ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet12b02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF043693.1| Caenorhabditis elegans cosmid C34B2, complete seq... 46 0.022
2gb|AC125189.4| Mus musculus BAC clone RP23-280K1 from chromosome... 42 0.35
3gb|AC151988.3| Mus musculus BAC clone RP23-362F11 from chromosom... 42 0.35
4gb|AC133951.3| Mus musculus BAC clone RP23-82H2 from chromosome ... 42 0.35
5gb|AC161002.2| Mus musculus BAC clone RP23-6N4 from chromosome 7... 42 0.35
6gb|AC150900.5| Mus musculus BAC clone RP23-145O23 from chromosom... 42 0.35
7gb|AC168909.4| Mus musculus BAC clone RP23-248K5 from chromosome... 42 0.35
8gb|AC171240.3| Mus musculus BAC clone RP24-163J14 from chromosom... 42 0.35
9gb|AC171196.1| Mus musculus BAC clone RP23-182D23 from chromosom... 42 0.35
10gb|AC168854.4| Mus musculus BAC clone RP23-170J16 from chromosom... 42 0.35
11gb|AC164312.3| Mus musculus BAC clone RP23-88M21 from chromosome... 42 0.35
12ref|NM_202757.1| Arabidopsis thaliana RNA binding / structural c... 40 1.4
13ref|NM_116214.2| Arabidopsis thaliana RNA binding / structural c... 40 1.4
14ref|NM_116215.2| Arabidopsis thaliana unknown protein AT3G63500 ... 40 1.4
15ref|NM_180412.1| Arabidopsis thaliana unknown protein AT3G63500 ... 40 1.4
16gb|AC159977.4| Mus musculus chromosome 5, clone RP24-121I11, com... 40 1.4
17emb|AL163818.1|ATMAA21 Arabidopsis thaliana DNA chromosome 3, P1... 40 1.4
18gb|BT005768.1| Arabidopsis thaliana clone RAFL15-29-M22 (R50022)... 40 1.4
19gb|AC004093.1|AC004093 Mus musculus (129SV) DNA, unmapped BAC 10... 40 1.4
20emb|BX511193.5| Zebrafish DNA sequence from clone DKEY-149J18 in... 40 1.4
21gb|AC139845.19| Mus musculus chromosome 15, clone RP23-310D3, co... 38 5.4
22gb|AY648762.1| Danio rerio NDC80 mRNA, complete cds 38 5.4
23gb|AY548884.1| Antonospora locustae chromosome segregation prote... 38 5.4
24gb|AC068661.5| Mus musculus strain C57BL6/J chromosome 6 clone R... 38 5.4
25gb|AC101980.8| Mus musculus chromosome 7, clone RP24-339E15, com... 38 5.4
26ref|XR_002922.1| PREDICTED: Mus musculus similar to vomeronasal ... 38 5.4
27ref|XM_487960.2| PREDICTED: Mus musculus similar to vomeronasal ... 38 5.4
28ref|XM_917618.1| PREDICTED: Mus musculus similar to vomeronasal ... 38 5.4
29emb|CR450706.7| Zebrafish DNA sequence from clone CH211-14K11 in... 38 5.4
30gb|AC132267.3| Mus musculus BAC clone RP24-393E11 from chromosom... 38 5.4
31gb|AC121775.3| Mus musculus BAC clone RP23-356B13 from chromosom... 38 5.4
32gb|AC084384.1| Mus musculus BAC clone RP23-24F24 from 15, comple... 38 5.4
33emb|CR376836.6| Zebrafish DNA sequence from clone CH211-190O6 in... 38 5.4
34gb|AC130313.3| Homo sapiens chromosome 8, clone RP11-460A11, com... 38 5.4
35emb|AL135798.5| Human DNA sequence from clone RP4-655N15 on chro... 38 5.4
36emb|AJ580922.1|WEN580922 Wolbachia endosymbiont of Aedes albopic... 38 5.4
37emb|AL662792.21| Mouse DNA sequence from clone RP23-52L14 on chr... 38 5.4
38emb|AL669931.9| Mouse DNA sequence from clone RP23-31D18 on chro... 38 5.4
39emb|CR925752.5| Mouse DNA sequence from clone RP24-106O24 on chr... 38 5.4
40gb|AC108164.5| Homo sapiens BAC clone RP11-714F4 from 4, complet... 38 5.4
41gb|AC113609.3| Homo sapiens BAC clone RP11-174B22 from 4, comple... 38 5.4
42gb|AC015807.5| Homo sapiens chromosome 8, clone RP11-89M16, comp... 38 5.4
43gb|AC160945.5| Mus musculus 10 BAC RP24-187J13 (Roswell Park Can... 38 5.4
44ref|NM_001003863.1| Danio rerio kinetochore associated 2-like (k... 38 5.4
45gb|BC095554.1| Danio rerio kinetochore associated 2-like, mRNA (... 38 5.4
46dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 38 5.4
47dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 38 5.4
48gb|AC154854.2| Mus musculus BAC clone RP23-23O4 from chromosome ... 38 5.4
49gb|AC011198.2|AC011198 Homo sapiens chromosome 8 clone RP11-18K2... 38 5.4
50gb|AC013264.4| Homo sapiens BAC clone RP11-184N4 from 2, complet... 38 5.4
51dbj|AP002525.1| Oryza sativa (japonica cultivar-group) genomic D... 38 5.4
52dbj|AP005285.2| Oryza sativa (japonica cultivar-group) genomic D... 38 5.4
53dbj|AB015474.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 38 5.4
54dbj|AK101657.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 5.4
55dbj|AK073329.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 5.4
56gb|AC153825.7| Mus musculus 10 BAC RP23-70B19 (Roswell Park Canc... 38 5.4
57gb|AC119998.13| Mus musculus chromosome 17, clone RP24-128A6, co... 38 5.4
58emb|AL138996.4|CNS01DX1 Human chromosome 14 DNA sequence BAC R-9... 38 5.4
59emb|AL133477.16| Human DNA sequence from clone RP11-172F4 on chr... 38 5.4
60gb|AC147972.3| Gallus gallus BAC clone CH261-78M4 from chromosom... 38 5.4
61gb|AC140330.3| Mus musculus BAC clone RP23-410I24 from 6, comple... 38 5.4
62emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB1... 38 5.4 
>gb|AF043693.1| Caenorhabditis elegans cosmid C34B2, complete sequence
          Length = 33448

 Score = 46.1 bits (23), Expect = 0.022
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 64    atttacatcttcatttcataaaa 86
             |||||||||||||||||||||||
Sbjct: 15115 atttacatcttcatttcataaaa 15137
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>gb|AC125189.4| Mus musculus BAC clone RP23-280K1 from chromosome 7, complete sequence
          Length = 192628

 Score = 42.1 bits (21), Expect = 0.35
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 60     acatatttacatcttcatttcataa 84
              ||||||||| |||||||||||||||
Sbjct: 183075 acatatttaaatcttcatttcataa 183099
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>gb|AC151988.3| Mus musculus BAC clone RP23-362F11 from chromosome 7, complete sequence
          Length = 196173

 Score = 42.1 bits (21), Expect = 0.35
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 60    acatatttacatcttcatttcataa 84
             ||||||||| |||||||||||||||
Sbjct: 38507 acatatttaaatcttcatttcataa 38531
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>gb|AC133951.3| Mus musculus BAC clone RP23-82H2 from chromosome 7, complete sequence
          Length = 176364

 Score = 42.1 bits (21), Expect = 0.35
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 60     acatatttacatcttcatttcataa 84
              ||||||||| |||||||||||||||
Sbjct: 127817 acatatttaaatcttcatttcataa 127841
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>gb|AC161002.2| Mus musculus BAC clone RP23-6N4 from chromosome 7, complete sequence
          Length = 182230

 Score = 42.1 bits (21), Expect = 0.35
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 60    acatatttacatcttcatttcataa 84
             ||||||||| |||||||||||||||
Sbjct: 88768 acatatttaaatcttcatttcataa 88792
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>gb|AC150900.5| Mus musculus BAC clone RP23-145O23 from chromosome 7, complete sequence
          Length = 211722

 Score = 42.1 bits (21), Expect = 0.35
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 60    acatatttacatcttcatttcataa 84
             ||||||||| |||||||||||||||
Sbjct: 10727 acatatttaaatcttcatttcataa 10751
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>gb|AC168909.4| Mus musculus BAC clone RP23-248K5 from chromosome 7, complete sequence
          Length = 181751

 Score = 42.1 bits (21), Expect = 0.35
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 60    acatatttacatcttcatttcataa 84
             ||||||||| |||||||||||||||
Sbjct: 50361 acatatttaaatcttcatttcataa 50337
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>gb|AC171240.3| Mus musculus BAC clone RP24-163J14 from chromosome 7, complete sequence
          Length = 180133

 Score = 42.1 bits (21), Expect = 0.35
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 60    acatatttacatcttcatttcataa 84
             ||||||||| |||||||||||||||
Sbjct: 76389 acatatttaaatcttcatttcataa 76365
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>gb|AC171196.1| Mus musculus BAC clone RP23-182D23 from chromosome 7, complete sequence
          Length = 228024

 Score = 42.1 bits (21), Expect = 0.35
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 60    acatatttacatcttcatttcataa 84
             ||||||||| |||||||||||||||
Sbjct: 74913 acatatttaaatcttcatttcataa 74889
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>gb|AC168854.4| Mus musculus BAC clone RP23-170J16 from chromosome 7, complete sequence
          Length = 226303

 Score = 42.1 bits (21), Expect = 0.35
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 60    acatatttacatcttcatttcataa 84
             ||||||||| |||||||||||||||
Sbjct: 77273 acatatttaaatcttcatttcataa 77297
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>gb|AC164312.3| Mus musculus BAC clone RP23-88M21 from chromosome 7, complete sequence
          Length = 223232

 Score = 42.1 bits (21), Expect = 0.35
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 60     acatatttacatcttcatttcataa 84
              ||||||||| |||||||||||||||
Sbjct: 165115 acatatttaaatcttcatttcataa 165091
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>ref|NM_202757.1| Arabidopsis thaliana RNA binding / structural constituent of ribosome
            AT3G63490 transcript variant AT3G63490.2 mRNA, complete
            cds
          Length = 1910

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 69   catcttcatttcataaaact 88
            ||||||||||||||||||||
Sbjct: 1465 catcttcatttcataaaact 1484
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>ref|NM_116214.2| Arabidopsis thaliana RNA binding / structural constituent of ribosome
            AT3G63490 transcript variant AT3G63490.1 mRNA, complete
            cds
          Length = 1920

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 69   catcttcatttcataaaact 88
            ||||||||||||||||||||
Sbjct: 1475 catcttcatttcataaaact 1494
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>ref|NM_116215.2| Arabidopsis thaliana unknown protein AT3G63500 transcript variant
            AT3G63500.2 mRNA, complete cds
          Length = 4024

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 69   catcttcatttcataaaact 88
            ||||||||||||||||||||
Sbjct: 3507 catcttcatttcataaaact 3488
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>ref|NM_180412.1| Arabidopsis thaliana unknown protein AT3G63500 transcript variant
            AT3G63500.1 mRNA, complete cds
          Length = 3525

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 69   catcttcatttcataaaact 88
            ||||||||||||||||||||
Sbjct: 3008 catcttcatttcataaaact 2989
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>gb|AC159977.4| Mus musculus chromosome 5, clone RP24-121I11, complete sequence
          Length = 156847

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 78    ttcataaaactggactggaggcaa 101
             ||||||| ||||||||||||||||
Sbjct: 98550 ttcataagactggactggaggcaa 98527
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>emb|AL163818.1|ATMAA21 Arabidopsis thaliana DNA chromosome 3, P1 clone MAA21 (ESSA project)
          Length = 79153

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 69    catcttcatttcataaaact 88
             ||||||||||||||||||||
Sbjct: 68700 catcttcatttcataaaact 68719
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>gb|BT005768.1| Arabidopsis thaliana clone RAFL15-29-M22 (R50022) unknown protein
            (At3g63500) mRNA, complete cds
          Length = 3191

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 69   catcttcatttcataaaact 88
            ||||||||||||||||||||
Sbjct: 3010 catcttcatttcataaaact 2991
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>gb|AC004093.1|AC004093 Mus musculus (129SV) DNA, unmapped BAC 10817, complete sequence
          Length = 157684

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 78    ttcataaaactggactggaggcaa 101
             ||||||| ||||||||||||||||
Sbjct: 86468 ttcataagactggactggaggcaa 86445
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>emb|BX511193.5| Zebrafish DNA sequence from clone DKEY-149J18 in linkage group 18,
             complete sequence
          Length = 97603

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 78    ttcataaaactggactggag 97
             ||||||||||||||||||||
Sbjct: 67389 ttcataaaactggactggag 67370
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>gb|AC139845.19| Mus musculus chromosome 15, clone RP23-310D3, complete sequence
          Length = 202913

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 60    acatatttacatcttcatt 78
             |||||||||||||||||||
Sbjct: 53674 acatatttacatcttcatt 53692
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>gb|AY648762.1| Danio rerio NDC80 mRNA, complete cds
          Length = 2280

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 79   tcataaaactggactggag 97
            |||||||||||||||||||
Sbjct: 1203 tcataaaactggactggag 1221
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>gb|AY548884.1| Antonospora locustae chromosome segregation protein gene, partial
            cds; and hypothetical protein, DNA repair helicase RAD25,
            beta transducin repeat containing protein-like protein,
            and phospholipase D genes, complete cds
          Length = 12326

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 65   tttacatcttcatttcataaaac 87
            |||||||||||| ||||||||||
Sbjct: 3467 tttacatcttcacttcataaaac 3489
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>gb|AC068661.5| Mus musculus strain C57BL6/J chromosome 6 clone RP23-203F1, complete
             sequence
          Length = 148170

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 25    aaaaggaacacagggaaaa 43
             |||||||||||||||||||
Sbjct: 24384 aaaaggaacacagggaaaa 24402
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>gb|AC101980.8| Mus musculus chromosome 7, clone RP24-339E15, complete sequence
          Length = 219739

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 27     aaggaacacagggaaaaca 45
              |||||||||||||||||||
Sbjct: 113868 aaggaacacagggaaaaca 113850
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>ref|XR_002922.1| PREDICTED: Mus musculus similar to vomeronasal 2, receptor, 1b
            (LOC670312), mRNA
          Length = 2551

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 12   tcttcatgggacaaaaagg 30
            |||||||||||||||||||
Sbjct: 1754 tcttcatgggacaaaaagg 1736
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>ref|XM_487960.2| PREDICTED: Mus musculus similar to vomeronasal 2, receptor, 1b
            (LOC435916), mRNA
          Length = 2550

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 12   tcttcatgggacaaaaagg 30
            |||||||||||||||||||
Sbjct: 1754 tcttcatgggacaaaaagg 1736
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>ref|XM_917618.1| PREDICTED: Mus musculus similar to vomeronasal 2, receptor, 1b
            (LOC435916), mRNA
          Length = 2550

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 12   tcttcatgggacaaaaagg 30
            |||||||||||||||||||
Sbjct: 1754 tcttcatgggacaaaaagg 1736
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>emb|CR450706.7| Zebrafish DNA sequence from clone CH211-14K11 in linkage group 25,
             complete sequence
          Length = 192643

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 99    caacgaggaatcacatcac 117
             |||||||||||||||||||
Sbjct: 22745 caacgaggaatcacatcac 22763
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>gb|AC132267.3| Mus musculus BAC clone RP24-393E11 from chromosome 9, complete sequence
          Length = 151285

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 68    acatcttcatttcataaaa 86
             |||||||||||||||||||
Sbjct: 58675 acatcttcatttcataaaa 58693
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>gb|AC121775.3| Mus musculus BAC clone RP23-356B13 from chromosome 6, complete sequence
          Length = 188443

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 12    tcttcatgggacaaaaagg 30
             |||||||||||||||||||
Sbjct: 79151 tcttcatgggacaaaaagg 79169
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>gb|AC084384.1| Mus musculus BAC clone RP23-24F24 from 15, complete sequence
          Length = 208833

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 74     tcatttcataaaactggac 92
              |||||||||||||||||||
Sbjct: 111430 tcatttcataaaactggac 111448
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>emb|CR376836.6| Zebrafish DNA sequence from clone CH211-190O6 in linkage group 25,
             complete sequence
          Length = 132156

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 99    caacgaggaatcacatcac 117
             |||||||||||||||||||
Sbjct: 95438 caacgaggaatcacatcac 95456
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>gb|AC130313.3| Homo sapiens chromosome 8, clone RP11-460A11, complete sequence
          Length = 148476

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 60     acatatttacatcttcatt 78
              |||||||||||||||||||
Sbjct: 135863 acatatttacatcttcatt 135845
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>emb|AL135798.5| Human DNA sequence from clone RP4-655N15 on chromosome 1p13.1-13.3
             Contains a neurofilament, heavy polypeptide 200kDa (NEFH)
             pseudogene, the CD2 gene for CD2 antigen (p50) sheep red
             blood cell receptor and a ferritin heavy polypeptide 1
             (FTH1) pseudogene, complete sequence
          Length = 103209

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 19    gggacaaaaaggaacacag 37
             |||||||||||||||||||
Sbjct: 71045 gggacaaaaaggaacacag 71063
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>emb|AJ580922.1|WEN580922 Wolbachia endosymbiont of Aedes albopictus partial wspB gene for
           wolbachia surface protein B
          Length = 749

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 61  catatttacatcttcattt 79
           |||||||||||||||||||
Sbjct: 558 catatttacatcttcattt 540
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>emb|AL662792.21| Mouse DNA sequence from clone RP23-52L14 on chromosome 11, complete
             sequence
          Length = 164120

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 25    aaaaggaacacagggaaaa 43
             |||||||||||||||||||
Sbjct: 62307 aaaaggaacacagggaaaa 62289
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>emb|AL669931.9| Mouse DNA sequence from clone RP23-31D18 on chromosome 11 Contains the
              Stc2 gene for stanniocalcin 2 and three CpG islands,
              complete sequence
          Length = 252980

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 24     aaaaaggaacacagggaaa 42
              |||||||||||||||||||
Sbjct: 176740 aaaaaggaacacagggaaa 176722
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>emb|CR925752.5| Mouse DNA sequence from clone RP24-106O24 on chromosome 4, complete
             sequence
          Length = 103739

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 25    aaaaggaacacagggaaaa 43
             |||||||||||||||||||
Sbjct: 16747 aaaaggaacacagggaaaa 16765
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>gb|AC108164.5| Homo sapiens BAC clone RP11-714F4 from 4, complete sequence
          Length = 111729

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 14    ttcatgggacaaaaaggaa 32
             |||||||||||||||||||
Sbjct: 88476 ttcatgggacaaaaaggaa 88458
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>gb|AC113609.3| Homo sapiens BAC clone RP11-174B22 from 4, complete sequence
          Length = 83881

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 64    atttacatcttcatttcat 82
             |||||||||||||||||||
Sbjct: 64893 atttacatcttcatttcat 64875
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>gb|AC015807.5| Homo sapiens chromosome 8, clone RP11-89M16, complete sequence
          Length = 151348

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 60    acatatttacatcttcatt 78
             |||||||||||||||||||
Sbjct: 33458 acatatttacatcttcatt 33440
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>gb|AC160945.5| Mus musculus 10 BAC RP24-187J13 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 168109

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 24    aaaaaggaacacagggaaa 42
             |||||||||||||||||||
Sbjct: 48041 aaaaaggaacacagggaaa 48023
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>ref|NM_001003863.1| Danio rerio kinetochore associated 2-like (kntc2l), mRNA
          Length = 2280

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 79   tcataaaactggactggag 97
            |||||||||||||||||||
Sbjct: 1203 tcataaaactggactggag 1221
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>gb|BC095554.1| Danio rerio kinetochore associated 2-like, mRNA (cDNA clone
            MGC:111801 IMAGE:7245911), complete cds
          Length = 2196

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 79   tcataaaactggactggag 97
            |||||||||||||||||||
Sbjct: 1146 tcataaaactggactggag 1164
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 61       catatttacatcttcatttcata 83
                |||| ||||||||||||||||||
Sbjct: 17987967 cataattacatcttcatttcata 17987945
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 61      catatttacatcttcatttcata 83
               |||| ||||||||||||||||||
Sbjct: 8630976 cataattacatcttcatttcata 8630954
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>gb|AC154854.2| Mus musculus BAC clone RP23-23O4 from chromosome 16, complete sequence
          Length = 209970

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 60    acatatttacatcttcatttcataaaa 86
             |||| ||||||||||||||| ||||||
Sbjct: 64639 acatttttacatcttcattttataaaa 64665



 Score = 38.2 bits (19), Expect = 5.4
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 60    acatatttacatcttcatttcataaaa 86
             |||| ||||||||||||||| ||||||
Sbjct: 51218 acatttttacatcttcattttataaaa 51244
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>gb|AC011198.2|AC011198 Homo sapiens chromosome 8 clone RP11-18K20, complete sequence
          Length = 191233

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 60    acatatttacatcttcatt 78
             |||||||||||||||||||
Sbjct: 34767 acatatttacatcttcatt 34785
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>gb|AC013264.4| Homo sapiens BAC clone RP11-184N4 from 2, complete sequence
          Length = 149445

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 55     gctttacatatttacatct 73
              |||||||||||||||||||
Sbjct: 116269 gctttacatatttacatct 116287
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>dbj|AP002525.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0462H08
          Length = 139152

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 61    catatttacatcttcatttcata 83
             |||| ||||||||||||||||||
Sbjct: 63171 cataattacatcttcatttcata 63149
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>dbj|AP005285.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1003_F04
          Length = 139563

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 61    catatttacatcttcatttcata 83
             |||| ||||||||||||||||||
Sbjct: 49561 cataattacatcttcatttcata 49539
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>dbj|AB015474.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MLM24
          Length = 87487

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                        
Query: 60    acatatttacatcttcatttcataaaa 86
             |||| ||||||||||| ||||||||||
Sbjct: 30001 acatttttacatcttcttttcataaaa 29975
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>dbj|AK101657.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033057G16, full
            insert sequence
          Length = 2585

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 61   catatttacatcttcatttcata 83
            |||| ||||||||||||||||||
Sbjct: 1093 cataattacatcttcatttcata 1115
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>dbj|AK073329.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024B22, full
            insert sequence
          Length = 1500

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 61   catatttacatcttcatttcata 83
            |||| ||||||||||||||||||
Sbjct: 1162 cataattacatcttcatttcata 1184
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>gb|AC153825.7| Mus musculus 10 BAC RP23-70B19 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 279677

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 24    aaaaaggaacacagggaaa 42
             |||||||||||||||||||
Sbjct: 29110 aaaaaggaacacagggaaa 29128
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>gb|AC119998.13| Mus musculus chromosome 17, clone RP24-128A6, complete sequence
          Length = 172124

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 19    gggacaaaaaggaacacag 37
             |||||||||||||||||||
Sbjct: 58377 gggacaaaaaggaacacag 58359
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>emb|AL138996.4|CNS01DX1 Human chromosome 14 DNA sequence BAC R-902B17 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 184260

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 76     atttcataaaactggactg 94
              |||||||||||||||||||
Sbjct: 120174 atttcataaaactggactg 120156
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>emb|AL133477.16| Human DNA sequence from clone RP11-172F4 on chromosome 9q22.2-31.1
             Contains the 3' end of the CDC14B gene for the CDC14 cell
             division cycle 14 homolog B (S. cerevisiae) the HABP4 gene
             for hyaluronan binding protein 4, the gene for a novel
             protein similar to a zinc finger protein, TINP1
             pseudogene, a novel gene and three CpG islands, complete
             sequence
          Length = 139118

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 68    acatcttcatttcataaaa 86
             |||||||||||||||||||
Sbjct: 60467 acatcttcatttcataaaa 60449
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>gb|AC147972.3| Gallus gallus BAC clone CH261-78M4 from chromosome unknown, complete
            sequence
          Length = 197959

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 64   atttacatcttcatttcat 82
            |||||||||||||||||||
Sbjct: 4554 atttacatcttcatttcat 4572
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>gb|AC140330.3| Mus musculus BAC clone RP23-410I24 from 6, complete sequence
          Length = 185681

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 12     tcttcatgggacaaaaagg 30
              |||||||||||||||||||
Sbjct: 160962 tcttcatgggacaaaaagg 160980
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>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica
          Length = 3272609

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 59      tacatatttacatcttcat 77
               |||||||||||||||||||
Sbjct: 1860444 tacatatttacatcttcat 1860462


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,524,677
Number of Sequences: 3902068
Number of extensions: 1524677
Number of successful extensions: 109446
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 109243
Number of HSP's gapped (non-prelim): 203
length of query: 118
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 97
effective length of database: 17,151,101,840
effective search space: 1663656878480
effective search space used: 1663656878480
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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