ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet125e01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PGRP3_HOLDI (Q765P2) Peptidoglycan-recognition protein 3 precurs... 30 1.9
2YFK9_YEAST (P43611) Hypothetical 59.4 kDa protein in CDC26-SAP15... 29 3.2
3FINC_PLEWA (Q91289) Fibronectin (FN) (Fragment) 28 5.5
4ASSY_ARATH (Q9SZX3) Argininosuccinate synthase, chloroplast prec... 28 5.5
5CWC22_YARLI (Q6C8C5) Pre-mRNA-splicing factor CWC22 28 5.5
6R1B12_SOLDE (Q6L3Z4) Putative late blight resistance protein hom... 27 9.3
7PAC1_YEAST (P39946) Protein PAC1 (LIS-1 homolog) 27 9.3

>PGRP3_HOLDI (Q765P2) Peptidoglycan-recognition protein 3 precursor (Hd-PGRP-3)|
          Length = 187

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
 Frame = +1

Query: 169 APKVAPQNESMEFARL*HLIYP-------CTMSQVYSHERSMHVARRGDLGEMYVLNGDH 327
           A KV P  + +++  + H   P       C+   VY   R M+     D+G  +++ GD 
Sbjct: 35  ARKVEPTTKPLKYVIINHTSGPSCVDEIDCSRMLVYIQNRHMNHLNYNDIGCNFIIGGDG 94

Query: 328 VMYSG 342
            +Y G
Sbjct: 95  QIYEG 99



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>YFK9_YEAST (P43611) Hypothetical 59.4 kDa protein in CDC26-SAP155 intergenic|
           region
          Length = 510

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -3

Query: 120 RYNNIEINRVMELFFRFSI-ILSLMRL-ELCTRIH 22
           RY N  + R+M  F+RF   I S +RL ELC  +H
Sbjct: 78  RYPNSSLKRIMGYFYRFWYNIFSFLRLNELCCSLH 112



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>FINC_PLEWA (Q91289) Fibronectin (FN) (Fragment)|
          Length = 1328

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 198 NGICKIVTPDLPLYYVTGLQP*T 266
           N I + ++PDL  Y +TGLQP T
Sbjct: 792 NPIQRTISPDLRTYVITGLQPGT 814



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>ASSY_ARATH (Q9SZX3) Argininosuccinate synthase, chloroplast precursor (EC|
           6.3.4.5) (Citrulline--aspartate ligase)
          Length = 494

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 12/44 (27%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = +1

Query: 175 KVAPQNESMEFARL*HLIYPCTMSQVYSHERSM-HVARRGDLGE 303
           ++  + +++E+A+  ++  P T   +YS +R++ H++  GDL E
Sbjct: 243 EIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDLLE 286



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>CWC22_YARLI (Q6C8C5) Pre-mRNA-splicing factor CWC22|
          Length = 954

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 357 HMCTPATVHDMITIQHIHLT*VTPTRH 277
           H+C     H+++ +Q +HL   TPT H
Sbjct: 323 HLCNYHVAHEVLVLQLLHLLLETPTDH 349



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>R1B12_SOLDE (Q6L3Z4) Putative late blight resistance protein homolog R1B-12|
          Length = 1296

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 363  YLHMCTPATVHDMITIQHIHL 301
            YL +  P TV DM+ ++H+H+
Sbjct: 984  YLRLLQPNTVWDMVKLRHLHI 1004



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>PAC1_YEAST (P39946) Protein PAC1 (LIS-1 homolog)|
          Length = 494

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
 Frame = -2

Query: 181 LLWVPS*SLSCMRTLTGTVQQVQQHRDQPC------HGVIFSLQHYFVTHEIGIVHSHT 23
           L W+P    SC+  +  +V  V+ H + P       HG +++   +  T  +  + SHT
Sbjct: 140 LKWIPRNLPSCLINVESSVTSVKLHPNLPIVFVATDHGKLYAFDLFNYTIPLASLQSHT 198


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,163,235
Number of Sequences: 219361
Number of extensions: 850842
Number of successful extensions: 1657
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1657
length of database: 80,573,946
effective HSP length: 98
effective length of database: 59,076,568
effective search space used: 1417837632
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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