ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet125g10 |
|---|---|
| Clone Library Name | barley_pub |
>ELI5_HORVU (P14895) High molecular mass early light-inducible protein HV58,| chloroplast precursor (ELIP) Length = 231 Score = 107 bits (266), Expect = 1e-23 Identities = 51/57 (89%), Positives = 55/57 (96%) Frame = -1 Query: 314 VFSVASLVPLLQGQSVESKNSGVWSADAELWNGRFAMLGLVALAVTEFITGTPFVNV 144 VFSVASL+PLLQGQSVESK+SG+WSADAELWNGRFAMLGLVALA TEFITG PFVN+ Sbjct: 175 VFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFITGAPFVNI 231
>ELI9_HORVU (P14897) Low molecular mass early light-inducible protein HV90,| chloroplast precursor (ELIP) Length = 172 Score = 84.3 bits (207), Expect = 7e-17 Identities = 40/57 (70%), Positives = 47/57 (82%) Frame = -1 Query: 314 VFSVASLVPLLQGQSVESKNSGVWSADAELWNGRFAMLGLVALAVTEFITGTPFVNV 144 V S+ASLVPLLQG+S E + + +A+AELWNGRFAMLGLVALA TE ITG PF+NV Sbjct: 116 VLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLGLVALAATEIITGAPFINV 172
>ELI6_HORVU (P14896) Low molecular mass early light-inducible protein HV60,| chloroplast precursor (ELIP) Length = 167 Score = 84.3 bits (207), Expect = 7e-17 Identities = 39/57 (68%), Positives = 48/57 (84%) Frame = -1 Query: 314 VFSVASLVPLLQGQSVESKNSGVWSADAELWNGRFAMLGLVALAVTEFITGTPFVNV 144 + S+ASLVPLLQG+S E + + +A+AELWNGRFAM+GLVALA TE ITGTPF+NV Sbjct: 111 MLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMIGLVALAATEIITGTPFINV 167
>DS22_CRAPL (Q01931) Desiccation stress protein DSP-22, chloroplast precursor| Length = 199 Score = 78.6 bits (192), Expect = 4e-15 Identities = 33/57 (57%), Positives = 47/57 (82%) Frame = -1 Query: 314 VFSVASLVPLLQGQSVESKNSGVWSADAELWNGRFAMLGLVALAVTEFITGTPFVNV 144 V +A+L+P+ +G S E+KN+G W++DAE+WNGRFAM+GLVALA TE++ G P +NV Sbjct: 143 VLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGGPLINV 199
>ELI_PEA (P11432) Early light-induced protein, chloroplast precursor (ELIP)| Length = 196 Score = 73.9 bits (180), Expect = 9e-14 Identities = 35/55 (63%), Positives = 42/55 (76%) Frame = -1 Query: 314 VFSVASLVPLLQGQSVESKNSGVWSADAELWNGRFAMLGLVALAVTEFITGTPFV 150 + S+ASL+P QG SVESK+ + S+DAE WNGR AMLGLVALA TEF+ GT V Sbjct: 142 LLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAFTEFVKGTSLV 196
>CBR_DUNBA (P27516) Carotene biosynthesis-related protein CBR, chloroplast| precursor Length = 172 Score = 40.8 bits (94), Expect = 9e-04 Identities = 22/51 (43%), Positives = 32/51 (62%) Frame = -1 Query: 314 VFSVASLVPLLQGQSVESKNSGVWSADAELWNGRFAMLGLVALAVTEFITG 162 +FS ASL+P + ++ G ++ DAE+ NGRFAM+G A+ V E I G Sbjct: 120 LFSAASLIPAFARRKGDAM--GPFTPDAEMTNGRFAMIGFAAMLVYEGIQG 168 Score = 27.3 bits (59), Expect = 9.9 Identities = 14/28 (50%), Positives = 16/28 (57%) Frame = -1 Query: 245 WSADAELWNGRFAMLGLVALAVTEFITG 162 +S E+ NGR AMLG VA E TG Sbjct: 73 FSGAPEIINGRLAMLGFVAALGAELSTG 100
>HEMH_ORYSA (O22101) Ferrochelatase-2, chloroplast precursor (EC 4.99.1.1)| (Ferrochelatase II) (Protoheme ferro-lyase 2) (Heme synthetase 2) Length = 526 Score = 38.9 bits (89), Expect = 0.003 Identities = 17/33 (51%), Positives = 22/33 (66%) Frame = -1 Query: 245 WSADAELWNGRFAMLGLVALAVTEFITGTPFVN 147 W+ AE WNGR AML ++AL V E TG F++ Sbjct: 485 WTKSAETWNGRAAMLAVLALLVLEVTTGEGFLH 517
>HEMH2_ARATH (O04921) Ferrochelatase-2, chloroplast precursor (EC 4.99.1.1)| (Ferrochelatase II) (Protoheme ferro-lyase 2) (Heme synthetase 2) Length = 512 Score = 38.9 bits (89), Expect = 0.003 Identities = 17/33 (51%), Positives = 22/33 (66%) Frame = -1 Query: 245 WSADAELWNGRFAMLGLVALAVTEFITGTPFVN 147 W+ AE WNGR AML ++AL V E TG F++ Sbjct: 472 WTKSAETWNGRAAMLAVLALLVLEVTTGKGFLH 504
>YCF17_CYAPA (P48367) Hypothetical 5.5 kDa protein ycf17| Length = 49 Score = 37.4 bits (85), Expect = 0.010 Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 2/37 (5%) Frame = -1 Query: 266 ESKNSGVW--SADAELWNGRFAMLGLVALAVTEFITG 162 E +N W ++ AE WNGR AMLG +A +TE +TG Sbjct: 3 EERNIWNWGFTSGAENWNGRLAMLGFIAALLTESLTG 39
>YCF17_PORPU (P51355) Hypothetical 5.5 kDa protein ycf17 (ORF48)| Length = 48 Score = 37.0 bits (84), Expect = 0.013 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 2/35 (5%) Frame = -1 Query: 260 KNSGVW--SADAELWNGRFAMLGLVALAVTEFITG 162 KN W + AE WNGRFAM+G +A+ E +TG Sbjct: 3 KNFWFWGFTDSAETWNGRFAMIGFMAVIFIELVTG 37
>HEMH_ANASP (Q8YQR8) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 388 Score = 35.0 bits (79), Expect = 0.048 Identities = 15/27 (55%), Positives = 21/27 (77%) Frame = -1 Query: 242 SADAELWNGRFAMLGLVALAVTEFITG 162 ++ AE+WNGR AMLG +AL + E +TG Sbjct: 352 TSSAEVWNGRIAMLGFIAL-IIELVTG 377
>HEMH_SYNP6 (Q5N2B2) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 387 Score = 33.9 bits (76), Expect = 0.11 Identities = 16/25 (64%), Positives = 20/25 (80%) Frame = -1 Query: 236 DAELWNGRFAMLGLVALAVTEFITG 162 +AE+WNGR AMLG +AL V E +TG Sbjct: 354 NAEVWNGRIAMLGFLALLV-ELLTG 377
>HEMH_SYNY3 (P54225) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 387 Score = 33.5 bits (75), Expect = 0.14 Identities = 16/24 (66%), Positives = 19/24 (79%) Frame = -1 Query: 233 AELWNGRFAMLGLVALAVTEFITG 162 AE+WNGR AMLG +AL V E I+G Sbjct: 355 AEVWNGRLAMLGFIALLV-ELISG 377
>CB24_ARATH (P27521) Chlorophyll a-b binding protein 4, chloroplast precursor| (LHCI type III CAB-4) (LHCP) Length = 251 Score = 33.5 bits (75), Expect = 0.14 Identities = 15/34 (44%), Positives = 20/34 (58%) Frame = -1 Query: 245 WSADAELWNGRFAMLGLVALAVTEFITGTPFVNV 144 W AEL NGR+AMLG+ + + E T +NV Sbjct: 91 WFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINV 124
>CB12_PETHY (P13869) Chlorophyll a-b binding protein, chloroplast precursor| (LHCI type II CAB) Length = 270 Score = 33.1 bits (74), Expect = 0.18 Identities = 19/48 (39%), Positives = 26/48 (54%) Frame = -1 Query: 290 PLLQGQSVESKNSGVWSADAELWNGRFAMLGLVALAVTEFITGTPFVN 147 PL G ES W+A AEL + R+AMLG + + EF+T +N Sbjct: 90 PLGLGSDPESLK---WNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLN 134
>HEMH_SYNEL (Q8DGU6) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 388 Score = 31.6 bits (70), Expect = 0.53 Identities = 18/30 (60%), Positives = 22/30 (73%) Frame = -1 Query: 251 GVWSADAELWNGRFAMLGLVALAVTEFITG 162 G+ SA AE WNGR AMLG +AL + E I+G Sbjct: 351 GMTSA-AERWNGRLAMLGFLALMI-ELISG 378
>HEMH_SYNPX (Q7U5G0) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 391 Score = 31.6 bits (70), Expect = 0.53 Identities = 14/28 (50%), Positives = 19/28 (67%) Frame = -1 Query: 245 WSADAELWNGRFAMLGLVALAVTEFITG 162 W+ +E+WNGR AMLG A + E I+G Sbjct: 355 WNNSSEVWNGRLAMLGFSAF-LLELISG 381
>CB4_SPIOL (P36494) Chlorophyll a-b binding protein CP24, chloroplast| precursor Length = 261 Score = 29.6 bits (65), Expect = 2.0 Identities = 13/31 (41%), Positives = 21/31 (67%) Frame = -1 Query: 245 WSADAELWNGRFAMLGLVALAVTEFITGTPF 153 W +AEL +GR+AML ++ + V + TG P+ Sbjct: 100 WYREAELIHGRWAMLAVLGIFVGQAWTGIPW 130
>YCF17_GUITH (O78425) Hypothetical 6.2 kDa protein ycf17| Length = 53 Score = 29.6 bits (65), Expect = 2.0 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = -1 Query: 233 AELWNGRFAMLGLVALAVTEFIT 165 AE WNGR AM+ + + EFIT Sbjct: 20 AENWNGRLAMISFLLIICVEFIT 42
>LH18_EUGGR (P08976) Light-harvesting complex I LH38 proteins precursor| [Contains: LH38 protein 1; LH38 protein 2; LH38 protein 3] (Fragment) Length = 530 Score = 29.3 bits (64), Expect = 2.6 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = -1 Query: 245 WSADAELWNGRFAMLGLVALAVTEFITGTPFVN 147 ++ +AE+ NGR AM G+ L V +TG +N Sbjct: 494 YTKEAEIKNGRLAMNGMFGLEVQSHVTGKSPIN 526
>ANAG_HUMAN (P54802) Alpha-N-acetylglucosaminidase precursor (EC 3.2.1.50)| (N-acetyl-alpha-glucosaminidase) (NAG) [Contains: Alpha-N-acetylglucosaminidase 82 kDa form; Alpha-N-acetylglucosaminidase 77 kDa form] Length = 743 Score = 28.9 bits (63), Expect = 3.4 Identities = 11/32 (34%), Positives = 15/32 (46%) Frame = -1 Query: 245 WSADAELWNGRFAMLGLVALAVTEFITGTPFV 150 WS +W + LGL + EF TG F+ Sbjct: 168 WSGQEAIWQRVYLALGLTQAEINEFFTGPAFL 199
>FIP1_SCHPO (Q09919) Plasma membrane iron permease| Length = 397 Score = 28.5 bits (62), Expect = 4.5 Identities = 9/26 (34%), Positives = 16/26 (61%) Frame = -1 Query: 248 VWSADAELWNGRFAMLGLVALAVTEF 171 +WS E+W G F+++ +V + V F Sbjct: 85 IWSGSEEIWEGVFSLIAVVLITVMGF 110
>TRMB_MYCTU (P67498) tRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.33)| (tRNA(m7G46)-methyltransferase) Length = 263 Score = 28.5 bits (62), Expect = 4.5 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 4/49 (8%) Frame = -1 Query: 290 PLLQGQ----SVESKNSGVWSADAELWNGRFAMLGLVALAVTEFITGTP 156 P+ GQ S+ S+ SG+ A E W + LGL+AL + GTP Sbjct: 20 PVASGQLPSTSIRSRRSGISKAQRETWERLWPELGLLALPQSP--RGTP 66
>TRMB_MYCBO (P67499) tRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.33)| (tRNA(m7G46)-methyltransferase) Length = 263 Score = 28.5 bits (62), Expect = 4.5 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 4/49 (8%) Frame = -1 Query: 290 PLLQGQ----SVESKNSGVWSADAELWNGRFAMLGLVALAVTEFITGTP 156 P+ GQ S+ S+ SG+ A E W + LGL+AL + GTP Sbjct: 20 PVASGQLPSTSIRSRRSGISKAQRETWERLWPELGLLALPQSP--RGTP 66
>HEMH_PROMP (Q7V2F5) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 391 Score = 28.5 bits (62), Expect = 4.5 Identities = 12/29 (41%), Positives = 20/29 (68%) Frame = -1 Query: 245 WSADAELWNGRFAMLGLVALAVTEFITGT 159 W+ +E+WNGR AM+ + L + E I+G+ Sbjct: 355 WNNSSEVWNGRVAMIVFLILFI-ELISGS 382
>FCPC_MACPY (Q40299) Fucoxanthin-chlorophyll a-c binding protein C, chloroplast| precursor Length = 216 Score = 28.1 bits (61), Expect = 5.8 Identities = 13/27 (48%), Positives = 18/27 (66%) Frame = -1 Query: 230 ELWNGRFAMLGLVALAVTEFITGTPFV 150 EL NGR A +G++AL V E + P+V Sbjct: 178 ELNNGRAAQMGILALMVHEELNNKPYV 204
>FCPD_MACPY (Q40298) Fucoxanthin-chlorophyll a-c binding protein D, chloroplast| precursor (Fragment) Length = 182 Score = 28.1 bits (61), Expect = 5.8 Identities = 13/27 (48%), Positives = 18/27 (66%) Frame = -1 Query: 230 ELWNGRFAMLGLVALAVTEFITGTPFV 150 EL NGR A +G++AL V E + P+V Sbjct: 144 ELNNGRAAQMGILALMVHEELNNKPYV 170
>HEMH_PROMM (Q7V6C6) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 391 Score = 28.1 bits (61), Expect = 5.8 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = -1 Query: 242 SADAELWNGRFAMLGLVALAVTEFITG 162 + +E WNGR AMLG A + E I+G Sbjct: 356 NTSSEAWNGRIAMLGFAAF-LLELISG 381
>FCPB_MACPY (Q40296) Fucoxanthin-chlorophyll a-c binding protein B, chloroplast| precursor Length = 217 Score = 28.1 bits (61), Expect = 5.8 Identities = 13/27 (48%), Positives = 18/27 (66%) Frame = -1 Query: 230 ELWNGRFAMLGLVALAVTEFITGTPFV 150 EL NGR A +G++AL V E + P+V Sbjct: 179 ELNNGRAAQMGILALMVHEELNNKPYV 205
>FCPA_MACPY (Q40297) Fucoxanthin-chlorophyll a-c binding protein A, chloroplast| precursor Length = 217 Score = 28.1 bits (61), Expect = 5.8 Identities = 13/27 (48%), Positives = 18/27 (66%) Frame = -1 Query: 230 ELWNGRFAMLGLVALAVTEFITGTPFV 150 EL NGR A +G++AL V E + P+V Sbjct: 179 ELNNGRAAQMGILALMVHEELNNKPYV 205
>FCPE_MACPY (Q40301) Fucoxanthin-chlorophyll a-c binding protein E, chloroplast| precursor Length = 212 Score = 27.3 bits (59), Expect = 9.9 Identities = 11/27 (40%), Positives = 19/27 (70%) Frame = -1 Query: 230 ELWNGRFAMLGLVALAVTEFITGTPFV 150 EL NGR A +G++A+ V E ++ P++ Sbjct: 174 ELNNGRAAQMGILAMMVHEQLSNQPYI 200
>CB12_LYCES (P10708) Chlorophyll a-b binding protein 7, chloroplast precursor| (LHCI type II CAB-7) Length = 270 Score = 27.3 bits (59), Expect = 9.9 Identities = 12/33 (36%), Positives = 19/33 (57%) Frame = -1 Query: 245 WSADAELWNGRFAMLGLVALAVTEFITGTPFVN 147 W+ AEL + R+AMLG + + E +T +N Sbjct: 102 WNQQAELVHCRWAMLGAAGIFIPELLTKIGILN 134 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 31,095,679 Number of Sequences: 219361 Number of extensions: 491339 Number of successful extensions: 1511 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 1473 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1506 length of database: 80,573,946 effective HSP length: 80 effective length of database: 63,025,066 effective search space used: 1512601584 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
