ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet125g04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GI1L1_ARATH (Q9MAA7) Probable gibberellin receptor GID1L1 (EC 3.... 32 0.40
2LIPS_RAT (P15304) Hormone-sensitive lipase (EC 3.1.1.79) (HSL) 31 0.89
3LIP2_MORS1 (P24484) Lipase 2 (EC 3.1.1.3) (Triacylglycerol lipase) 30 1.2
4PHLB2_MOUSE (Q8K1N2) Pleckstrin homology-like domain family B me... 30 1.5
5BRN3_CHICK (Q91998) Brain-specific homeobox/POU domain protein 3... 30 1.5
6LIPS_MOUSE (P54310) Hormone-sensitive lipase (EC 3.1.1.79) (HSL) 30 2.0
7COX10_MOUSE (Q8CFY5) Protoheme IX farnesyltransferase, mitochond... 28 4.4
8ALBU_MACMU (Q28522) Serum albumin precursor (Fragment) 28 5.8
9PHZD_PSEFL (Q51790) Probable isochorismatase (EC 3.3.2.1) (2,3 d... 28 5.8
10HEMH_BACHD (Q9KDK9) Ferrochelatase (EC 4.99.1.1) (Protoheme ferr... 28 7.6
11CYNS_CHRVO (Q7NWU9) Cyanate hydratase (EC 4.2.1.104) (Cyanase) (... 27 9.9
12BAI3_HUMAN (O60242) Brain-specific angiogenesis inhibitor 3 prec... 27 9.9
13TSP2_MOUSE (Q03350) Thrombospondin-2 precursor 27 9.9
14CAUP_DROME (P54269) Homeobox protein caupolican 27 9.9
15PHAR1_CHICK (Q801X6) Phosphatase and actin regulator 1 27 9.9

>GI1L1_ARATH (Q9MAA7) Probable gibberellin receptor GID1L1 (EC 3.-.-.-)|
           (GID1-like protein 1)
          Length = 345

 Score = 32.0 bits (71), Expect = 0.40
 Identities = 18/44 (40%), Positives = 26/44 (59%)
 Frame = -3

Query: 315 ALVVAPLGDVLRDRVLGYAARLKDMGKDVELVEFEGQQHGFSIL 184
           +LVV    D++RD  L YA  LK  G++V+L+  E    GF +L
Sbjct: 281 SLVVVAGLDLIRDWQLAYAEGLKKAGQEVKLMHLEKATVGFYLL 324



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>LIPS_RAT (P15304) Hormone-sensitive lipase (EC 3.1.1.79) (HSL)|
          Length = 1068

 Score = 30.8 bits (68), Expect = 0.89
 Identities = 18/40 (45%), Positives = 23/40 (57%)
 Frame = -3

Query: 312  LVVAPLGDVLRDRVLGYAARLKDMGKDVELVEFEGQQHGF 193
            LV   L  +L D V+ +A RLKD+G+ V L   E   HGF
Sbjct: 997  LVACALDPMLDDSVM-FARRLKDLGQPVTLKVVEDLPHGF 1035



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>LIP2_MORS1 (P24484) Lipase 2 (EC 3.1.1.3) (Triacylglycerol lipase)|
          Length = 433

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 18/40 (45%), Positives = 22/40 (55%)
 Frame = -3

Query: 312 LVVAPLGDVLRDRVLGYAARLKDMGKDVELVEFEGQQHGF 193
           +VVA L D+LRD  L YA  L+  G  V+     G  HGF
Sbjct: 355 IVVAEL-DILRDEGLAYAELLQKEGVQVQTYTVLGAPHGF 393



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>PHLB2_MOUSE (Q8K1N2) Pleckstrin homology-like domain family B member 2 (Protein|
           LL5-beta)
          Length = 1249

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -3

Query: 264 YAARLKDMGKDVELVEFEGQQHGFSILQPFGEAADELMGVLRR 136
           Y    K   +DV++  F    H  S L P G  +DEL+G L R
Sbjct: 503 YRCHRKGSLQDVDVAGFGNLGHSASFLAPRGSRSDELLGDLTR 545



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>BRN3_CHICK (Q91998) Brain-specific homeobox/POU domain protein 3 (Brn-3)|
          Length = 341

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
 Frame = +1

Query: 4   RKTHPSEMEWIYFYTRHTVPAGKKNPTSGDHHSFTTSSLSGVHEPPEHSHQ----LVGRL 171
           +KTHP + +  Y    HT+ +    PTS   H    S L+  H P  H HQ    L G L
Sbjct: 68  QKTHPFKPDATY----HTMSSVSCTPTSSSVHLHHPSVLT-THHPHHHHHQPAQGLEGEL 122

Query: 172 AERL 183
            + L
Sbjct: 123 LDHL 126



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>LIPS_MOUSE (P54310) Hormone-sensitive lipase (EC 3.1.1.79) (HSL)|
          Length = 759

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = -3

Query: 312 LVVAPLGDVLRDRVLGYAARLKDMGKDVELVEFEGQQHGF 193
           LV   L  +L D V+ +A RL+D+G+ V L   E   HGF
Sbjct: 688 LVACALDPMLDDSVM-FARRLRDLGQPVTLKVVEDLPHGF 726



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>COX10_MOUSE (Q8CFY5) Protoheme IX farnesyltransferase, mitochondrial precursor|
           (EC 2.5.1.-) (Heme O synthase)
          Length = 443

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +3

Query: 42  LHQTYSSRRKKKPNIRRSPFIHHIIAQRGTRTA*ALPSTRRPPR 173
           LH+  S R K KP    SPF+ H  + +       LPS   P R
Sbjct: 64  LHRGLSQRVKPKPEPPASPFLEHTSSGQARADEDELPSFPAPSR 107



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>ALBU_MACMU (Q28522) Serum albumin precursor (Fragment)|
          Length = 600

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +1

Query: 58  VPAGKKNPTSGDHHSFTTSSLSGVHEPPEHSHQLVGRLAERLKDREAMLLSLELDK 225
           +P  K+ P + D+ S   + L  +HE    S ++     E L +R     +LELD+
Sbjct: 456 LPEAKRMPCAEDYLSVVLNRLCVLHEKTPVSEKVTKCCTESLVNRRPCFSALELDE 511



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>PHZD_PSEFL (Q51790) Probable isochorismatase (EC 3.3.2.1) (2,3 dihydro-2,3|
           dihydroxybenzoate synthase)
          Length = 207

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 300 PLGDVLRDRVLGYAARLKDMGKD 232
           PL D LRD+V+G AAR++    D
Sbjct: 46  PLPDALRDQVVGNAARIRQWAAD 68



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>HEMH_BACHD (Q9KDK9) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme|
           synthetase)
          Length = 310

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -3

Query: 306 VAPLGDVLRDRVLGYAARLKDMGKDVELVEFEGQQHGFSILQPFGEAADELM 151
           V+PL  +  D+ +    +L ++  D+E   + G +H    + PF E A E M
Sbjct: 53  VSPLAKITDDQAIALEQKLNELYDDIEFKSYLGLKH----IDPFIEDAVEQM 100



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>CYNS_CHRVO (Q7NWU9) Cyanate hydratase (EC 4.2.1.104) (Cyanase) (Cyanate lyase)|
           (Cyanate hydrolase)
          Length = 155

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +1

Query: 76  NPTSGDHHSFTTSSLSGVHEPPEHSHQLVGRLAERLKDREAMLLSLEL 219
           N  +G   ++TT++L G H  PE + +LV    E  +D  A+L ++ L
Sbjct: 32  NQGTGLSLAYTTAALLGQHALPEAAARLVAERLELDEDAIALLQAIPL 79



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>BAI3_HUMAN (O60242) Brain-specific angiogenesis inhibitor 3 precursor|
          Length = 1522

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 305 WRRWATCSVTACWGTRRGSRT 243
           W +W+TCSVT   G++  +RT
Sbjct: 297 WSQWSTCSVTCGQGSQVRTRT 317



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>TSP2_MOUSE (Q03350) Thrombospondin-2 precursor|
          Length = 1172

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 317 RRSSWRRWATCSVTACWGTRRGSR 246
           R S W  W+ C+VT   G R  SR
Sbjct: 496 RWSPWSPWSACTVTCAGGIRERSR 519



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>CAUP_DROME (P54269) Homeobox protein caupolican|
          Length = 693

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 10/57 (17%)
 Frame = +2

Query: 41  STPDIQFPQEKKTQHQEITI----------HSPHHRSAGYTNRLSTPINSSAASPNG 181
           S+ D Q P +   QHQ+  +          H PHH    ++  L +P++  ++   G
Sbjct: 489 SSADQQLPHQPLQQHQQQQLQQLQQQQQHHHHPHHHHPHHSMELGSPLSMMSSYAGG 545



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>PHAR1_CHICK (Q801X6) Phosphatase and actin regulator 1|
          Length = 501

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 20/71 (28%), Positives = 28/71 (39%)
 Frame = +1

Query: 58  VPAGKKNPTSGDHHSFTTSSLSGVHEPPEHSHQLVGRLAERLKDREAMLLSLELDKLDVF 237
           +P  K     GDH       LS + +PP    + + R+A  L D  A +      KL   
Sbjct: 109 LPPKKSAAFPGDHEDTPVKQLSLLKQPPALPPKPIARIASHLTDPGAPV------KLPCM 162

Query: 238 PHVLEPRRVPQ 270
           P  L P   P+
Sbjct: 163 PVKLSPPLPPK 173


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.132    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,641,000
Number of Sequences: 219361
Number of extensions: 904440
Number of successful extensions: 3411
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3411
length of database: 80,573,946
effective HSP length: 81
effective length of database: 62,805,705
effective search space used: 1507336920
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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