>K0133_HUMAN (Q14146) Protein KIAA0133|
          Length = 1524

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 18/53 (33%), Positives = 23/53 (43%)
 Frame = -2

Query: 185  GAVLYTCLKPAVHDIVCCSVLFLFITIILLWNNGGECKTGGCWCVQGRSRNCL 27
            GAVL  C  P        SVL   ++ +L  + G  C+ GG    QG  R  L
Sbjct: 1096 GAVLQLCSVPGARGWRLPSVLISSVSTLLEADLGQHCRDGGADISQGSDRTLL 1148

>YEHY_ECOLI (P33361) Inner membrane ABC transporter permease protein yehY|
          Length = 385

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 194 GDGGAVLYTCLKPAVHDIVCCSVLFLFITIILLWNNG 84
           G G A L  C  P     +C  +L  F+ ++L+W  G
Sbjct: 54  GVGCAWLTACFIPGKKGSICALILAQFVFVLLVWGAG 90

>CFT2_YEAST (Q12102) Protein CFT2 (Cleavage factor two protein 2) (105 kDa|
           protein associated with polyadenylation factor I)
          Length = 859

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -2

Query: 107 IILLWNNGGECKTGGCWCVQGRSRNCLYSK 18
           + LL  N G C  G  WC+   S   +Y+K
Sbjct: 149 LTLLAYNAGVCPGGSIWCISTYSEKLVYAK 178

>NU153_HUMAN (P49790) Nuclear pore complex protein Nup153 (Nucleoporin Nup153)|
            (153 kDa nucleoporin)
          Length = 1475

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 139  TISWTAGFRQV*STAPPSPRSGPCFGVNQS 228
            T S +AG   V  T P +P + P FG NQ+
Sbjct: 1295 TTSSSAGSSFVFGTGPSAPSASPAFGANQT 1324


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,503,340
Number of Sequences: 219361
Number of extensions: 814772
Number of successful extensions: 2183
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2183
length of database: 80,573,946
effective HSP length: 75
effective length of database: 64,121,871
effective search space used: 1538924904
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)