ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet125f11 |
|---|---|
| Clone Library Name | barley_pub |
>CB2G_LYCES (P07369) Chlorophyll a-b binding protein 3C, chloroplast precursor| (LHCII type I CAB-3C) (LHCP) Length = 267 Score = 77.4 bits (189), Expect = 9e-15 Identities = 35/35 (100%), Positives = 35/35 (100%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 159 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK Sbjct: 233 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 267
>CB23_APIGR (P92919) Chlorophyll a-b binding protein, chloroplast precursor| (Allergen Api g 3) Length = 264 Score = 77.4 bits (189), Expect = 9e-15 Identities = 35/35 (100%), Positives = 35/35 (100%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 159 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK Sbjct: 230 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264
>CB22_HORVU (P08963) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (LHCP) Length = 264 Score = 77.4 bits (189), Expect = 9e-15 Identities = 35/35 (100%), Positives = 35/35 (100%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 159 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK Sbjct: 230 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264
>CB2C_LYCES (P14275) Chlorophyll a-b binding protein 1C, chloroplast precursor| (LHCII type I CAB-1C) (LHCP) (Fragments) Length = 265 Score = 77.4 bits (189), Expect = 9e-15 Identities = 35/35 (100%), Positives = 35/35 (100%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 159 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK Sbjct: 231 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
>CB2B_LYCES (P07370) Chlorophyll a-b binding protein 1B, chloroplast precursor| (LHCII type I CAB-1B) (LHCP) Length = 265 Score = 77.4 bits (189), Expect = 9e-15 Identities = 35/35 (100%), Positives = 35/35 (100%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 159 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK Sbjct: 231 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
>CB2A_LYCES (P14274) Chlorophyll a-b binding protein 1A, chloroplast precursor| (LHCII type I CAB-1A) (LHCP) (Fragments) Length = 265 Score = 77.4 bits (189), Expect = 9e-15 Identities = 35/35 (100%), Positives = 35/35 (100%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 159 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK Sbjct: 231 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
>CB24_PETSP (P04782) Chlorophyll a-b binding protein 25, chloroplast precursor| (LHCII type I CAB-25) (LHCP) Length = 266 Score = 77.4 bits (189), Expect = 9e-15 Identities = 35/35 (100%), Positives = 35/35 (100%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 159 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK Sbjct: 232 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266
>CB21_SINAL (P13851) Chlorophyll a-b binding protein 1, chloroplast precursor| (LHCII type I CAB-1) (LHCP) Length = 266 Score = 77.4 bits (189), Expect = 9e-15 Identities = 35/35 (100%), Positives = 35/35 (100%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 159 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK Sbjct: 232 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266
>CB21_PETSP (P04779) Chlorophyll a-b binding protein 13, chloroplast precursor| (LHCII type I CAB-13) (LHCP) Length = 266 Score = 77.4 bits (189), Expect = 9e-15 Identities = 35/35 (100%), Positives = 35/35 (100%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 159 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK Sbjct: 232 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266
>CB21_RAPSA (P14584) Chlorophyll a-b binding of LHCII type 1 protein| (Chlorophyll a-b binding of LHCII type I protein) (CAB) (LHCP) (Fragment) Length = 124 Score = 77.4 bits (189), Expect = 9e-15 Identities = 35/35 (100%), Positives = 35/35 (100%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 159 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK Sbjct: 90 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 124
>CB2F_LYCES (P14277) Chlorophyll a-b binding protein 3B, chloroplast precursor| (LHCII type I CAB-3B) (LHCP) (Fragments) Length = 267 Score = 76.6 bits (187), Expect = 2e-14 Identities = 34/35 (97%), Positives = 35/35 (100%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 159 AIVTGKGPLENLADH+ADPVNNNAWAFATNFVPGK Sbjct: 233 AIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267
>CB2E_LYCES (P14276) Chlorophyll a-b binding protein 3A, chloroplast precursor| (LHCII type I CAB-3A) (LHCP) (Fragments) Length = 267 Score = 76.6 bits (187), Expect = 2e-14 Identities = 34/35 (97%), Positives = 35/35 (100%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 159 AIVTGKGPLENLADH+ADPVNNNAWAFATNFVPGK Sbjct: 233 AIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267
>CB22_ARATH (P04778) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (CAB-140) (LHCP) Length = 267 Score = 76.6 bits (187), Expect = 2e-14 Identities = 34/35 (97%), Positives = 35/35 (100%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 159 AIVTGKGP+ENLADHLADPVNNNAWAFATNFVPGK Sbjct: 233 AIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267
>CB21_ARATH (P04777) Chlorophyll a-b binding protein 165/180, chloroplast| precursor (LHCII type I CAB-165/180) Length = 267 Score = 76.6 bits (187), Expect = 2e-14 Identities = 34/35 (97%), Positives = 35/35 (100%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 159 AIVTGKGP+ENLADHLADPVNNNAWAFATNFVPGK Sbjct: 233 AIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267
>CB22_ORYSA (P12331) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (LHCP) Length = 261 Score = 76.3 bits (186), Expect = 2e-14 Identities = 34/35 (97%), Positives = 35/35 (100%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 159 AIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK Sbjct: 227 AIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 261
>CB29_MAIZE (P27497) Chlorophyll a-b binding protein M9, chloroplast precursor| (LHCII type I CAB-M9) (LHCP) Length = 265 Score = 76.3 bits (186), Expect = 2e-14 Identities = 34/35 (97%), Positives = 35/35 (100%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 159 AIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK Sbjct: 231 AIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
>CB22_TOBAC (P27493) Chlorophyll a-b binding protein 21, chloroplast precursor| (LHCII type I CAB-21) (LHCP) Length = 265 Score = 76.3 bits (186), Expect = 2e-14 Identities = 34/35 (97%), Positives = 35/35 (100%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 159 AIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK Sbjct: 231 AIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
>CB21_ORYSA (P12330) Chlorophyll a-b binding protein 1, chloroplast precursor| (LHCII type I CAB-1) (LHCP) Length = 265 Score = 76.3 bits (186), Expect = 2e-14 Identities = 34/35 (97%), Positives = 35/35 (100%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 159 AIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK Sbjct: 231 AIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
>CB22_CUCSA (P08222) Chlorophyll a-b binding protein of LHCII type 1| (Chlorophyll a-b binding protein of LHCII type I) (CAB) (LHCP) (Fragment) Length = 206 Score = 76.3 bits (186), Expect = 2e-14 Identities = 34/35 (97%), Positives = 35/35 (100%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 159 AIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK Sbjct: 172 AIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 206
>CB21_CUCSA (P08221) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) (Fragment) Length = 255 Score = 76.3 bits (186), Expect = 2e-14 Identities = 34/35 (97%), Positives = 35/35 (100%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 159 AIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK Sbjct: 221 AIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 255
>CB24_TOBAC (P27495) Chlorophyll a-b binding protein 40, chloroplast precursor| (LHCII type I CAB-40) (LHCP) Length = 267 Score = 76.3 bits (186), Expect = 2e-14 Identities = 34/35 (97%), Positives = 35/35 (100%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 159 AIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK Sbjct: 233 AIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267
>CB23_NICPL (P12469) Chlorophyll a-b binding protein C, chloroplast precursor| (LHCII type I CAB-C) (LHCP) Length = 267 Score = 76.3 bits (186), Expect = 2e-14 Identities = 34/35 (97%), Positives = 35/35 (100%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 159 AIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK Sbjct: 233 AIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267
>CB22_MAIZE (P06671) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 265 Score = 75.5 bits (184), Expect = 3e-14 Identities = 33/35 (94%), Positives = 35/35 (100%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 159 AIVTGKGPLENLADH+ADPVNNNAWA+ATNFVPGK Sbjct: 231 AIVTGKGPLENLADHIADPVNNNAWAYATNFVPGK 265
>CB2A_PYRPY (P24006) Chlorophyll a-b binding protein 1A, chloroplast precursor| (LHCII type II CAB-1A) (LHCP) Length = 278 Score = 75.5 bits (184), Expect = 3e-14 Identities = 33/35 (94%), Positives = 35/35 (100%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 159 AIVTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK Sbjct: 244 AIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278
>CB2A_PINSY (P15193) Chlorophyll a-b binding protein type 2 member 1A,| chloroplast precursor (Chlorophyll a-b binding protein type II 1A) (CAB) (LHCP) Length = 278 Score = 75.5 bits (184), Expect = 3e-14 Identities = 33/35 (94%), Positives = 35/35 (100%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 159 AIVTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK Sbjct: 244 AIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278
>CB2B_PINSY (P15194) Chlorophyll a-b binding protein type 2 member 1B,| chloroplast precursor (Chlorophyll a-b binding protein type II 1B) (CAB) (LHCP) Length = 274 Score = 75.5 bits (184), Expect = 3e-14 Identities = 33/35 (94%), Positives = 35/35 (100%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 159 AIVTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK Sbjct: 240 AIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 274
>CB22_PEA (P07371) Chlorophyll a-b binding protein AB80, chloroplast| precursor (LHCII type I CAB-AB80) (LHCP) Length = 269 Score = 75.1 bits (183), Expect = 4e-14 Identities = 33/35 (94%), Positives = 35/35 (100%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 159 AIVTGKGPLENLADHLADPVNNNAW++ATNFVPGK Sbjct: 235 AIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 269
>CB21_PEA (P04159) Chlorophyll a-b binding protein AB96 (LHCII type I| CAB-AB96) (LHCP) (Major 15) (Fragment) Length = 228 Score = 75.1 bits (183), Expect = 4e-14 Identities = 33/35 (94%), Positives = 35/35 (100%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 159 AIVTGKGPLENLADHLADPVNNNAW++ATNFVPGK Sbjct: 194 AIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 228
>CB2D_LYCES (P10707) Chlorophyll a-b binding protein 1D (LHCII type I CAB-1D)| (LHCP) (Fragment) Length = 116 Score = 75.1 bits (183), Expect = 4e-14 Identities = 33/35 (94%), Positives = 35/35 (100%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 159 AIVTGKGPLENLADHLADPVNNNAW++ATNFVPGK Sbjct: 82 AIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 116
>CB21_TOBAC (P27492) Chlorophyll a-b binding protein 16, chloroplast precursor| (LHCII type I CAB-16) (LHCP) Length = 266 Score = 75.1 bits (183), Expect = 4e-14 Identities = 33/35 (94%), Positives = 35/35 (100%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 159 AIVTGKGPLENLADHLADPVNNNAW++ATNFVPGK Sbjct: 232 AIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266
>CB2A_SPIOL (P12333) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 267 Score = 75.1 bits (183), Expect = 4e-14 Identities = 34/35 (97%), Positives = 34/35 (97%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 159 AIVTGKGPLENLADHLADPVNNNAW FATNFVPGK Sbjct: 233 AIVTGKGPLENLADHLADPVNNNAWNFATNFVPGK 267
>CB25_TOBAC (P27496) Chlorophyll a-b binding protein 50, chloroplast precursor| (LHCII type I CAB-50) (LHCP) Length = 267 Score = 75.1 bits (183), Expect = 4e-14 Identities = 33/35 (94%), Positives = 35/35 (100%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 159 AIVTGKGPLENLADHLADPVNNNAW++ATNFVPGK Sbjct: 233 AIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267
>CB25_PETSP (P04783) Chlorophyll a-b binding protein 91R, chloroplast precursor| (LHCII type I CAB-91R) (LHCP) Length = 267 Score = 75.1 bits (183), Expect = 4e-14 Identities = 33/35 (94%), Positives = 35/35 (100%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 159 AIVTGKGPLENLADHLADPVNNNAW++ATNFVPGK Sbjct: 233 AIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267
>CB23_PETSP (P04781) Chlorophyll a-b binding protein 22R, chloroplast precursor| (LHCII type I CAB-22R) (LHCP) Length = 267 Score = 75.1 bits (183), Expect = 4e-14 Identities = 33/35 (94%), Positives = 35/35 (100%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 159 AIVTGKGPLENLADHLADPVNNNAW++ATNFVPGK Sbjct: 233 AIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267
>CB21_SOYBN (P12471) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) (Fragment) Length = 245 Score = 74.7 bits (182), Expect = 6e-14 Identities = 33/35 (94%), Positives = 35/35 (100%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 159 AIVTGKGPLENLADHLA+PVNNNAWA+ATNFVPGK Sbjct: 211 AIVTGKGPLENLADHLAEPVNNNAWAYATNFVPGK 245
>CB25_NICPL (P12470) Chlorophyll a-b binding protein E, chloroplast precursor| (LHCII type I CAB-E) (LHCP) Length = 266 Score = 74.3 bits (181), Expect = 8e-14 Identities = 32/35 (91%), Positives = 35/35 (100%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 159 A+VTGKGPLENLADHLADPVNNNAW++ATNFVPGK Sbjct: 232 ALVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266
>CB28_PEA (P27490) Chlorophyll a-b binding protein 8, chloroplast precursor| (LHCII type I CAB-8) Length = 268 Score = 73.9 bits (180), Expect = 1e-13 Identities = 32/35 (91%), Positives = 35/35 (100%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 159 AIVTGKGPLENLADHL+DPVNNNAW++ATNFVPGK Sbjct: 234 AIVTGKGPLENLADHLSDPVNNNAWSYATNFVPGK 268
>CB48_MAIZE (Q00827) Chlorophyll a-b binding protein 48, chloroplast precursor| (LHCII type I CAB-48) (LHCP) Length = 264 Score = 73.9 bits (180), Expect = 1e-13 Identities = 32/35 (91%), Positives = 34/35 (97%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 159 AIVTGKGP+ENLADHL DPVNNNAWA+ATNFVPGK Sbjct: 230 AIVTGKGPIENLADHLTDPVNNNAWAYATNFVPGK 264
>CB27_TOBAC (P27491) Chlorophyll a-b binding protein 7, chloroplast precursor| (LHCII type I CAB-7) (LHCP) Length = 267 Score = 73.6 bits (179), Expect = 1e-13 Identities = 32/35 (91%), Positives = 34/35 (97%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 159 AIVTGKGPL+NL DHLADPVNNNAWA+ATNFVPGK Sbjct: 233 AIVTGKGPLDNLVDHLADPVNNNAWAYATNFVPGK 267
>CB21_MAIZE (P12329) Chlorophyll a-b binding protein 1, chloroplast precursor| (LHCII type I CAB-1) (LHCP) Length = 262 Score = 73.6 bits (179), Expect = 1e-13 Identities = 32/34 (94%), Positives = 34/34 (100%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPG 162 AIVTGKGPLENLADH+ADPVNNNAWA+ATNFVPG Sbjct: 228 AIVTGKGPLENLADHIADPVNNNAWAYATNFVPG 261
>CB23_SOYBN (P09756) Chlorophyll a-b binding protein 3, chloroplast precursor| (LHCII type I CAB-3) (LHCP) Length = 263 Score = 73.6 bits (179), Expect = 1e-13 Identities = 33/35 (94%), Positives = 34/35 (97%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 159 AIVTGKGPLENLADHLA PVNNNAWA+ATNFVPGK Sbjct: 229 AIVTGKGPLENLADHLAGPVNNNAWAYATNFVPGK 263
>CB21_LEMGI (P12328) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 264 Score = 72.8 bits (177), Expect = 2e-13 Identities = 32/35 (91%), Positives = 34/35 (97%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 159 AIVTGKGP+ENLADH+ADPV NNAWAFATNFVPGK Sbjct: 230 AIVTGKGPIENLADHIADPVANNAWAFATNFVPGK 264
>CB22_PETSP (P04780) Chlorophyll a-b binding protein 22L, chloroplast precursor| (LHCII type I CAB-22L) (LHCP) Length = 267 Score = 70.5 bits (171), Expect = 1e-12 Identities = 31/35 (88%), Positives = 33/35 (94%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 159 AIVTGKGPLENLADHL DPVNNNAW++ATNFVP K Sbjct: 233 AIVTGKGPLENLADHLVDPVNNNAWSYATNFVPRK 267
>CB25_LYCES (P14279) Chlorophyll a-b binding protein 5, chloroplast precursor| (LHCII type I CAB-5) (LHCP) (Fragment) Length = 237 Score = 70.5 bits (171), Expect = 1e-12 Identities = 30/35 (85%), Positives = 34/35 (97%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 159 AIVTGKGP+ENL+DH+ADPV NNAWA+ATNFVPGK Sbjct: 203 AIVTGKGPIENLSDHIADPVANNAWAYATNFVPGK 237
>CB21_WHEAT (P04784) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 266 Score = 70.5 bits (171), Expect = 1e-12 Identities = 31/35 (88%), Positives = 33/35 (94%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 159 AIVTGKGPLE+LADH+ADPVNNNAW ATNFVPGK Sbjct: 232 AIVTGKGPLEDLADHIADPVNNNAWLIATNFVPGK 266
>CB22_PINSY (P15192) Chlorophyll a-b binding protein type 2 member 2| (Chlorophyll a-b binding protein type II 2) (CAB) (LHCP) (Fragment) Length = 150 Score = 70.1 bits (170), Expect = 1e-12 Identities = 31/35 (88%), Positives = 33/35 (94%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 159 AIVTGKGP+ENL DHLADPV NNAWA+ATNFVPGK Sbjct: 116 AIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 150
>CB26_PETSP (P12062) Chlorophyll a-b binding protein 37, chloroplast precursor| (LHCII type I CAB-37) (LHCP) Length = 265 Score = 70.1 bits (170), Expect = 1e-12 Identities = 31/35 (88%), Positives = 33/35 (94%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 159 AIVTGKGP+ENL DH+ADPV NNAWAFATNFVPGK Sbjct: 231 AIVTGKGPIENLYDHVADPVANNAWAFATNFVPGK 265
>CB21_GOSHI (P27518) Chlorophyll a-b binding protein 151, chloroplast precursor| (LHCII type II CAB-151) (LHCP) Length = 265 Score = 70.1 bits (170), Expect = 1e-12 Identities = 31/35 (88%), Positives = 33/35 (94%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 159 AIVTGKGP+ENL DHLADPV NNAWA+ATNFVPGK Sbjct: 231 AIVTGKGPIENLFDHLADPVANNAWAYATNFVPGK 265
>CB21_PINTH (P10049) Chlorophyll a-b binding protein type I, chloroplast| precursor (CAB) (LHCP) Length = 266 Score = 70.1 bits (170), Expect = 1e-12 Identities = 31/35 (88%), Positives = 33/35 (94%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 159 AIVTGKGP+ENL DHLADPV NNAWA+ATNFVPGK Sbjct: 232 AIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 266
>CB22_SOYBN (P09755) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (LHCP) Length = 256 Score = 69.7 bits (169), Expect = 2e-12 Identities = 31/35 (88%), Positives = 32/35 (91%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 159 AIVTGKGPLENLADHLADPVNNNAWA+AT PGK Sbjct: 222 AIVTGKGPLENLADHLADPVNNNAWAYATKLCPGK 256
>CB23_TOBAC (P27494) Chlorophyll a-b binding protein 36, chloroplast precursor| (LHCII type I CAB-36) (LHCP) Length = 265 Score = 68.9 bits (167), Expect = 3e-12 Identities = 30/35 (85%), Positives = 33/35 (94%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 159 AIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK Sbjct: 231 AIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 265
>CB23_ORYSA (P27519) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 263 Score = 68.9 bits (167), Expect = 3e-12 Identities = 30/35 (85%), Positives = 33/35 (94%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 159 AIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK Sbjct: 229 AIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263
>CB24_LYCES (P14278) Chlorophyll a-b binding protein 4, chloroplast precursor| (LHCII type I CAB-4) (LHCP) Length = 265 Score = 68.2 bits (165), Expect = 5e-12 Identities = 29/35 (82%), Positives = 33/35 (94%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 159 AIVTGKGP+ENL+DH+ DPV NNAWA+ATNFVPGK Sbjct: 231 AIVTGKGPIENLSDHINDPVANNAWAYATNFVPGK 265
>CB23_POLMU (P15195) Chlorophyll a-b binding protein type 1 member F3,| chloroplast precursor (DE Chlorophyll a-b binding protein type I F3) (CAB-F3) (LHCP) Length = 265 Score = 67.8 bits (164), Expect = 7e-12 Identities = 29/35 (82%), Positives = 32/35 (91%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 159 AIVTGKGP+ENL+DHLADP NNAWA+ATNF PGK Sbjct: 231 AIVTGKGPIENLSDHLADPAVNNAWAYATNFTPGK 265
>CB23_PEA (P27520) Chlorophyll a-b binding protein 215, chloroplast precursor| (LHCII type II CAB-215) (LHCP) Length = 265 Score = 67.4 bits (163), Expect = 9e-12 Identities = 29/35 (82%), Positives = 33/35 (94%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 159 AIVTGKGP++NL DH+ADPV NNAWAFATNFVPG+ Sbjct: 231 AIVTGKGPIQNLYDHVADPVANNAWAFATNFVPGQ 265
>CB23_HORVU (P27523) Chlorophyll a-b binding protein of LHCII type III,| chloroplast precursor (CAB) Length = 268 Score = 62.4 bits (150), Expect = 3e-10 Identities = 28/34 (82%), Positives = 28/34 (82%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPG 162 AIVTGKGPLENL DHL DPV NNAW FAT F PG Sbjct: 234 AIVTGKGPLENLFDHLDDPVANNAWVFATKFAPG 267
>CB23_LYCES (P27489) Chlorophyll a-b binding protein 13, chloroplast precursor| (LHCII type III CAB-13) Length = 265 Score = 61.2 bits (147), Expect = 7e-10 Identities = 27/34 (79%), Positives = 29/34 (85%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPG 162 AIVTGKGPLENL DHL +PV NNAW +AT FVPG Sbjct: 231 AIVTGKGPLENLLDHLDNPVANNAWVYATKFVPG 264
>CB2_PHYPA (P20866) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 269 Score = 58.9 bits (141), Expect = 3e-09 Identities = 27/34 (79%), Positives = 28/34 (82%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPG 162 AIVTGKGPLENL DHLADPV NNAWA+A PG Sbjct: 234 AIVTGKGPLENLNDHLADPVANNAWAYAPTSPPG 267
>CB2_DUNSA (P20865) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 273 Score = 56.2 bits (134), Expect = 2e-08 Identities = 24/33 (72%), Positives = 28/33 (84%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVP 165 AIVTGKGP+ENL DHLA+P NNA+A+AT F P Sbjct: 240 AIVTGKGPIENLTDHLANPAENNAFAYATKFTP 272
>CB2_CHLMO (P22686) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 256 Score = 55.5 bits (132), Expect = 4e-08 Identities = 25/33 (75%), Positives = 28/33 (84%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVP 165 AIVTGKGP++NLADHLADP NNA+A AT F P Sbjct: 222 AIVTGKGPIQNLADHLADPGTNNAFAAATKFTP 254
>CB2_CHLRE (P14273) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 253 Score = 53.9 bits (128), Expect = 1e-07 Identities = 24/33 (72%), Positives = 28/33 (84%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVP 165 AIVTGKGP++NL DHLA+P NNA+AFAT F P Sbjct: 219 AIVTGKGPVQNLDDHLANPTVNNAFAFATKFTP 251
>CB2_DUNTE (P27517) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 253 Score = 53.5 bits (127), Expect = 1e-07 Identities = 24/34 (70%), Positives = 27/34 (79%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPG 162 AIVTGKGP++NL DHLADP N A+A AT F PG Sbjct: 219 AIVTGKGPVQNLTDHLADPTVNKAFASATKFTPG 252
>CB2_MALDO (P15773) Chlorophyll a-b binding protein AB10, chloroplast| precursor (LHCII type I CAB-AB10) (LHCP) Length = 268 Score = 45.1 bits (105), Expect = 5e-05 Identities = 23/34 (67%), Positives = 25/34 (73%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPG 162 AIV+ K LENLADHL VNNNA + TNFVPG Sbjct: 234 AIVSRKDRLENLADHLGWTVNNNALSNVTNFVPG 267
>CB13_LYCES (P27522) Chlorophyll a-b binding protein 8, chloroplast precursor| (LHCI type III CAB-8) Length = 273 Score = 42.7 bits (99), Expect = 2e-04 Identities = 18/23 (78%), Positives = 20/23 (86%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNN 195 A+VTG GP +NL DHLADPVNNN Sbjct: 243 ALVTGVGPYQNLLDHLADPVNNN 265
>CB26_ARATH (Q9XF89) Chlorophyll a-b binding protein CP26, chloroplast| precursor (Light-harvesting complex II protein 5) (LHCB5) (LHCIIc) Length = 280 Score = 38.5 bits (88), Expect = 0.005 Identities = 16/23 (69%), Positives = 19/23 (82%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVNNN 195 A VTG+GP+ENLA HL+DP NN Sbjct: 243 AYVTGEGPVENLAKHLSDPFGNN 265
>CB21_EUGGR (P12327) Chlorophyll a-b binding protein of LHCII type 1| (Chlorophyll a-b binding protein of LHCII type I) (CAB) (LHCP) (Fragment) Length = 127 Score = 35.8 bits (81), Expect = 0.030 Identities = 18/34 (52%), Positives = 21/34 (61%), Gaps = 1/34 (2%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADP-VNNNAWAFATNFVP 165 AIVTG+GP+EN HL DP +N A T F P Sbjct: 88 AIVTGEGPVENWLYHLQDPSAHNGLTALVTQFAP 121
>CB11_LYCES (P12360) Chlorophyll a-b binding protein 6A, chloroplast precursor| (LHCI type I CAB-6A) (Light-harvesting complex I 26 kDa protein) Length = 246 Score = 35.0 bits (79), Expect = 0.050 Identities = 15/19 (78%), Positives = 16/19 (84%) Frame = -3 Query: 251 GKGPLENLADHLADPVNNN 195 G GPLENLA HLADP +NN Sbjct: 215 GTGPLENLATHLADPWHNN 233
>CB24_ARATH (P27521) Chlorophyll a-b binding protein 4, chloroplast precursor| (LHCI type III CAB-4) (LHCP) Length = 251 Score = 34.3 bits (77), Expect = 0.086 Identities = 14/20 (70%), Positives = 16/20 (80%) Frame = -3 Query: 257 VTGKGPLENLADHLADPVNN 198 VTGKGP ENL HL+DP +N Sbjct: 225 VTGKGPFENLLQHLSDPWHN 244
>CB4B_ARATH (Q9XF88) Chlorophyll a-b binding protein CP29.2, chloroplast| precursor (LHCII protein 4.2) (LHCB4.2) Length = 287 Score = 32.0 bits (71), Expect = 0.43 Identities = 13/21 (61%), Positives = 16/21 (76%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVN 201 A TGKGPL N A HL+DP++ Sbjct: 257 AAATGKGPLNNWATHLSDPLH 277
>CB4A_ARATH (Q07473) Chlorophyll a-b binding protein CP29.1, chloroplast| precursor (LHCII protein 4.1) (LHCB4.1) Length = 290 Score = 32.0 bits (71), Expect = 0.43 Identities = 13/21 (61%), Positives = 16/21 (76%) Frame = -3 Query: 263 AIVTGKGPLENLADHLADPVN 201 A TGKGPL N A HL+DP++ Sbjct: 260 AAATGKGPLNNWATHLSDPLH 280
>CB12_PETHY (P13869) Chlorophyll a-b binding protein, chloroplast precursor| (LHCI type II CAB) Length = 270 Score = 29.6 bits (65), Expect = 2.1 Identities = 12/18 (66%), Positives = 14/18 (77%) Frame = -3 Query: 260 IVTGKGPLENLADHLADP 207 I TG GP++NL HLADP Sbjct: 241 IYTGTGPIDNLFAHLADP 258
>CB12_LYCES (P10708) Chlorophyll a-b binding protein 7, chloroplast precursor| (LHCI type II CAB-7) Length = 270 Score = 29.6 bits (65), Expect = 2.1 Identities = 12/18 (66%), Positives = 14/18 (77%) Frame = -3 Query: 260 IVTGKGPLENLADHLADP 207 I TG GP++NL HLADP Sbjct: 241 IYTGTGPIDNLFAHLADP 258
>LH18_EUGGR (P08976) Light-harvesting complex I LH38 proteins precursor| [Contains: LH38 protein 1; LH38 protein 2; LH38 protein 3] (Fragment) Length = 530 Score = 29.3 bits (64), Expect = 2.8 Identities = 11/22 (50%), Positives = 16/22 (72%) Frame = -3 Query: 260 IVTGKGPLENLADHLADPVNNN 195 + TG+ PL NL+ HLA+P+ N Sbjct: 333 LATGESPLANLSAHLANPIGAN 354
>LH15_EUGGR (P08975) Light-harvesting complex I LH35 proteins precursor| [Contains: LH35 protein 1; LH35 protein 2] (Fragment) Length = 331 Score = 29.3 bits (64), Expect = 2.8 Identities = 12/22 (54%), Positives = 15/22 (68%) Frame = -3 Query: 260 IVTGKGPLENLADHLADPVNNN 195 + TG+ PL NLA H A+PV N Sbjct: 304 LATGESPLANLAAHFANPVGAN 325
>CRCB2_NOCFA (Q5YR85) Protein crcB homolog 2| Length = 140 Score = 28.1 bits (61), Expect = 6.2 Identities = 13/23 (56%), Positives = 16/23 (69%) Frame = +1 Query: 157 YLPGTKLVAKAHALLLTGSARWS 225 YL GT L A A +L TG+ARW+ Sbjct: 112 YLAGTVLAALAGVVLGTGAARWA 134 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 32,460,400 Number of Sequences: 219361 Number of extensions: 504193 Number of successful extensions: 1115 Number of sequences better than 10.0: 75 Number of HSP's better than 10.0 without gapping: 1106 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1115 length of database: 80,573,946 effective HSP length: 63 effective length of database: 66,754,203 effective search space used: 1602100872 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
