>ref|NM_184413.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1086

 Score = 85.7 bits (43), Expect = 8e-14
 Identities = 106/127 (83%)
 Strand = Plus / Minus

                                                                       
Query: 191 gagaagccatgctgctgtccctcgaactcgacaagctcgacgtctttccccatgtccttg 250
           |||||||||||||||  ||||||||||||||| ||||| ||  | || ||||| ||||| 
Sbjct: 995 gagaagccatgctgcgctccctcgaactcgacgagctccaccgccttgcccatctccttc 936

                                                                       
Query: 251 agcctcgccgcgtaccccagcacgcggtcacggagcacgtcgcccaacggcgccacgacg 310
           | |||||||||||| |||| |||||||||   ||||||||||||    | ||||||||||
Sbjct: 935 aacctcgccgcgtagcccaccacgcggtcgtagagcacgtcgccgccggacgccacgacg 876

                  
Query: 311 agcgccg 317
           |||||||
Sbjct: 875 agcgccg 869

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 85.7 bits (43), Expect = 8e-14
 Identities = 106/127 (83%)
 Strand = Plus / Minus

                                                                           
Query: 191     gagaagccatgctgctgtccctcgaactcgacaagctcgacgtctttccccatgtccttg 250
               |||||||||||||||  ||||||||||||||| ||||| ||  | || ||||| ||||| 
Sbjct: 2896853 gagaagccatgctgcgctccctcgaactcgacgagctccaccgccttgcccatctccttc 2896794

                                                                           
Query: 251     agcctcgccgcgtaccccagcacgcggtcacggagcacgtcgcccaacggcgccacgacg 310
               | |||||||||||| |||| |||||||||   ||||||||||||    | ||||||||||
Sbjct: 2896793 aacctcgccgcgtagcccaccacgcggtcgtagagcacgtcgccgccggacgccacgacg 2896734

                      
Query: 311     agcgccg 317
               |||||||
Sbjct: 2896733 agcgccg 2896727



 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 104/127 (81%)
 Strand = Plus / Plus

                                                                           
Query: 191     gagaagccatgctgctgtccctcgaactcgacaagctcgacgtctttccccatgtccttg 250
               ||||||||| |||||| ||||||||||||| | ||||| ||  | || ||||| ||||| 
Sbjct: 2953551 gagaagccaagctgctctccctcgaactcggcgagctccaccgccttgcccatctccttc 2953610

                                                                           
Query: 251     agcctcgccgcgtaccccagcacgcggtcacggagcacgtcgcccaacggcgccacgacg 310
               | ||||||||||||  ||| |||||||||   ||||||||||||    | ||||||||||
Sbjct: 2953611 aacctcgccgcgtagtccaccacgcggtcgtagagcacgtcgccgccggacgccacgacg 2953670

                      
Query: 311     agcgccg 317
               |||||||
Sbjct: 2953671 agcgccg 2953677

>dbj|AP003045.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0030H07
          Length = 168253

 Score = 85.7 bits (43), Expect = 8e-14
 Identities = 106/127 (83%)
 Strand = Plus / Minus

                                                                          
Query: 191    gagaagccatgctgctgtccctcgaactcgacaagctcgacgtctttccccatgtccttg 250
              |||||||||||||||  ||||||||||||||| ||||| ||  | || ||||| ||||| 
Sbjct: 103851 gagaagccatgctgcgctccctcgaactcgacgagctccaccgccttgcccatctccttc 103792

                                                                          
Query: 251    agcctcgccgcgtaccccagcacgcggtcacggagcacgtcgcccaacggcgccacgacg 310
              | |||||||||||| |||| |||||||||   ||||||||||||    | ||||||||||
Sbjct: 103791 aacctcgccgcgtagcccaccacgcggtcgtagagcacgtcgccgccggacgccacgacg 103732

                     
Query: 311    agcgccg 317
              |||||||
Sbjct: 103731 agcgccg 103725



 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 104/127 (81%)
 Strand = Plus / Plus

                                                                          
Query: 191    gagaagccatgctgctgtccctcgaactcgacaagctcgacgtctttccccatgtccttg 250
              ||||||||| |||||| ||||||||||||| | ||||| ||  | || ||||| ||||| 
Sbjct: 160549 gagaagccaagctgctctccctcgaactcggcgagctccaccgccttgcccatctccttc 160608

                                                                          
Query: 251    agcctcgccgcgtaccccagcacgcggtcacggagcacgtcgcccaacggcgccacgacg 310
              | ||||||||||||  ||| |||||||||   ||||||||||||    | ||||||||||
Sbjct: 160609 aacctcgccgcgtagtccaccacgcggtcgtagagcacgtcgccgccggacgccacgacg 160668

                     
Query: 311    agcgccg 317
              |||||||
Sbjct: 160669 agcgccg 160675

>dbj|AP003225.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0011G08
          Length = 139490

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 104/127 (81%)
 Strand = Plus / Plus

                                                                         
Query: 191   gagaagccatgctgctgtccctcgaactcgacaagctcgacgtctttccccatgtccttg 250
             ||||||||| |||||| ||||||||||||| | ||||| ||  | || ||||| ||||| 
Sbjct: 35068 gagaagccaagctgctctccctcgaactcggcgagctccaccgccttgcccatctccttc 35127

                                                                         
Query: 251   agcctcgccgcgtaccccagcacgcggtcacggagcacgtcgcccaacggcgccacgacg 310
             | ||||||||||||  ||| |||||||||   ||||||||||||    | ||||||||||
Sbjct: 35128 aacctcgccgcgtagtccaccacgcggtcgtagagcacgtcgccgccggacgccacgacg 35187

                    
Query: 311   agcgccg 317
             |||||||
Sbjct: 35188 agcgccg 35194

>ref|NM_186425.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1559

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 192  agaagccatgctgctgtccctcgaactc 219
            |||||||||||||||| |||||||||||
Sbjct: 1099 agaagccatgctgctgcccctcgaactc 1072

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                           
Query: 192     agaagccatgctgctgtccctcgaactc 219
               |||||||||||||||| |||||||||||
Sbjct: 3392613 agaagccatgctgctgcccctcgaactc 3392640



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                    
Query: 212     tcgaactcgacaagctcgacgtctttccccatgtccttgagcctcgccgcgta 264
               ||||||| ||| |||||||||   ||||||||| |||  ||||||||||||||
Sbjct: 3377760 tcgaacttgacgagctcgacgcgcttccccatggcctgcagcctcgccgcgta 3377812

>dbj|AP004664.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0428D12
          Length = 141678

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 192   agaagccatgctgctgtccctcgaactc 219
             |||||||||||||||| |||||||||||
Sbjct: 32433 agaagccatgctgctgcccctcgaactc 32460



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                  
Query: 212   tcgaactcgacaagctcgacgtctttccccatgtccttgagcctcgccgcgta 264
             ||||||| ||| |||||||||   ||||||||| |||  ||||||||||||||
Sbjct: 17580 tcgaacttgacgagctcgacgcgcttccccatggcctgcagcctcgccgcgta 17632

>dbj|AK106266.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-G01, full
            insert sequence
          Length = 1559

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 192  agaagccatgctgctgtccctcgaactc 219
            |||||||||||||||| |||||||||||
Sbjct: 1099 agaagccatgctgctgcccctcgaactc 1072

>gb|AY661658.1| Sorghum bicolor clone BAC 796all, complete sequence
          Length = 103167

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 90    agatcaccattcattcaccaca 111
             ||||||||||||||||||||||
Sbjct: 21635 agatcaccattcattcaccaca 21614

>gb|AY661657.1| Sorghum bicolor clone BAC 60H10, complete sequence
          Length = 125927

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 90    agatcaccattcattcaccaca 111
             ||||||||||||||||||||||
Sbjct: 88271 agatcaccattcattcaccaca 88250

>gb|AY661656.1| Sorghum bicolor clone BAC 88M4, complete sequence
          Length = 279448

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 90     agatcaccattcattcaccaca 111
              ||||||||||||||||||||||
Sbjct: 276859 agatcaccattcattcaccaca 276838

>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 257     gccgcgtaccccagcacgcgg 277
               |||||||||||||||||||||
Sbjct: 2185639 gccgcgtaccccagcacgcgg 2185619

>ref|NM_186422.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1189

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                
Query: 212 tcgaactcgacaagctcgacgtctttccccatgtccttgagcctcgccgcgta 264
           ||||||| ||| |||||||||   ||||||||| |||  ||||||||||||||
Sbjct: 944 tcgaacttgacgagctcgacgcgcttccccatggcctgcagcctcgccgcgta 892

>ref|XM_506174.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1714_H10.153
           mRNA
          Length = 1772

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                
Query: 212 tcgaactcgacaagctcgacgtctttccccatgtccttgagcctcgccgcgta 264
           ||||||| ||| |||||||||   ||||||||| |||  ||||||||||||||
Sbjct: 944 tcgaacttgacgagctcgacgcgcttccccatggcctgcagcctcgccgcgta 892

>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 161     tcggccgcctcgccgaacggc 181
               |||||||||||||||||||||
Sbjct: 1728188 tcggccgcctcgccgaacggc 1728208

>gb|CP000138.1| Rhizobium etli CFN 42 plasmid p42f, complete sequence
          Length = 642517

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 210    cctcgaactcgacaagctcga 230
              |||||||||||||||||||||
Sbjct: 516088 cctcgaactcgacaagctcga 516068

>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 152     atcaactcgtcggccgcctcgccga 176
               |||||||||||| ||||||||||||
Sbjct: 1090097 atcaactcgtcgcccgcctcgccga 1090121

>dbj|AK106274.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-G12, full
           insert sequence
          Length = 1772

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                
Query: 212 tcgaactcgacaagctcgacgtctttccccatgtccttgagcctcgccgcgta 264
           ||||||| ||| |||||||||   ||||||||| |||  ||||||||||||||
Sbjct: 944 tcgaacttgacgagctcgacgcgcttccccatggcctgcagcctcgccgcgta 892

>dbj|AK105789.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-H03, full
           insert sequence
          Length = 1189

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                
Query: 212 tcgaactcgacaagctcgacgtctttccccatgtccttgagcctcgccgcgta 264
           ||||||| ||| |||||||||   ||||||||| |||  ||||||||||||||
Sbjct: 944 tcgaacttgacgagctcgacgcgcttccccatggcctgcagcctcgccgcgta 892

>dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1714_H10
          Length = 191580

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                   
Query: 212    tcgaactcgacaagctcgacgtctttccccatgtccttgagcctcgccgcgta 264
              ||||||| ||| |||||||||   ||||||||| |||  ||||||||||||||
Sbjct: 187453 tcgaacttgacgagctcgacgcgcttccccatggcctgcagcctcgccgcgta 187505

>ref|XM_755612.1| Ustilago maydis 521 hypothetical protein (UM04558.1) partial mRNA
          Length = 1122

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 214 gaactcgacaagctcgacgt 233
           ||||||||||||||||||||
Sbjct: 7   gaactcgacaagctcgacgt 26

>gb|AC132395.3| Mus musculus BAC clone RP23-391F17 from chromosome 18, complete sequence
          Length = 212786

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 233    tctttccccatgtccttgag 252
              ||||||||||||||||||||
Sbjct: 211503 tctttccccatgtccttgag 211484

>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 202     ctgctgtccctcgaactcgacaagctcg 229
               |||||||| | |||||||||||||||||
Sbjct: 4233117 ctgctgtcgcgcgaactcgacaagctcg 4233144

>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29
          Length = 309050

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 161   tcggccgcctcgccgaacgg 180
             ||||||||||||||||||||
Sbjct: 64954 tcggccgcctcgccgaacgg 64973

>gb|AC107025.3| Homo sapiens 3 BAC RP11-474M18 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 178033

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 32     ggatttatttctacaccagacata 55
              |||| |||||||||||||||||||
Sbjct: 169920 ggatctatttctacaccagacata 169943

>gb|AC117482.4| Homo sapiens 3 BAC RP11-651J20 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 171333

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 32     ggatttatttctacaccagacata 55
              |||| |||||||||||||||||||
Sbjct: 138047 ggatctatttctacaccagacata 138024

>gb|AE005929.1| Caulobacter crescentus CB15 section 255 of 359 of the complete genome
          Length = 13698

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 157  ctcgtcggccgcctcgccga 176
            ||||||||||||||||||||
Sbjct: 1538 ctcgtcggccgcctcgccga 1519

>gb|AC121263.8| Mus musculus chromosome 18, clone RP24-219I3, complete sequence
          Length = 169528

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 233    tctttccccatgtccttgag 252
              ||||||||||||||||||||
Sbjct: 132544 tctttccccatgtccttgag 132563


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,257,738
Number of Sequences: 3902068
Number of extensions: 2257738
Number of successful extensions: 45831
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45559
Number of HSP's gapped (non-prelim): 266
length of query: 317
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 295
effective length of database: 17,147,199,772
effective search space: 5058423932740
effective search space used: 5058423932740
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)