = 9.2
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S +Y    P Y   +P Y+  +P ++  SP Y   +P +N  S     ++ +Y   +P+Y
Sbjct: 1728 SPTYSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTS-PRAFSSPQYSPTSPTY 1786

Query: 343  DIVVP 357
                P
Sbjct: 1787 SPTSP 1791

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>RPB1_MOUSE (P08775) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RPB1)
          Length = 1970

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = +1

Query: 127  GGRGNQSTHISLSS-SYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYD 303
            GG   QS   S +S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY 
Sbjct: 1606 GGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1665

Query: 304  IAATRYGIVAPSYDIVVP 357
              +  Y   +PSY    P
Sbjct: 1666 PTSPSYSPTSPSYSPTSP 1683



 Score = 39.3 bits (90), Expect = 0.004
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1626 SPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1685

Query: 343  DIVVP 357
                P
Sbjct: 1686 SPTSP 1690



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1682 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1741

Query: 343  DIVVP 357
                P
Sbjct: 1742 SPTSP 1746



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1675 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1734

Query: 343  DIVVP 357
                P
Sbjct: 1735 SPTSP 1739



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1668 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1727

Query: 343  DIVVP 357
                P
Sbjct: 1728 SPTSP 1732



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1661 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1720

Query: 343  DIVVP 357
                P
Sbjct: 1721 SPTSP 1725



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1654 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1713

Query: 343  DIVVP 357
                P
Sbjct: 1714 SPTSP 1718



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1647 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1706

Query: 343  DIVVP 357
                P
Sbjct: 1707 SPTSP 1711



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1640 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1699

Query: 343  DIVVP 357
                P
Sbjct: 1700 SPTSP 1704



 Score = 38.1 bits (87), Expect = 0.009
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S +Y    P Y   +P Y+  +P ++  SP Y   +P ++  S SY   +  Y   +PSY
Sbjct: 1745 SPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSY 1804

Query: 343  DIVVPR 360
                PR
Sbjct: 1805 SPSSPR 1810



 Score = 37.7 bits (86), Expect = 0.012
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +P+Y
Sbjct: 1696 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNY 1755

Query: 343  DIVVP 357
                P
Sbjct: 1756 TPTSP 1760



 Score = 37.7 bits (86), Expect = 0.012
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +P+Y
Sbjct: 1689 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNY 1748

Query: 343  DIVVP 357
                P
Sbjct: 1749 SPTSP 1753



 Score = 37.7 bits (86), Expect = 0.012
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S +Y    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1633 SPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1692

Query: 343  DIVVP 357
                P
Sbjct: 1693 SPTSP 1697



 Score = 37.4 bits (85), Expect = 0.015
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S +Y   +  Y   +PSY
Sbjct: 1703 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSY 1762

Query: 343  DIVVP 357
                P
Sbjct: 1763 SPTSP 1767



 Score = 37.0 bits (84), Expect = 0.020
 Identities = 19/60 (31%), Positives = 31/60 (51%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y   +P ++  SP Y+  +P ++  S SY  ++ RY   +P+Y
Sbjct: 1759 SPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTY 1818



 Score = 37.0 bits (84), Expect = 0.020
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y   +P ++  SP Y+  +P +   S +Y   +  Y   +PSY
Sbjct: 1738 SPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSY 1797

Query: 343  DIVVP 357
                P
Sbjct: 1798 SPTSP 1802



 Score = 37.0 bits (84), Expect = 0.020
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S +Y   +  Y   +PSY
Sbjct: 1710 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSY 1769

Query: 343  DIVVP 357
                P
Sbjct: 1770 SPTSP 1774



 Score = 36.6 bits (83), Expect = 0.026
 Identities = 19/71 (26%), Positives = 32/71 (45%)
 Frame = +1

Query: 148  THISLSSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGI 327
            T+   S SY    P Y   +P Y   +P ++  SP Y   +P ++  S  Y   + +Y  
Sbjct: 1817 TYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPASPKYSPTSPKYSPTSPKYSP 1876

Query: 328  VAPSYDIVVPR 360
             +P+Y    P+
Sbjct: 1877 TSPTYSPTTPK 1887



 Score = 36.6 bits (83), Expect = 0.026
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P +   SP Y+  +P ++  S +Y   +  Y   +PSY
Sbjct: 1731 SPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSY 1790

Query: 343  DIVVP 357
                P
Sbjct: 1791 SPTSP 1795



 Score = 36.6 bits (83), Expect = 0.026
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P +   S SY   +  Y   +P+Y
Sbjct: 1717 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNY 1776

Query: 343  DIVVP 357
                P
Sbjct: 1777 TPTSP 1781



 Score = 36.2 bits (82), Expect = 0.034
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y   +P ++  S SY   +  Y   +P+Y
Sbjct: 1724 SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNY 1783

Query: 343  DIVVP 357
                P
Sbjct: 1784 SPTSP 1788



 Score = 35.8 bits (81), Expect = 0.044
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    PRY   +P Y   +P ++  SP Y+  +P +   S SY  ++  Y   +P Y
Sbjct: 1801 SPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPASPKY 1860

Query: 343  DIVVPR 360
                P+
Sbjct: 1861 SPTSPK 1866



 Score = 35.0 bits (79), Expect = 0.075
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S  Y    P+Y   +P Y+   P ++  SP Y+  +P++   S  Y   +  Y   +P Y
Sbjct: 1864 SPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY 1923

Query: 343  DIVVP 357
                P
Sbjct: 1924 SPTSP 1928



 Score = 35.0 bits (79), Expect = 0.075
 Identities = 16/66 (24%), Positives = 32/66 (48%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S  Y    P+Y   +P Y+  +P ++  +P Y+  +P ++  S  Y   + +Y   +P+Y
Sbjct: 1857 SPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTY 1916

Query: 343  DIVVPR 360
                P+
Sbjct: 1917 SPTSPK 1922



 Score = 34.7 bits (78), Expect = 0.098
 Identities = 18/66 (27%), Positives = 32/66 (48%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S +Y    P Y   +P Y+  +P ++  SP Y+  +P +   S +Y  ++  Y   +PSY
Sbjct: 1773 SPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSY 1832

Query: 343  DIVVPR 360
                P+
Sbjct: 1833 SPTSPK 1838



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 19/76 (25%), Positives = 32/76 (42%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S +Y    P+Y   +P Y+  +P +   SP Y+  +P ++  S  Y   +  Y   +P  
Sbjct: 1878 SPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKG 1937

Query: 343  DIVVPR*NCVVIPGYN 390
                P       PGY+
Sbjct: 1938 STYSP-----TSPGYS 1948



 Score = 33.1 bits (74), Expect = 0.29
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P +   SP Y   +P ++  S SY   + +Y   +PSY
Sbjct: 1787 SPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSY 1846



 Score = 33.1 bits (74), Expect = 0.29
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S  Y   +  Y   +PSY
Sbjct: 1766 SPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSY 1825



 Score = 33.1 bits (74), Expect = 0.29
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S +Y    P Y   +P Y+  +P +   SP Y+  +P ++  S SY   +  Y   +P Y
Sbjct: 1752 SPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRY 1811



 Score = 32.7 bits (73), Expect = 0.37
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S  Y    P Y   +P Y   +P ++  SP Y+  +P ++  S +Y     +Y   +P+Y
Sbjct: 1836 SPKYTPTSPSYSPSSPEYTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTY 1895

Query: 343  DIVVP 357
                P
Sbjct: 1896 SPTSP 1900



 Score = 32.7 bits (73), Expect = 0.37
 Identities = 18/65 (27%), Positives = 28/65 (43%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P+Y   +P Y+  +P +   SP Y+  +P ++  S  Y   +  Y    P Y
Sbjct: 1829 SPSYSPTSPKYTPTSPSYSPSSPEYTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKY 1888

Query: 343  DIVVP 357
                P
Sbjct: 1889 SPTSP 1893



 Score = 32.7 bits (73), Expect = 0.37
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +1

Query: 187  PRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSYDIVVPR 360
            P Y   +P Y+  +P ++  SP Y   +P ++  S  Y  A+ +Y   +P Y    P+
Sbjct: 1816 PTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPASPKYSPTSPKYSPTSPK 1873



 Score = 32.7 bits (73), Expect = 0.37
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S +Y    P Y   +P Y+  +P ++  SP Y   +P +   S SY  ++  Y   +P Y
Sbjct: 1780 SPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKY 1839

Query: 343  DIVVP 357
                P
Sbjct: 1840 TPTSP 1844



 Score = 32.3 bits (72), Expect = 0.49
 Identities = 17/66 (25%), Positives = 30/66 (45%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  +  Y   +  Y   +P Y
Sbjct: 1843 SPSYSPSSPEYTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVY 1902

Query: 343  DIVVPR 360
                P+
Sbjct: 1903 TPTSPK 1908



 Score = 32.0 bits (71), Expect = 0.64
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S  Y    P+Y   +P Y+  +P ++  SP Y+   P ++  S +Y   +  Y   +P Y
Sbjct: 1850 SPEYTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKY 1909

Query: 343  DIVVP 357
                P
Sbjct: 1910 SPTSP 1914



 Score = 31.6 bits (70), Expect = 0.83
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S +Y    P Y   +P Y+  +P +   SP Y+  +P +   S  Y   + +Y   +P Y
Sbjct: 1815 SPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPASPKYSPTSPKYSPTSPKY 1874

Query: 343  DIVVP 357
                P
Sbjct: 1875 SPTSP 1879



 Score = 31.2 bits (69), Expect = 1.1
 Identities = 18/66 (27%), Positives = 28/66 (42%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y   +P +   SP Y+  +P ++  S  Y   +  Y   +P Y
Sbjct: 1794 SPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEY 1853

Query: 343  DIVVPR 360
                P+
Sbjct: 1854 TPASPK 1859



 Score = 28.1 bits (61), Expect = 9.2
 Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
 Frame = +1

Query: 148  THISLSSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATR--- 318
            T+   +  Y    P Y   +P Y   +P ++  SP Y+  +P ++  S +Y   + +   
Sbjct: 1880 TYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGST 1939

Query: 319  YGIVAPSYDIVVP 357
            Y   +P Y    P
Sbjct: 1940 YSPTSPGYSPTSP 1952

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>RPB1_HUMAN (P24928) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RPB1)
          Length = 1970

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = +1

Query: 127  GGRGNQSTHISLSS-SYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYD 303
            GG   QS   S +S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY 
Sbjct: 1606 GGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1665

Query: 304  IAATRYGIVAPSYDIVVP 357
              +  Y   +PSY    P
Sbjct: 1666 PTSPSYSPTSPSYSPTSP 1683



 Score = 39.3 bits (90), Expect = 0.004
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1626 SPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1685

Query: 343  DIVVP 357
                P
Sbjct: 1686 SPTSP 1690



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1682 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1741

Query: 343  DIVVP 357
                P
Sbjct: 1742 SPTSP 1746



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1675 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1734

Query: 343  DIVVP 357
                P
Sbjct: 1735 SPTSP 1739



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1668 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1727

Query: 343  DIVVP 357
                P
Sbjct: 1728 SPTSP 1732



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1661 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1720

Query: 343  DIVVP 357
                P
Sbjct: 1721 SPTSP 1725



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1654 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1713

Query: 343  DIVVP 357
                P
Sbjct: 1714 SPTSP 1718



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1647 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1706

Query: 343  DIVVP 357
                P
Sbjct: 1707 SPTSP 1711



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1640 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1699

Query: 343  DIVVP 357
                P
Sbjct: 1700 SPTSP 1704



 Score = 38.1 bits (87), Expect = 0.009
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S +Y    P Y   +P Y+  +P ++  SP Y   +P ++  S SY   +  Y   +PSY
Sbjct: 1745 SPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSY 1804

Query: 343  DIVVPR 360
                PR
Sbjct: 1805 SPSSPR 1810



 Score = 37.7 bits (86), Expect = 0.012
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +P+Y
Sbjct: 1696 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNY 1755

Query: 343  DIVVP 357
                P
Sbjct: 1756 TPTSP 1760



 Score = 37.7 bits (86), Expect = 0.012
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +P+Y
Sbjct: 1689 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNY 1748

Query: 343  DIVVP 357
                P
Sbjct: 1749 SPTSP 1753



 Score = 37.7 bits (86), Expect = 0.012
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S +Y    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1633 SPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1692

Query: 343  DIVVP 357
                P
Sbjct: 1693 SPTSP 1697



 Score = 37.4 bits (85), Expect = 0.015
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S +Y   +  Y   +PSY
Sbjct: 1703 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSY 1762

Query: 343  DIVVP 357
                P
Sbjct: 1763 SPTSP 1767



 Score = 37.0 bits (84), Expect = 0.020
 Identities = 19/60 (31%), Positives = 31/60 (51%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y   +P ++  SP Y+  +P ++  S SY  ++ RY   +P+Y
Sbjct: 1759 SPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTY 1818



 Score = 37.0 bits (84), Expect = 0.020
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y   +P ++  SP Y+  +P +   S +Y   +  Y   +PSY
Sbjct: 1738 SPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSY 1797

Query: 343  DIVVP 357
                P
Sbjct: 1798 SPTSP 1802



 Score = 37.0 bits (84), Expect = 0.020
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S +Y   +  Y   +PSY
Sbjct: 1710 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSY 1769

Query: 343  DIVVP 357
                P
Sbjct: 1770 SPTSP 1774



 Score = 36.6 bits (83), Expect = 0.026
 Identities = 19/71 (26%), Positives = 32/71 (45%)
 Frame = +1

Query: 148  THISLSSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGI 327
            T+   S SY    P Y   +P Y   +P ++  SP Y   +P ++  S  Y   + +Y  
Sbjct: 1817 TYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSP 1876

Query: 328  VAPSYDIVVPR 360
             +P+Y    P+
Sbjct: 1877 TSPTYSPTTPK 1887



 Score = 36.6 bits (83), Expect = 0.026
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P +   SP Y+  +P ++  S +Y   +  Y   +PSY
Sbjct: 1731 SPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSY 1790

Query: 343  DIVVP 357
                P
Sbjct: 1791 SPTSP 1795



 Score = 36.6 bits (83), Expect = 0.026
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P +   S SY   +  Y   +P+Y
Sbjct: 1717 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNY 1776

Query: 343  DIVVP 357
                P
Sbjct: 1777 TPTSP 1781



 Score = 36.2 bits (82), Expect = 0.034
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y   +P ++  S SY   +  Y   +P+Y
Sbjct: 1724 SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNY 1783

Query: 343  DIVVP 357
                P
Sbjct: 1784 SPTSP 1788



 Score = 35.8 bits (81), Expect = 0.044
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    PRY   +P Y   +P ++  SP Y+  +P +   S SY  ++  Y   +P Y
Sbjct: 1801 SPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKY 1860

Query: 343  DIVVPR 360
                P+
Sbjct: 1861 SPTSPK 1866



 Score = 35.0 bits (79), Expect = 0.075
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S  Y    P+Y   +P Y+   P ++  SP Y+  +P++   S  Y   +  Y   +P Y
Sbjct: 1864 SPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY 1923

Query: 343  DIVVP 357
                P
Sbjct: 1924 SPTSP 1928



 Score = 35.0 bits (79), Expect = 0.075
 Identities = 16/66 (24%), Positives = 32/66 (48%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S  Y    P+Y   +P Y+  +P ++  +P Y+  +P ++  S  Y   + +Y   +P+Y
Sbjct: 1857 SPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTY 1916

Query: 343  DIVVPR 360
                P+
Sbjct: 1917 SPTSPK 1922



 Score = 34.7 bits (78), Expect = 0.098
 Identities = 18/66 (27%), Positives = 32/66 (48%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S +Y    P Y   +P Y+  +P ++  SP Y+  +P +   S +Y  ++  Y   +PSY
Sbjct: 1773 SPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSY 1832

Query: 343  DIVVPR 360
                P+
Sbjct: 1833 SPTSPK 1838



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 19/76 (25%), Positives = 32/76 (42%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S +Y    P+Y   +P Y+  +P +   SP Y+  +P ++  S  Y   +  Y   +P  
Sbjct: 1878 SPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKG 1937

Query: 343  DIVVPR*NCVVIPGYN 390
                P       PGY+
Sbjct: 1938 STYSP-----TSPGYS 1948



 Score = 33.1 bits (74), Expect = 0.29
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P +   SP Y   +P ++  S SY   + +Y   +PSY
Sbjct: 1787 SPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSY 1846



 Score = 33.1 bits (74), Expect = 0.29
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S  Y   +  Y   +PSY
Sbjct: 1766 SPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSY 1825



 Score = 33.1 bits (74), Expect = 0.29
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S +Y    P Y   +P Y+  +P +   SP Y+  +P ++  S SY   +  Y   +P Y
Sbjct: 1752 SPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRY 1811



 Score = 32.7 bits (73), Expect = 0.37
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S  Y    P Y   +P Y   +P ++  SP Y+  +P ++  S +Y     +Y   +P+Y
Sbjct: 1836 SPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTY 1895

Query: 343  DIVVP 357
                P
Sbjct: 1896 SPTSP 1900



 Score = 32.7 bits (73), Expect = 0.37
 Identities = 18/65 (27%), Positives = 28/65 (43%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P+Y   +P Y+  +P +   SP Y+  +P ++  S  Y   +  Y    P Y
Sbjct: 1829 SPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKY 1888

Query: 343  DIVVP 357
                P
Sbjct: 1889 SPTSP 1893



 Score = 32.7 bits (73), Expect = 0.37
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S +Y    P Y   +P Y+  +P ++  SP Y   +P +   S SY  ++  Y   +P Y
Sbjct: 1780 SPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKY 1839

Query: 343  DIVVP 357
                P
Sbjct: 1840 TPTSP 1844



 Score = 32.3 bits (72), Expect = 0.49
 Identities = 17/66 (25%), Positives = 30/66 (45%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  +  Y   +  Y   +P Y
Sbjct: 1843 SPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVY 1902

Query: 343  DIVVPR 360
                P+
Sbjct: 1903 TPTSPK 1908



 Score = 32.0 bits (71), Expect = 0.64
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S  Y    P+Y   +P Y+  +P ++  SP Y+   P ++  S +Y   +  Y   +P Y
Sbjct: 1850 SPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKY 1909

Query: 343  DIVVP 357
                P
Sbjct: 1910 SPTSP 1914



 Score = 31.6 bits (70), Expect = 0.83
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S +Y    P Y   +P Y+  +P +   SP Y+  +P +   S  Y   + +Y   +P Y
Sbjct: 1815 SPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKY 1874

Query: 343  DIVVP 357
                P
Sbjct: 1875 SPTSP 1879



 Score = 31.2 bits (69), Expect = 1.1
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = +1

Query: 187  PRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSYDIVVPR 360
            P Y   +P Y+  +P ++  SP Y   +P ++  S  Y   + +Y   +P Y    P+
Sbjct: 1816 PTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPK 1873



 Score = 31.2 bits (69), Expect = 1.1
 Identities = 18/66 (27%), Positives = 28/66 (42%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y   +P +   SP Y+  +P ++  S  Y   +  Y   +P Y
Sbjct: 1794 SPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEY 1853

Query: 343  DIVVPR 360
                P+
Sbjct: 1854 TPTSPK 1859



 Score = 28.1 bits (61), Expect = 9.2
 Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
 Frame = +1

Query: 148  THISLSSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATR--- 318
            T+   +  Y    P Y   +P Y   +P ++  SP Y+  +P ++  S +Y   + +   
Sbjct: 1880 TYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGST 1939

Query: 319  YGIVAPSYDIVVP 357
            Y   +P Y    P
Sbjct: 1940 YSPTSPGYSPTSP 1952

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>RPB1_ARATH (P18616) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1840

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 20/61 (32%), Positives = 32/61 (52%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  YG  +PSY
Sbjct: 1668 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSPSY 1727

Query: 343  D 345
            +
Sbjct: 1728 N 1728



 Score = 39.7 bits (91), Expect = 0.003
 Identities = 23/76 (30%), Positives = 35/76 (46%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1633 SPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1692

Query: 343  DIVVPR*NCVVIPGYN 390
                P       PGY+
Sbjct: 1693 SPTSPA-YSPTSPGYS 1707



 Score = 39.7 bits (91), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1619 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1678

Query: 343  DIVVP 357
                P
Sbjct: 1679 SPTSP 1683



 Score = 39.3 bits (90), Expect = 0.004
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1626 SPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1685

Query: 343  DIVVP 357
                P
Sbjct: 1686 SPTSP 1690



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S  Y    P Y   +P Y+  +P ++  SPGY+  +P ++  S SY   +  Y   +PSY
Sbjct: 1556 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1615

Query: 343  DIVVP 357
                P
Sbjct: 1616 SPTSP 1620



 Score = 38.1 bits (87), Expect = 0.009
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S +Y   +  Y   +PSY
Sbjct: 1612 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSY 1671

Query: 343  DIVVP 357
                P
Sbjct: 1672 SPTSP 1676



 Score = 38.1 bits (87), Expect = 0.009
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S +Y   +  Y   +PSY
Sbjct: 1605 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSY 1664

Query: 343  DIVVP 357
                P
Sbjct: 1665 SPTSP 1669



 Score = 37.7 bits (86), Expect = 0.012
 Identities = 20/68 (29%), Positives = 31/68 (45%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S  Y   +  Y   +PSY
Sbjct: 1661 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSY 1720

Query: 343  DIVVPR*N 366
                P  N
Sbjct: 1721 GPTSPSYN 1728



 Score = 37.0 bits (84), Expect = 0.020
 Identities = 19/70 (27%), Positives = 32/70 (45%)
 Frame = +1

Query: 148  THISLSSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGI 327
            T+   S  Y    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y  
Sbjct: 1579 TYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1638

Query: 328  VAPSYDIVVP 357
             +P+Y    P
Sbjct: 1639 TSPAYSPTSP 1648



 Score = 37.0 bits (84), Expect = 0.020
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S  Y    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1570 SPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1629

Query: 343  DIVVP 357
                P
Sbjct: 1630 SPTSP 1634



 Score = 37.0 bits (84), Expect = 0.020
 Identities = 21/74 (28%), Positives = 33/74 (44%)
 Frame = +1

Query: 136  GNQSTHISLSSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAAT 315
            G  +   S S  Y    P Y   +P Y+  +P ++  SPGY+  +P ++  S  Y   + 
Sbjct: 1533 GGMAFSPSSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSP 1592

Query: 316  RYGIVAPSYDIVVP 357
             Y   +PSY    P
Sbjct: 1593 AYSPTSPSYSPTSP 1606



 Score = 36.6 bits (83), Expect = 0.026
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S +Y   +  Y   +P+Y
Sbjct: 1598 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAY 1657

Query: 343  DIVVP 357
                P
Sbjct: 1658 SPTSP 1662



 Score = 36.6 bits (83), Expect = 0.026
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S +Y    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +P+Y
Sbjct: 1591 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAY 1650

Query: 343  DIVVP 357
                P
Sbjct: 1651 SPTSP 1655



 Score = 36.6 bits (83), Expect = 0.026
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S +Y    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1577 SPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1636

Query: 343  DIVVP 357
                P
Sbjct: 1637 SPTSP 1641



 Score = 36.2 bits (82), Expect = 0.034
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S +Y    P Y   +P Y+  +P ++  SP Y+  +P ++  S +Y   +  Y   +PSY
Sbjct: 1654 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSY 1713

Query: 343  DIVVP 357
                P
Sbjct: 1714 SPTSP 1718



 Score = 36.2 bits (82), Expect = 0.034
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S +Y    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +P Y
Sbjct: 1647 SPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGY 1706

Query: 343  DIVVP 357
                P
Sbjct: 1707 SPTSP 1711



 Score = 35.4 bits (80), Expect = 0.058
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S  Y    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1563 SPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1622

Query: 343  DIVVP 357
                P
Sbjct: 1623 SPTSP 1627



 Score = 32.7 bits (73), Expect = 0.37
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S  Y    P Y   +P Y+  +P ++  SP Y+  +P ++  S +Y   +  Y   +PSY
Sbjct: 1549 SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSY 1608

Query: 343  DIVVP 357
                P
Sbjct: 1609 SPTSP 1613



 Score = 32.3 bits (72), Expect = 0.49
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRY 321
            S SY    P Y   +P Y+  +P ++  SP Y+  +P +   S SY+  + +Y
Sbjct: 1682 SPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSPSYNPQSAKY 1734



 Score = 28.5 bits (62), Expect = 7.1
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = +1

Query: 145  STHISLSSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYG 324
            +  +S +S Y    P Y   +P Y+  +P ++  SP Y+  +P  +  S  Y  +A  Y 
Sbjct: 1744 NARLSPASPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYSSGASPDYSPSA-GYS 1802

Query: 325  IVAPSY 342
               P Y
Sbjct: 1803 PTLPGY 1808

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>RPB1_CRIGR (P11414) DNA-directed RNA polymerase II largest subunit (EC|
           2.7.7.6) (RPB1) (Fragment)
          Length = 467

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = +1

Query: 127 GGRGNQSTHISLSS-SYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYD 303
           GG   QS   S +S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY 
Sbjct: 103 GGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 162

Query: 304 IAATRYGIVAPSYDIVVP 357
             +  Y   +PSY    P
Sbjct: 163 PTSPSYSPTSPSYSPTSP 180



 Score = 39.3 bits (90), Expect = 0.004
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 123 SPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 182

Query: 343 DIVVP 357
               P
Sbjct: 183 SPTSP 187



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 179 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 238

Query: 343 DIVVP 357
               P
Sbjct: 239 SPTSP 243



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 172 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 231

Query: 343 DIVVP 357
               P
Sbjct: 232 SPTSP 236



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 165 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 224

Query: 343 DIVVP 357
               P
Sbjct: 225 SPTSP 229



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 158 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 217

Query: 343 DIVVP 357
               P
Sbjct: 218 SPTSP 222



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 151 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 210

Query: 343 DIVVP 357
               P
Sbjct: 211 SPTSP 215



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 144 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 203

Query: 343 DIVVP 357
               P
Sbjct: 204 SPTSP 208



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 137 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 196

Query: 343 DIVVP 357
               P
Sbjct: 197 SPTSP 201



 Score = 38.1 bits (87), Expect = 0.009
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S +Y    P Y   +P Y+  +P ++  SP Y   +P ++  S SY   +  Y   +PSY
Sbjct: 242 SPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSY 301

Query: 343 DIVVPR 360
               PR
Sbjct: 302 SPSSPR 307



 Score = 37.7 bits (86), Expect = 0.012
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +P+Y
Sbjct: 193 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNY 252

Query: 343 DIVVP 357
               P
Sbjct: 253 TPTSP 257



 Score = 37.7 bits (86), Expect = 0.012
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +P+Y
Sbjct: 186 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNY 245

Query: 343 DIVVP 357
               P
Sbjct: 246 SPTSP 250



 Score = 37.7 bits (86), Expect = 0.012
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S +Y    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 130 SPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 189

Query: 343 DIVVP 357
               P
Sbjct: 190 SPTSP 194



 Score = 37.4 bits (85), Expect = 0.015
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S +Y   +  Y   +PSY
Sbjct: 200 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSY 259

Query: 343 DIVVP 357
               P
Sbjct: 260 SPTSP 264



 Score = 37.0 bits (84), Expect = 0.020
 Identities = 19/60 (31%), Positives = 31/60 (51%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y   +P ++  SP Y+  +P ++  S SY  ++ RY   +P+Y
Sbjct: 256 SPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTY 315



 Score = 37.0 bits (84), Expect = 0.020
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y   +P ++  SP Y+  +P +   S +Y   +  Y   +PSY
Sbjct: 235 SPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSY 294

Query: 343 DIVVP 357
               P
Sbjct: 295 SPTSP 299



 Score = 37.0 bits (84), Expect = 0.020
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S +Y   +  Y   +PSY
Sbjct: 207 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSY 266

Query: 343 DIVVP 357
               P
Sbjct: 267 SPTSP 271



 Score = 36.6 bits (83), Expect = 0.026
 Identities = 19/71 (26%), Positives = 32/71 (45%)
 Frame = +1

Query: 148 THISLSSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGI 327
           T+   S SY    P Y   +P Y   +P ++  SP Y   +P ++  S  Y   + +Y  
Sbjct: 314 TYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSP 373

Query: 328 VAPSYDIVVPR 360
            +P+Y    P+
Sbjct: 374 TSPTYSPTTPK 384



 Score = 36.6 bits (83), Expect = 0.026
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P +   SP Y+  +P ++  S +Y   +  Y   +PSY
Sbjct: 228 SPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSY 287

Query: 343 DIVVP 357
               P
Sbjct: 288 SPTSP 292



 Score = 36.6 bits (83), Expect = 0.026
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P ++  SP Y+  +P +   S SY   +  Y   +P+Y
Sbjct: 214 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNY 273

Query: 343 DIVVP 357
               P
Sbjct: 274 TPTSP 278



 Score = 36.2 bits (82), Expect = 0.034
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P ++  SP Y   +P ++  S SY   +  Y   +P+Y
Sbjct: 221 SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNY 280

Query: 343 DIVVP 357
               P
Sbjct: 281 SPTSP 285



 Score = 35.8 bits (81), Expect = 0.044
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    PRY   +P Y   +P ++  SP Y+  +P +   S SY  ++  Y   +P Y
Sbjct: 298 SPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKY 357

Query: 343 DIVVPR 360
               P+
Sbjct: 358 SPTSPK 363



 Score = 35.0 bits (79), Expect = 0.075
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S  Y    P+Y   +P Y+   P ++  SP Y+  +P++   S  Y   +  Y   +P Y
Sbjct: 361 SPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY 420

Query: 343 DIVVP 357
               P
Sbjct: 421 SPTSP 425



 Score = 35.0 bits (79), Expect = 0.075
 Identities = 16/66 (24%), Positives = 32/66 (48%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S  Y    P+Y   +P Y+  +P ++  +P Y+  +P ++  S  Y   + +Y   +P+Y
Sbjct: 354 SPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTY 413

Query: 343 DIVVPR 360
               P+
Sbjct: 414 SPTSPK 419



 Score = 34.7 bits (78), Expect = 0.098
 Identities = 18/66 (27%), Positives = 32/66 (48%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S +Y    P Y   +P Y+  +P ++  SP Y+  +P +   S +Y  ++  Y   +PSY
Sbjct: 270 SPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSY 329

Query: 343 DIVVPR 360
               P+
Sbjct: 330 SPTSPK 335



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 19/76 (25%), Positives = 32/76 (42%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S +Y    P+Y   +P Y+  +P +   SP Y+  +P ++  S  Y   +  Y   +P  
Sbjct: 375 SPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKG 434

Query: 343 DIVVPR*NCVVIPGYN 390
               P       PGY+
Sbjct: 435 STYSP-----TSPGYS 445



 Score = 33.1 bits (74), Expect = 0.29
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P +   SP Y   +P ++  S SY   + +Y   +PSY
Sbjct: 284 SPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSY 343



 Score = 33.1 bits (74), Expect = 0.29
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S  Y   +  Y   +PSY
Sbjct: 263 SPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSY 322



 Score = 33.1 bits (74), Expect = 0.29
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S +Y    P Y   +P Y+  +P +   SP Y+  +P ++  S SY   +  Y   +P Y
Sbjct: 249 SPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRY 308



 Score = 32.7 bits (73), Expect = 0.37
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S  Y    P Y   +P Y   +P ++  SP Y+  +P ++  S +Y     +Y   +P+Y
Sbjct: 333 SPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTY 392

Query: 343 DIVVP 357
               P
Sbjct: 393 SPTSP 397



 Score = 32.7 bits (73), Expect = 0.37
 Identities = 18/65 (27%), Positives = 28/65 (43%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P+Y   +P Y+  +P +   SP Y+  +P ++  S  Y   +  Y    P Y
Sbjct: 326 SPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKY 385

Query: 343 DIVVP 357
               P
Sbjct: 386 SPTSP 390



 Score = 32.7 bits (73), Expect = 0.37
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S +Y    P Y   +P Y+  +P ++  SP Y   +P +   S SY  ++  Y   +P Y
Sbjct: 277 SPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKY 336

Query: 343 DIVVP 357
               P
Sbjct: 337 TPTSP 341



 Score = 32.3 bits (72), Expect = 0.49
 Identities = 17/66 (25%), Positives = 30/66 (45%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  +  Y   +  Y   +P Y
Sbjct: 340 SPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVY 399

Query: 343 DIVVPR 360
               P+
Sbjct: 400 TPTSPK 405



 Score = 32.0 bits (71), Expect = 0.64
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S  Y    P+Y   +P Y+  +P ++  SP Y+   P ++  S +Y   +  Y   +P Y
Sbjct: 347 SPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKY 406

Query: 343 DIVVP 357
               P
Sbjct: 407 SPTSP 411



 Score = 31.6 bits (70), Expect = 0.83
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S +Y    P Y   +P Y+  +P +   SP Y+  +P +   S  Y   + +Y   +P Y
Sbjct: 312 SPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKY 371

Query: 343 DIVVP 357
               P
Sbjct: 372 SPTSP 376



 Score = 31.2 bits (69), Expect = 1.1
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = +1

Query: 187 PRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSYDIVVPR 360
           P Y   +P Y+  +P ++  SP Y   +P ++  S  Y   + +Y   +P Y    P+
Sbjct: 313 PTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPK 370



 Score = 31.2 bits (69), Expect = 1.1
 Identities = 18/66 (27%), Positives = 28/66 (42%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y   +P +   SP Y+  +P ++  S  Y   +  Y   +P Y
Sbjct: 291 SPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEY 350

Query: 343 DIVVPR 360
               P+
Sbjct: 351 TPTSPK 356



 Score = 28.1 bits (61), Expect = 9.2
 Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
 Frame = +1

Query: 148 THISLSSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATR--- 318
           T+   +  Y    P Y   +P Y   +P ++  SP Y+  +P ++  S +Y   + +   
Sbjct: 377 TYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGST 436

Query: 319 YGIVAPSYDIVVP 357
           Y   +P Y    P
Sbjct: 437 YSPTSPGYSPTSP 449

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>RPB1_CAEEL (P16356) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1852

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 21/67 (31%), Positives = 34/67 (50%)
 Frame = +1

Query: 160  LSSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPS 339
            +S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY  ++  Y   +PS
Sbjct: 1608 VSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPS 1667

Query: 340  YDIVVPR 360
            Y    PR
Sbjct: 1668 YSPSSPR 1674



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 33/65 (50%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY  ++ RY   +P+Y
Sbjct: 1623 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRYSPTSPTY 1682

Query: 343  DIVVP 357
                P
Sbjct: 1683 SPTSP 1687



 Score = 35.8 bits (81), Expect = 0.044
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY  ++  Y   +P Y
Sbjct: 1616 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRY 1675

Query: 343  DIVVP 357
                P
Sbjct: 1676 SPTSP 1680



 Score = 34.3 bits (77), Expect = 0.13
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S +Y   +  Y   +PSY
Sbjct: 1651 SPSYSPSSPSYSPSSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSY 1710

Query: 343  D 345
            +
Sbjct: 1711 E 1711



 Score = 34.3 bits (77), Expect = 0.13
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +1

Query: 187  PRYDMVAP*YNIVAPCHNIVSP--GYNIVAPIHNMVSLSYDIAATRYGIVAPSYDIVVP 357
            P++ M +P Y+  +P ++  SP  G + V+P ++  S SY   +  Y   +PSY    P
Sbjct: 1580 PQFSMTSPHYSPTSPSYSPTSPAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1638



 Score = 33.9 bits (76), Expect = 0.17
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S +Y   +  Y   +P+Y
Sbjct: 1644 SPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTY 1703

Query: 343  DIVVP 357
                P
Sbjct: 1704 SPTSP 1708



 Score = 33.9 bits (76), Expect = 0.17
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S +Y   +  Y   +P+Y
Sbjct: 1637 SPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTY 1696

Query: 343  DIVVP 357
                P
Sbjct: 1697 SPTSP 1701



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S  Y   +  Y   +P+Y
Sbjct: 1630 SPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRYSPTSPTYSPTSPTY 1689

Query: 343  DIVVP 357
                P
Sbjct: 1690 SPTSP 1694



 Score = 32.7 bits (73), Expect = 0.37
 Identities = 20/65 (30%), Positives = 29/65 (44%)
 Frame = +1

Query: 148  THISLSSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGI 327
            T+   S SY    P+Y   +P Y+  +P +   SP YN  +P     S  Y   +  Y  
Sbjct: 1729 TYSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSP-RGFSSPQYSPTSPTYSP 1787

Query: 328  VAPSY 342
             +PSY
Sbjct: 1788 TSPSY 1792



 Score = 30.8 bits (68), Expect = 1.4
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = +1

Query: 193  YDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSYDIVVPR 360
            Y   +P Y+  +P ++  SP Y+  +P ++  S  Y  ++  Y   +P+Y+   PR
Sbjct: 1716 YSPSSPKYSPSSPTYSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSPR 1771



 Score = 30.4 bits (67), Expect = 1.9
 Identities = 24/88 (27%), Positives = 37/88 (42%)
 Frame = +1

Query: 94   YIELGQGHELLGGRGNQSTHISLSSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAP 273
            Y      +E  GG    S   S SS      P Y   +P Y+  +P ++  SP Y+  +P
Sbjct: 1703 YSPTSPSYESGGGYSPSSPKYSPSS------PTYSPTSPSYSPTSPQYSPTSPQYSPSSP 1756

Query: 274  IHNMVSLSYDIAATRYGIVAPSYDIVVP 357
             +   S +Y+  + R G  +P Y    P
Sbjct: 1757 TYTPSSPTYNPTSPR-GFSSPQYSPTSP 1783

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>RPB1_DICDI (P35084) DNA-directed RNA polymerase II largest subunit (EC|
           2.7.7.6) (Fragment)
          Length = 902

 Score = 39.7 bits (91), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 739 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPFYSPTSPSYSPTSPSYSPTSPSY 798

Query: 343 DIVVP 357
               P
Sbjct: 799 SPTSP 803



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 795 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 854

Query: 343 DIVVP 357
               P
Sbjct: 855 SPTSP 859



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 788 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 847

Query: 343 DIVVP 357
               P
Sbjct: 848 SPTSP 852



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 781 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 840

Query: 343 DIVVP 357
               P
Sbjct: 841 SPTSP 845



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 760 SPSYSPTSPSYSPTSPFYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 819

Query: 343 DIVVP 357
               P
Sbjct: 820 SPTSP 824



 Score = 38.5 bits (88), Expect = 0.007
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 753 SPSYSPTSPSYSPTSPSYSPTSPFYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 812

Query: 343 DIVVP 357
               P
Sbjct: 813 SPTSP 817



 Score = 38.1 bits (87), Expect = 0.009
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 802 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 861



 Score = 38.1 bits (87), Expect = 0.009
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 767 SPSYSPTSPFYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 826

Query: 343 DIVVP 357
               P
Sbjct: 827 SPTSP 831



 Score = 38.1 bits (87), Expect = 0.009
 Identities = 20/74 (27%), Positives = 34/74 (45%)
 Frame = +1

Query: 136 GNQSTHISLSSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAAT 315
           G+   +   S +Y    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   + 
Sbjct: 716 GSSYQYFPQSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 775

Query: 316 RYGIVAPSYDIVVP 357
            Y   +PSY    P
Sbjct: 776 FYSPTSPSYSPTSP 789



 Score = 37.7 bits (86), Expect = 0.012
 Identities = 19/60 (31%), Positives = 31/60 (51%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY  ++  Y   +PSY
Sbjct: 816 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSY 875



 Score = 37.7 bits (86), Expect = 0.012
 Identities = 20/70 (28%), Positives = 32/70 (45%)
 Frame = +1

Query: 148 THISLSSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGI 327
           T+   S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S  Y   +  Y  
Sbjct: 727 TYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPFYSPTSPSYSP 786

Query: 328 VAPSYDIVVP 357
            +PSY    P
Sbjct: 787 TSPSYSPTSP 796



 Score = 37.4 bits (85), Expect = 0.015
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 809 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSY 868



 Score = 37.0 bits (84), Expect = 0.020
 Identities = 19/60 (31%), Positives = 31/60 (51%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY  ++  Y   +PSY
Sbjct: 823  SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPSY 882



 Score = 36.2 bits (82), Expect = 0.034
 Identities = 19/73 (26%), Positives = 32/73 (43%)
 Frame = +1

Query: 139 NQSTHISLSSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATR 318
           N +     S  Y+   P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  
Sbjct: 710 NANKSYGSSYQYFPQSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 769

Query: 319 YGIVAPSYDIVVP 357
           Y   +P Y    P
Sbjct: 770 YSPTSPFYSPTSP 782



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 17/60 (28%), Positives = 31/60 (51%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY  ++  Y   +P++
Sbjct: 830  SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPSYSPSSPTF 889

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>RPB1_ENCCU (Q8SSC4) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RNA polymerase II subunit 1)
          Length = 1599

 Score = 39.3 bits (90), Expect = 0.004
 Identities = 19/62 (30%), Positives = 31/62 (50%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1512 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1571

Query: 343  DI 348
             +
Sbjct: 1572 SV 1573



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1505 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1564

Query: 343  DIVVP 357
                P
Sbjct: 1565 SPTSP 1569



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1498 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1557

Query: 343  DIVVP 357
                P
Sbjct: 1558 SPTSP 1562



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1491 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1550

Query: 343  DIVVP 357
                P
Sbjct: 1551 SPTSP 1555



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1484 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1543

Query: 343  DIVVP 357
                P
Sbjct: 1544 SPTSP 1548



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1477 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1536

Query: 343  DIVVP 357
                P
Sbjct: 1537 SPTSP 1541



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1470 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1529

Query: 343  DIVVP 357
                P
Sbjct: 1530 SPTSP 1534



 Score = 34.3 bits (77), Expect = 0.13
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y +   S+
Sbjct: 1519 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSVSMSSF 1578



 Score = 33.9 bits (76), Expect = 0.17
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = +1

Query: 136  GNQS-THISLSSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAA 312
            GN S TH+ ++ S   +  R    +P Y+  +P ++  SP Y+  +P ++  S SY   +
Sbjct: 1447 GNWSPTHLEMAYSRD-LGERLSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1505

Query: 313  TRYGIVAPSYDIVVP 357
              Y   +PSY    P
Sbjct: 1506 PSYSPTSPSYSPTSP 1520

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>RPB1_YEAST (P04050) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RNA polymerase II subunit 1) (B220)
          Length = 1733

 Score = 39.3 bits (90), Expect = 0.004
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1644 SPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSY 1703

Query: 343  DIVVP 357
                P
Sbjct: 1704 SPTSP 1708



 Score = 39.3 bits (90), Expect = 0.004
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1623 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1682

Query: 343  DIVVP 357
                P
Sbjct: 1683 SPTSP 1687



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1630 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1689

Query: 343  DIVVP 357
                P
Sbjct: 1690 SPTSP 1694



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1609 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSY 1668

Query: 343  DIVVP 357
                P
Sbjct: 1669 SPTSP 1673



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1595 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1654

Query: 343  DIVVP 357
                P
Sbjct: 1655 SPTSP 1659



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1588 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1647

Query: 343  DIVVP 357
                P
Sbjct: 1648 SPTSP 1652



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1581 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1640

Query: 343  DIVVP 357
                P
Sbjct: 1641 SPTSP 1645



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1574 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1633

Query: 343  DIVVP 357
                P
Sbjct: 1634 SPTSP 1638



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1567 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1626

Query: 343  DIVVP 357
                P
Sbjct: 1627 SPTSP 1631



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1560 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1619

Query: 343  DIVVP 357
                P
Sbjct: 1620 SPTSP 1624



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/70 (28%), Positives = 33/70 (47%)
 Frame = +1

Query: 148  THISLSSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGI 327
            T+   S +Y    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y  
Sbjct: 1548 TYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1607

Query: 328  VAPSYDIVVP 357
             +PSY    P
Sbjct: 1608 TSPSYSPTSP 1617



 Score = 38.5 bits (88), Expect = 0.007
 Identities = 22/76 (28%), Positives = 35/76 (46%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +P+Y
Sbjct: 1637 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNY 1696

Query: 343  DIVVPR*NCVVIPGYN 390
                P       PGY+
Sbjct: 1697 SPTSPS-YSPTSPGYS 1711



 Score = 37.7 bits (86), Expect = 0.012
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S +Y   +  Y   +PSY
Sbjct: 1616 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSY 1675

Query: 343  DIVVP 357
                P
Sbjct: 1676 SPTSP 1680



 Score = 37.7 bits (86), Expect = 0.012
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +P+Y
Sbjct: 1602 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY 1661

Query: 343  DIVVP 357
                P
Sbjct: 1662 SPTSP 1666



 Score = 37.7 bits (86), Expect = 0.012
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S +Y    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1546 SPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1605

Query: 343  DIVVP 357
                P
Sbjct: 1606 SPTSP 1610



 Score = 35.0 bits (79), Expect = 0.075
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +1

Query: 187  PRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSYDIVVP 357
            P +   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY    P
Sbjct: 1540 PGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1596



 Score = 33.9 bits (76), Expect = 0.17
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S +Y    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +P+Y
Sbjct: 1658 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAY 1717



 Score = 33.1 bits (74), Expect = 0.29
 Identities = 15/57 (26%), Positives = 29/57 (50%)
 Frame = +1

Query: 187  PRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSYDIVVP 357
            P + + +P ++  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY    P
Sbjct: 1533 PGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1589



 Score = 29.6 bits (65), Expect = 3.2
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +1

Query: 205  AP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSYDIVVP 357
            +P + + +P  +  SP Y+  +P ++  S SY   +  Y   +PSY    P
Sbjct: 1532 SPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1582



 Score = 28.5 bits (62), Expect = 7.1
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHN 282
            S SY    P Y   +P Y+  +P ++  SPGY+  +P ++
Sbjct: 1679 SPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAYS 1718

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>RPB1_ASHGO (Q75A34) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RNA polymerase II subunit 1)
          Length = 1745

 Score = 39.3 bits (90), Expect = 0.004
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1654 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1713

Query: 343  DIVVPR 360
                P+
Sbjct: 1714 SPTSPQ 1719



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1647 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1706

Query: 343  DIVVP 357
                P
Sbjct: 1707 SPTSP 1711



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1640 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1699

Query: 343  DIVVP 357
                P
Sbjct: 1700 SPTSP 1704



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1633 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1692

Query: 343  DIVVP 357
                P
Sbjct: 1693 SPTSP 1697



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1626 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1685

Query: 343  DIVVP 357
                P
Sbjct: 1686 SPTSP 1690



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1619 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1678

Query: 343  DIVVP 357
                P
Sbjct: 1679 SPTSP 1683



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1612 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1671

Query: 343  DIVVP 357
                P
Sbjct: 1672 SPTSP 1676



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1605 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1664

Query: 343  DIVVP 357
                P
Sbjct: 1665 SPTSP 1669



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1598 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1657

Query: 343  DIVVP 357
                P
Sbjct: 1658 SPTSP 1662



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1591 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1650

Query: 343  DIVVP 357
                P
Sbjct: 1651 SPTSP 1655



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1584 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1643

Query: 343  DIVVP 357
                P
Sbjct: 1644 SPTSP 1648



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1577 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1636

Query: 343  DIVVP 357
                P
Sbjct: 1637 SPTSP 1641



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1570 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1629

Query: 343  DIVVP 357
                P
Sbjct: 1630 SPTSP 1634



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1563 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1622

Query: 343  DIVVP 357
                P
Sbjct: 1623 SPTSP 1627



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1556 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1615

Query: 343  DIVVP 357
                P
Sbjct: 1616 SPTSP 1620



 Score = 37.7 bits (86), Expect = 0.012
 Identities = 19/60 (31%), Positives = 31/60 (51%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   + +Y   +PSY
Sbjct: 1668 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPQYSPRSPSY 1727



 Score = 37.7 bits (86), Expect = 0.012
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S +Y    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1549 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1608

Query: 343  DIVVP 357
                P
Sbjct: 1609 SPTSP 1613



 Score = 36.6 bits (83), Expect = 0.026
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +P Y
Sbjct: 1661 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPQY 1720



 Score = 34.7 bits (78), Expect = 0.098
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +1

Query: 187  PRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSYDIVVP 357
            P +   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY    P
Sbjct: 1543 PGFSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1599



 Score = 33.1 bits (74), Expect = 0.29
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +1

Query: 196  DMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSYDIVVP 357
            D+ +P ++  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY    P
Sbjct: 1539 DVSSPGFSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1592

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>RPB1_DROME (P04052) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1887

 Score = 37.4 bits (85), Expect = 0.015
 Identities = 21/73 (28%), Positives = 34/73 (46%)
 Frame = +1

Query: 139  NQSTHISLSSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATR 318
            + S +   S SY    P Y   +P Y+  +PC++  SP Y+  +P +  V+ SY   +  
Sbjct: 1674 SSSNYSPNSPSYSPTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPVTPSYSPTSPN 1733

Query: 319  YGIVAPSYDIVVP 357
            Y   +P Y    P
Sbjct: 1734 YS-ASPQYSPASP 1745



 Score = 35.4 bits (80), Expect = 0.058
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y  V P Y+  +P ++  SP Y+  +P ++   + Y   +  Y   +PSY
Sbjct: 1710 SPSYSPTSPNYTPVTPSYSPTSPNYS-ASPQYSPASPAYSQTGVKYSPTSPTYSPPSPSY 1768

Query: 343  D 345
            D
Sbjct: 1769 D 1769



 Score = 35.0 bits (79), Expect = 0.075
 Identities = 21/74 (28%), Positives = 34/74 (45%)
 Frame = +1

Query: 136  GNQSTHISLSSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAAT 315
            G+ S   S  ++Y      Y   +P Y+  +P ++  SP Y+  +P ++  S SY   + 
Sbjct: 1659 GSGSNIYSPGNAYSPSSSNYSPNSPSYSPTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSP 1718

Query: 316  RYGIVAPSYDIVVP 357
             Y  V PSY    P
Sbjct: 1719 NYTPVTPSYSPTSP 1732

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>HSPC_ELECI (P83183) Cysteine-rich protamine|
          Length = 84

 Score = 35.4 bits (80), Expect = 0.058
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
 Frame = -1

Query: 349 QCRNW-EQQCRIW*RQCRN*EKPCCVWEQQCCIREKQC---CDREQQCCIRGQPCR 194
           +CR+  +++CR   R+C    K CC    +CC R ++C   C R++  C + +P R
Sbjct: 15  RCRSRSKKRCRRCRRRCSRIVKKCCRRRSKCCRRRRRCPCPCPRKKLRCCKRRPKR 70

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>GRN_CAVPO (P28797) Granulins precursor (Proepithelin) (PEPI) [Contains:|
           Acrogranin; Granulin-1; Granulin-2; Granulin-3;
           Granulin-4; Granulin-5; Granulin-6; Granulin-7]
           (Fragment)
          Length = 591

 Score = 33.1 bits (74), Expect = 0.29
 Identities = 23/63 (36%), Positives = 28/63 (44%)
 Frame = +3

Query: 195 RHGCPLIQHCCSLSQHCFSRIQHCCSHTQHGFSQLRHCRYQIRHCCSQLRHCRSQIELCC 374
           RH C   Q CC  S+  ++    CC      F Q   C+ Q RHCC    HC SQ   C 
Sbjct: 521 RHFCHDEQTCCRDSRGGWA----CCP-----FHQGVCCKDQ-RHCCPAGFHCESQGTRCV 570

Query: 375 HSR 383
           H +
Sbjct: 571 HKK 573

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>AGRN_RAT (P25304) Agrin precursor|
          Length = 1959

 Score = 31.6 bits (70), Expect = 0.83
 Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = +3

Query: 204 CPLIQHCCSLSQHCFSRIQHCCSHTQHGFSQLRH-CRYQIR 323
           C L+ H C+  +H F +    C   Q   S L H CR   R
Sbjct: 191 CQLLSHACASQEHIFKKFNGPCDPCQGSMSDLNHICRVNPR 231

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>MCSP_MOUSE (P15265) Sperm mitochondrial-associated cysteine-rich protein|
          Length = 143

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 286 PCCVWEQQCCIREKQCCDREQQCCIRGQPC 197
           PCC  +  CC ++  CC +   CC +   C
Sbjct: 73  PCCPQKCSCCPKKCTCCPQPPPCCAQPTCC 102



 Score = 28.9 bits (63), Expect = 5.4
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 280 CVWEQQCCIREKQCCDREQQCCIRGQPC 197
           C  +  CC ++  CC ++  CC +  PC
Sbjct: 68  CPLKPPCCPQKCSCCPKKCTCCPQPPPC 95



 Score = 28.9 bits (63), Expect = 5.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 289 KPCCVWEQQCCIREKQCCDREQQCCIRGQPC 197
           KPCC  +  CC  +  CC  +  CC   +PC
Sbjct: 24  KPCCPQKPPCC-PKSPCCPPKSPCC-PPKPC 52



 Score = 28.9 bits (63), Expect = 5.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 289 KPCCVWEQQCCIREKQCCDREQQCCIRGQPC 197
           KPCC   + CC ++  CC +   CC    PC
Sbjct: 18  KPCCP-PKPCCPQKPPCCPK-SPCCPPKSPC 46

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>MCSP_RAT (Q64298) Sperm mitochondrial-associated cysteine-rich protein|
          Length = 145

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 289 KPCCVWEQQCCIREKQCCDREQQCCIRGQPC 197
           KPCC   + CC+++  CC +   CC    PC
Sbjct: 19  KPCCP-PKPCCLQKSPCCPK-SPCCPPKSPC 47



 Score = 30.4 bits (67), Expect = 1.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 289 KPCCVWEQQCCIREKQCCDREQQCCIRGQPC 197
           KPCC  +  CC ++  CC  +  CC++   C
Sbjct: 76  KPCCPTKCTCCPKKCTCCP-QPTCCVQPTCC 105



 Score = 30.0 bits (66), Expect = 2.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 289 KPCCVWEQQCCIREKQCCDREQQCC 215
           KPCC+ +  CC  +  CC  +  CC
Sbjct: 25  KPCCLQKSPCC-PKSPCCPPKSPCC 48

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>VTS1_DEBHA (Q6BSL1) Protein VTS1|
          Length = 577

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = -1

Query: 253 REKQCCDREQQCCIRGQPCRIWEQQSSNWR---IVICEWIDSLFPRGAHVLVQVQCSLQS 83
           +++Q  DR+QQ            QQ++N+    IV C WI++L PR    ++   C+   
Sbjct: 175 QQQQTIDRQQQ------------QQATNFYLDLIVFCNWIETLNPRDNITMIDYLCNNLP 222

Query: 82  LD 77
           LD
Sbjct: 223 LD 224

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>PSKR_ARATH (Q9ZVR7) Putative phytosulfokine receptor precursor (EC 2.7.11.1)|
           (Phytosulfokine LRR receptor kinase)
          Length = 1008

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = -2

Query: 153 VSGLIPSSPEELMSLSKFNVVYNRLMSPI 67
           +SG IP S ++L  LSKF+V YN L   I
Sbjct: 583 LSGSIPVSLQQLSFLSKFSVAYNNLSGVI 611

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>AGI2_WHEAT (P02876) Agglutinin isolectin 2 precursor (WGA2) (Isolectin D)|
          Length = 213

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 18/58 (31%), Positives = 21/58 (36%), Gaps = 8/58 (13%)
 Frame = +3

Query: 222 CCSLSQHCFSRIQHCCSHTQHGF--------SQLRHCRYQIRHCCSQLRHCRSQIELC 371
           CCS   +C     +C    Q+G         SQ         HCCSQ  HC    E C
Sbjct: 44  CCSQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGATCPNNHCCSQYGHCGFGAEYC 101



 Score = 28.1 bits (61), Expect = 9.2
 Identities = 21/69 (30%), Positives = 25/69 (36%), Gaps = 13/69 (18%)
 Frame = +3

Query: 204 CPLIQHCCSLSQHCFSRIQHCCSHTQHGFSQLRHCRYQIR-------------HCCSQLR 344
           CP   HCCS   HC    ++C +  Q G      CR  I+              CCSQ  
Sbjct: 82  CPN-NHCCSQYGHCGFGAEYCGAGCQGG-----PCRADIKCGSQSGGKLCPNNLCCSQWG 135

Query: 345 HCRSQIELC 371
            C    E C
Sbjct: 136 FCGLGSEFC 144

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>AF2_GRASP (P61409) Alpha mechanotoxin (Peptide GsAF II)|
          Length = 31

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 259 CIREKQCCDREQQCCIRGQPCRIWEQQSSNW 167
           C +    CD E++CC  G  CR+W ++   W
Sbjct: 2   CQKWMWTCDEERKCC-EGLVCRLWCKKKIEW 31

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>ZFP90_RAT (Q4V8A8) Zinc finger protein 90 (Zfp-90)|
          Length = 633

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 10/89 (11%)
 Frame = +3

Query: 129 GKRESIHSHITILQLLLCCSQIRHGCPLIQHC----------CSLSQHCFSRIQHCCSHT 278
           G+ E+ H+     Q  LC    +    L+QH           C+L   C    +H  S T
Sbjct: 295 GQHENAHTGEKPYQCSLCGKAFQRSSSLVQHQRIHTGEKPYRCNL---CGRSFRHSTSLT 351

Query: 279 QHGFSQLRHCRYQIRHCCSQLRHCRSQIE 365
           QH  +      +Q + C      C S ++
Sbjct: 352 QHEVTHSGEKPFQCKECGKAFSRCSSLVQ 380

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>AGI3_WHEAT (P10969) Agglutinin isolectin 3 precursor (WGA3) (Fragment)|
          Length = 186

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 13/69 (18%)
 Frame = +3

Query: 204 CPLIQHCCSLSQHCFSRIQHCCSHTQHGFSQLRHCRYQIR-------------HCCSQLR 344
           CP   HCCS   HC    ++C +  Q G      CR  I+              CCSQ  
Sbjct: 55  CPN-NHCCSQYGHCGFGAEYCGAGCQGG-----PCRADIKCGSQAGGKLCPNNLCCSQWG 108

Query: 345 HCRSQIELC 371
           +C    E C
Sbjct: 109 YCGLGSEFC 117



 Score = 29.3 bits (64), Expect = 4.1
 Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 8/58 (13%)
 Frame = +3

Query: 222 CCSLSQHCFSRIQHCCSHTQHGFSQL-RHCRYQI-------RHCCSQLRHCRSQIELC 371
           CCS   +C     +C    Q+G     + C  Q         HCCSQ  HC    E C
Sbjct: 17  CCSQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGKTCPNNHCCSQYGHCGFGAEYC 74

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>GRN_HUMAN (P28799) Granulins precursor (Proepithelin) (PEPI) [Contains:|
           Acrogranin; Paragranulin; Granulin-1 (Granulin G);
           Granulin-2 (Granulin F); Granulin-3 (Granulin B);
           Granulin-4 (Granulin A); Granulin-5 (Granulin C);
           Granulin-6 (Granulin D); Granul
          Length = 593

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
 Frame = -1

Query: 283 CCVWEQQ-CCIREKQCCDREQQCCIRGQPC 197
           CC + Q  CC   + CC    +C  RG  C
Sbjct: 543 CCPYRQGVCCADRRHCCPAGFRCAARGTKC 572



 Score = 28.1 bits (61), Expect = 9.2
 Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
 Frame = -1

Query: 271 EQQCC-IREKQCCDREQQCCIRGQPC 197
           E  CC I E  CC   Q CC +G  C
Sbjct: 385 EWGCCPIPEAVCCSDHQHCCPQGYTC 410

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>CCD70_MACFA (Q4R9C9) Coiled-coil domain-containing protein 70 precursor|
          Length = 232

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 11/79 (13%), Positives = 36/79 (45%)
 Frame = -1

Query: 373 QHNSIWERQCRNWEQQCRIW*RQCRN*EKPCCVWEQQCCIREKQCCDREQQCCIRGQPCR 194
           ++   W+     W++   +W +     ++   +WE++  +  ++    E++  +      
Sbjct: 124 KYRIFWKDDKAFWKEDNALWEKDRNLLQEDKALWEEEKALWVEERALLEEEKALWEDKTS 183

Query: 193 IWEQQSSNWRIVICEWIDS 137
           +WE++++ W      W++S
Sbjct: 184 LWEEENALWEEERAFWVES 202

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>ZFP90_MOUSE (Q61967) Zinc finger protein 90 (Zfp-90) (Zinc finger protein NK10)|
          Length = 636

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 10/89 (11%)
 Frame = +3

Query: 129 GKRESIHSHITILQLLLCCSQIRHGCPLIQHC----------CSLSQHCFSRIQHCCSHT 278
           G+ E+ H+     Q  LC    +    L+QH           C+L   C    +H  S T
Sbjct: 294 GQHENAHTGEKPYQCSLCGKAFQRSSSLVQHQRIHTGEKPYRCNL---CGRSFRHSTSLT 350

Query: 279 QHGFSQLRHCRYQIRHCCSQLRHCRSQIE 365
           QH  +      +Q + C      C S ++
Sbjct: 351 QHEVTHSGEKPFQCKECGKAFSRCSSLVQ 379

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>MT_PARLI (P80367) Metallothionein (MT)|
          Length = 65

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 262 CCIREKQCCDREQQCCIRGQPCR 194
           CC   KQC    Q+CCI G+ C+
Sbjct: 7   CCQDGKQCPCAGQECCITGKCCK 29

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>VWF_CANFA (Q28295) Von Willebrand factor precursor (vWF)|
          Length = 2813

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -1

Query: 349  QCR-NWEQQCRIW*RQCRN*EKPCCVWEQQCCIREKQCCDREQQCC 215
            +CR N+   CR    +CR    P C   +   +R+ QCCD  +  C
Sbjct: 2353 ECRPNFTCACRK--DECRRESPPSCPPHRTLALRKTQCCDEYECAC 2396

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>CCD70_HUMAN (Q6NSX1) Coiled-coil domain-containing protein 70 precursor|
          Length = 233

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 11/79 (13%), Positives = 36/79 (45%)
 Frame = -1

Query: 373 QHNSIWERQCRNWEQQCRIW*RQCRN*EKPCCVWEQQCCIREKQCCDREQQCCIRGQPCR 194
           ++ + W+     W++   +W R     ++   +WE++  +  ++    E +  +      
Sbjct: 124 KYRTFWKEDKAFWKEDNALWERDRNLLQEDKALWEEEKALWVEERALLEGEKALWEDKTS 183

Query: 193 IWEQQSSNWRIVICEWIDS 137
           +WE++++ W      W+++
Sbjct: 184 LWEEENALWEEERAFWMEN 202

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>NUDEL_DROME (P98159) Serine protease nudel precursor (EC 3.4.21.-)|
          Length = 2616

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 280  CVWEQQCCIREKQCCDREQQC 218
            CVW  + CI ++Q CDR   C
Sbjct: 1401 CVWGGKRCIAKRQRCDRNVDC 1421

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>KHSE_SYNPX (Q7U659) Homoserine kinase (EC 2.7.1.39) (HSK) (HK)|
          Length = 315

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 208 GQPCRIWEQQSSNWRIVICEWIDSL 134
           G  C   +  S  WR+V CEWI S+
Sbjct: 149 GGLCMTAKAASQRWRVVRCEWISSV 173

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>ZNF22_RAT (Q9ERU2) Zinc finger protein 22 (Kruppel-type zinc finger protein|
           Krox-25)
          Length = 237

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 10/73 (13%)
 Frame = +3

Query: 180 CCSQIRHGCPLIQH----------CCSLSQHCFSRIQHCCSHTQHGFSQLRHCRYQIRHC 329
           C  + +    LIQH          CC     CFS+  H   H +    +  +   +   C
Sbjct: 116 CGERFKQSSNLIQHQRIHTGEKPYCCDECGRCFSQSSHLIQHQRTHTGEKPYQCEECDKC 175

Query: 330 CSQLRHCRSQIEL 368
            SQ  H R  +++
Sbjct: 176 FSQSSHLRQHMKV 188

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>ZNF22_MOUSE (Q9ERU3) Zinc finger protein 22 (Zinc finger protein 422) (Krox-25|
           protein) (Krox-26 protein)
          Length = 237

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 10/73 (13%)
 Frame = +3

Query: 180 CCSQIRHGCPLIQH----------CCSLSQHCFSRIQHCCSHTQHGFSQLRHCRYQIRHC 329
           C  + +    LIQH          CC     CFS+  H   H +    +  +   +   C
Sbjct: 116 CGERFKQSSNLIQHQRIHTGEKPYCCDECGRCFSQSSHLIQHQRTHTGEKPYQCEECDKC 175

Query: 330 CSQLRHCRSQIEL 368
            SQ  H R  +++
Sbjct: 176 FSQSSHLRQHMKV 188

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>SEPP1_MOUSE (P70274) Selenoprotein P precursor (SeP) (Plasma selenoprotein P)|
          Length = 380

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 153 HITILQLLLCCSQIRHGCPLIQHCCSLSQHCFSRIQHCCSHTQH 284
           H+++ Q  LC    R GC + Q  C LS+   +    CC H +H
Sbjct: 268 HLSLAQRKLC----RRGC-INQLLCKLSKESEAAPSSCCCHCRH 306

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>ZFP90_HUMAN (Q8TF47) Zinc finger protein 90 homolog (Zfp-90)|
          Length = 636

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 10/89 (11%)
 Frame = +3

Query: 129 GKRESIHSHITILQLLLCCSQIRHGCPLIQHC----------CSLSQHCFSRIQHCCSHT 278
           G+ E+ H+     Q  LC    +    L+QH           C+L   C    +H  S T
Sbjct: 298 GQHENAHTGEKPYQCSLCGKAFQRSSSLVQHQRIHTGEKPYRCNL---CGRSFRHGTSLT 354

Query: 279 QHGFSQLRHCRYQIRHCCSQLRHCRSQIE 365
           QH  +      +Q + C      C S ++
Sbjct: 355 QHEVTHSGEKPFQCKECGKAFSRCSSLVQ 383

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>ENPP3_HUMAN (O14638) Ectonucleotide pyrophosphatase/phosphodiesterase 3 (E-NPP|
           3) (Phosphodiesterase I/nucleotide pyrophosphatase 3)
           (Phosphodiesterase I beta) (PD-Ibeta) (CD203c antigen)
           [Includes: Alkaline phosphodiesterase I (EC 3.1.4.1);
           Nucleotide p
          Length = 875

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 19/56 (33%), Positives = 29/56 (51%)
 Frame = +2

Query: 5   KTFCGYLSSKRILYP*SYKYAIGLIKRL*TTLNLDKDMSSSGEEGINPLTYHYPPV 172
           KTF  + +    LYP S+    G+I      +NL+K+ S S +E  NP  +H  P+
Sbjct: 204 KTFPNHYTIVTGLYPESH----GIIDNNMYDVNLNKNFSLSSKEQNNPAWWHGQPM 255

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>MCSP_HUMAN (P49901) Sperm mitochondrial-associated cysteine-rich protein|
          Length = 116

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = -1

Query: 346 CRNWEQQCRIW*RQCRN*EKPCCVWE-QQCCI-REKQCCDREQQCCIRGQPC 197
           C++   QC      C   +  CC  +  QCC  +   CC  +  CCI+ + C
Sbjct: 27  CQSKGNQC------CPPKQNQCCQPKGSQCCPPKHNHCCQPKPPCCIQARCC 72

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>NDC1_XENLA (Q6AX31) Nucleoporin NDC1 (xNDC1) (Transmembrane protein 48)|
          Length = 660

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 160 VICEWIDSLFPRGAHVLVQVQCSLQSLDEPNR 65
           V+  W  ++  +G + L+ V C+LQS DE ++
Sbjct: 115 VLASWCYAVLSKGKYQLLVVSCTLQSEDEADK 146

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>KRA59_HUMAN (P26371) Keratin-associated protein 5-9 (Keratin-associated protein|
           5.9) (Ultrahigh sulfur keratin-associated protein 5.9)
           (Keratin, cuticle, ultrahigh sulfur 1) (Keratin, ultra
           high-sulfur matrix protein A) (UHS keratin A) (UHS KerA)
          Length = 169

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 22/64 (34%), Positives = 25/64 (39%), Gaps = 7/64 (10%)
 Frame = +3

Query: 180 CCSQIRHGCPLIQHCCSLSQHCFSRIQH-----CCSHTQHGFS--QLRHCRYQIRHCCSQ 338
           CC      C   + CCS S    S  Q      CCS +  G S  Q   C    + CCSQ
Sbjct: 101 CCKPYCSQCSCCKPCCSSSGRGSSCCQSSCCKPCCSSSGCGSSCCQSSCC----KPCCSQ 156

Query: 339 LRHC 350
            R C
Sbjct: 157 SRCC 160

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>MT_STENE (P55953) Metallothionein (MT)|
          Length = 64

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 262 CCIREKQCCDREQQCCIRGQPCR 194
           CC   K+C  + ++CC  G+ C+
Sbjct: 8   CCKEGKECACKGKECCTTGECCK 30

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>GRN1_CYPCA (P81013) Granulin-1|
          Length = 57

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = +3

Query: 213 IQHCC--SLSQHCFSRIQHCCSHTQHGFSQLRHC 308
           + +CC  S+ Q C   I HCC H  H  S   HC
Sbjct: 23  VWYCCPFSMGQCCRDGI-HCCRHGYHCDSTSTHC 55


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,488,390
Number of Sequences: 219361
Number of extensions: 1138586
Number of successful extensions: 3940
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 3180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3774
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2395157885
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result