ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet125f06 |
|---|---|
| Clone Library Name | barley_pub |
>PTHP_STRCO (O50515) Phosphocarrier protein HPr (Histidine-containing protein)| Length = 92 Score = 31.2 bits (69), Expect = 0.64 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = +2 Query: 251 GWKYGPLTQPSAIFLYAASVRGMPSQLSDDDGLP 352 GW G +P++IF+ AA+ G+P ++ DG P Sbjct: 8 GWAEGLHARPASIFVRAATATGVPVTIAKADGSP 41
>GUNX_CLOTM (P15329) Putative endoglucanase X (EC 3.2.1.4) (EGX)| (Endo-1,4-beta-glucanase) (Cellulase) (Fragment) Length = 224 Score = 30.4 bits (67), Expect = 1.1 Identities = 11/23 (47%), Positives = 17/23 (73%) Frame = -3 Query: 342 SSSLSWDGIPLTEAAYKKIADGW 274 ++ +SWDG+ L+E Y KIA+ W Sbjct: 111 NTDISWDGLHLSEIGYTKIANIW 133
>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor| Length = 534 Score = 30.0 bits (66), Expect = 1.4 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = -3 Query: 354 CGNPSSSLSWDGIPLTEAAYKKI 286 C N SS L WDG+ T+ AYK I Sbjct: 498 CPNTSSYLFWDGVHPTQRAYKTI 520
>LGB3_MEDSA (P14962) Leghemoglobin-3 (Leghemoglobin III)| Length = 146 Score = 28.9 bits (63), Expect = 3.2 Identities = 16/36 (44%), Positives = 22/36 (61%) Frame = -2 Query: 253 PGHSVLVLVLVLERAPASGCSSVSFLEAGEGRGGSP 146 PG+SVL ++LE+APA+ SFL+ G SP Sbjct: 22 PGNSVLFYTIILEKAPAAK-GMFSFLKDSAGVQDSP 56
>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific| protein homolog) (Latex allergen Hev b 13) Length = 391 Score = 28.5 bits (62), Expect = 4.2 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = -3 Query: 357 ACGNPSSSLSWDGIPLTEAAYKKIADGWVNGPYFHPAI 244 +C PS ++WDG TEAA + D G + P + Sbjct: 336 SCACPSVRVNWDGAHYTEAANEYFFDQISTGAFSDPPV 373
>TAI12_MOUSE (Q8BGQ2) TGF-beta-induced apoptosis protein 12 (TAIP-12)| Length = 534 Score = 28.1 bits (61), Expect = 5.5 Identities = 16/34 (47%), Positives = 19/34 (55%) Frame = -2 Query: 268 RAVLPPGHSVLVLVLVLERAPASGCSSVSFLEAG 167 +A LPPG SVL E AS SS S+L +G Sbjct: 374 QAQLPPGSSVLCFTENSEHPAASPMSSPSYLNSG 407
>LGB1_PEA (P02233) Leghemoglobin-1 (Leghemoglobin I)| Length = 147 Score = 28.1 bits (61), Expect = 5.5 Identities = 16/36 (44%), Positives = 22/36 (61%) Frame = -2 Query: 253 PGHSVLVLVLVLERAPASGCSSVSFLEAGEGRGGSP 146 PG+S+L +VLE+APA+ SFL+ G SP Sbjct: 21 PGYSILFYTIVLEKAPAAK-GLFSFLKDTAGVEDSP 55
>TRPE_AERPE (Q9Y8T0) Anthranilate synthase component 1 (EC 4.1.3.27)| (Anthranilate synthase component I) Length = 438 Score = 28.1 bits (61), Expect = 5.5 Identities = 11/14 (78%), Positives = 13/14 (92%) Frame = +3 Query: 147 GDPPLPSPASRKET 188 GD PLP+PASRKE+ Sbjct: 145 GDTPLPAPASRKES 158
>LGB2_MEDTR (P27993) Leghemoglobin 2| Length = 146 Score = 28.1 bits (61), Expect = 5.5 Identities = 16/36 (44%), Positives = 22/36 (61%) Frame = -2 Query: 253 PGHSVLVLVLVLERAPASGCSSVSFLEAGEGRGGSP 146 PG+SVL ++LE+APA+ SFL+ G SP Sbjct: 22 PGNSVLFYTIILEKAPAAK-GMFSFLKDTAGVQDSP 56
>AROA_AERPE (Q9YEK9) Probable 3-phosphoshikimate 1-carboxyvinyltransferase (EC| 2.5.1.19) (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS) Length = 427 Score = 27.7 bits (60), Expect = 7.1 Identities = 16/41 (39%), Positives = 18/41 (43%) Frame = -2 Query: 361 VGVRQPVVVAELGRHPPDGGGVQEDRRRLGQRAVLPPGHSV 239 +G R+PV V R P G ED RLG R G V Sbjct: 387 LGARRPVAVEGFSRVPDSYPGFLEDLARLGARVEAVKGGGV 427
>CAC1A_HUMAN (O00555) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2505 Score = 27.7 bits (60), Expect = 7.1 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +3 Query: 132 VNKNNGDPPLPSPASRKETEEQPDAG 209 VNKN PLP K+ EE+ D G Sbjct: 1186 VNKNANPDPLPKKEEEKKEEEEDDRG 1211
>CAC1A_RAT (P54282) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide, isoform 4) (Brain calcium channel I) (BI) (RAT brain class A) (RBA-I) Length = 2212 Score = 27.7 bits (60), Expect = 7.1 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +3 Query: 132 VNKNNGDPPLPSPASRKETEEQPDAG 209 VNKN PLP K+ EE+ D G Sbjct: 1137 VNKNANPDPLPKKEEEKKEEEEADPG 1162
>CAC1A_MOUSE (P97445) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2164 Score = 27.7 bits (60), Expect = 7.1 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +3 Query: 132 VNKNNGDPPLPSPASRKETEEQPDAG 209 VNKN PLP K+ EE+ D G Sbjct: 1089 VNKNANPDPLPKKEEEKKEEEEADPG 1114
>FCGRN_RAT (P13599) IgG receptor FcRn large subunit p51 precursor (FcRn)| (Neonatal Fc receptor) (IgG Fc fragment receptor transporter, alpha chain) Length = 366 Score = 27.3 bits (59), Expect = 9.3 Identities = 9/22 (40%), Positives = 16/22 (72%) Frame = -1 Query: 203 VGLFLGFLPRSWGGEGRIPIIF 138 + L L LP++WG E R+P+++ Sbjct: 10 LSLLLVLLPQTWGAEPRLPLMY 31 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,014,463 Number of Sequences: 219361 Number of extensions: 842935 Number of successful extensions: 2744 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2681 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2742 length of database: 80,573,946 effective HSP length: 98 effective length of database: 59,076,568 effective search space used: 1417837632 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
