ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet125a03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY589584.1| Triticum aestivum alpha-expansin EXPA2 mRNA, comp... 145 8e-32
2gb|AY543529.1| Triticum aestivum expansin EXPA3 mRNA, complete cds 137 2e-29
3emb|AJ276007.1|FPR276007 Festuca pratensis partial mRNA for expa... 52 0.001
4gb|AF332169.1| Zea mays alpha-expansin (expA1) mRNA, complete cds 46 0.057
5gb|AY104146.1| Zea mays PCO064861 mRNA sequence 46 0.057
6dbj|AB022221.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 44 0.22
7gb|AC126930.4| Mus musculus BAC clone RP24-547J4 from 8, complet... 44 0.22
8emb|AL008718.23|HS268H5 Human DNA sequence from clone CTA-268H5 ... 42 0.88
9gb|AC147331.3| Pan troglodytes BAC clone RP43-10H17 from 7, comp... 40 3.5
10gb|AC166368.3| Mus musculus BAC clone RP23-63I1 from chromosome ... 40 3.5
11gb|AC006043.1| Homo sapiens BAC clone RP11-538D15 from 7, comple... 40 3.5
12gb|AC141566.4| Mus musculus BAC clone RP23-89G14 from chromosome... 40 3.5
13gb|AC126442.4| Mus musculus BAC clone RP23-453M12 from chromosom... 40 3.5
14gb|AC155315.6| Mus musculus BAC clone RP23-212F18 from chromosom... 40 3.5
15gb|AC142289.1| Pan troglodytes BAC clone RP43-179F19 from 7, com... 40 3.5
16emb|AL359831.9| Human DNA sequence from clone RP11-251L4 on chro... 40 3.5
17emb|AL161447.20| Human DNA sequence from clone RP11-379P1 on chr... 40 3.5
18gb|AC128707.2| Homo sapiens 12 BAC RP11-38F22 (Roswell Park Canc... 40 3.5
19gb|AC073608.19| Homo sapiens 12 BAC RP11-36P3 (Roswell Park Canc... 40 3.5
20gb|AC152449.4| Mus musculus BAC clone RP24-560O24 from chromosom... 40 3.5
21gb|AC124067.10| Homo sapiens chromosome 8, clone RP11-150O12, co... 40 3.5
22dbj|AB006700.2| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 3.5
23gb|AC149278.3| Mus musculus BAC clone RP24-101G17 from 7, comple... 40 3.5
24gb|AF064362.1|AF064362 Herpetomonas samuelpessoai clone her17 ki... 40 3.5
25dbj|AP006302.1| Homo sapiens genomic DNA, chromosome 8 clone:RP1... 40 3.5
26gb|AC127270.4| Mus musculus BAC clone RP23-453E16 from 12, compl... 40 3.5
27emb|AL669980.9| Mouse DNA sequence from clone RP23-218C2 on chro... 40 3.5
28emb|AL807385.11| Mouse DNA sequence from clone RP23-143B14 on ch... 40 3.5
29dbj|AP000068.1| Homo sapiens genomic DNA, chromosome 8p11.2, sen... 40 3.5 
>gb|AY589584.1| Triticum aestivum alpha-expansin EXPA2 mRNA, complete cds
          Length = 1142

 Score =  145 bits (73), Expect = 8e-32
 Identities = 187/223 (83%), Gaps = 14/223 (6%)
 Strand = Plus / Minus

                                                                        
Query: 52   gcaacaagataagttacaagatactctcacacaccacacaccattccatgcatgtattac 111
            ||||||| | ||||||||||| |||||||||||||||       ||||||||||| |  |
Sbjct: 1129 gcaacaacagaagttacaagacactctcacacaccac-------tccatgcatgtgtacc 1077

                                                                        
Query: 112  t-aaaagtacacttaaatagatcaccttgcggtgtttccacaacacaaggctacactaac 170
            |  |||| || |||||||| ||||||||||| ||||| |||||| |||||| ||||||||
Sbjct: 1076 tctaaagcacccttaaataaatcaccttgcgatgttttcacaacgcaaggccacactaac 1017

                                                                        
Query: 171  aatgatcaaaatgctcagcttcacaa----tgataacttatttatctctacgataatgtc 226
            ||||||||||||||||| || |||||    | ||||||||||||| |||||  || ||| 
Sbjct: 1016 aatgatcaaaatgctcaactccacaataagtaataacttatttatgtctac--tactgtg 959

                                                       
Query: 227  ctactagcatgagagaaggaaaggcctaagcgggtgctgatca 269
            ||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 958  ctactagtatgagagaagggaaggcctaagcgggtgctgatca 916
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>gb|AY543529.1| Triticum aestivum expansin EXPA3 mRNA, complete cds
          Length = 1106

 Score =  137 bits (69), Expect = 2e-29
 Identities = 161/189 (85%), Gaps = 7/189 (3%)
 Strand = Plus / Minus

                                                                        
Query: 86   cacacaccattccatgcatgtattacta-aaagtacacttaaatagatcaccttgcggtg 144
            ||||||||| ||||||||||| |  ||  |||| || |||||||| ||||||||||| ||
Sbjct: 1105 cacacaccactccatgcatgtgtacctctaaagcacccttaaataaatcaccttgcgatg 1046

                                                                        
Query: 145  tttccacaacacaaggctacactaacaatgatcaaaatgctcagcttcacaa----tgat 200
            ||| |||||| |||||| |||||||||||||||||||||| || || |||||    | ||
Sbjct: 1045 ttttcacaacgcaaggccacactaacaatgatcaaaatgcacaactccacaataagtaat 986

                                                                        
Query: 201  aacttatttatctctacgataatgtcctactagcatgagagaaggaaaggcctaagcggg 260
            ||||||||||| |||||  || ||| ||||||| ||||||||||| ||||||||||||||
Sbjct: 985  aacttatttatgtctac--tactgtgctactagtatgagagaagggaaggcctaagcggg 928

                     
Query: 261  tgctgatca 269
            |||||||||
Sbjct: 927  tgctgatca 919
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>emb|AJ276007.1|FPR276007 Festuca pratensis partial mRNA for expansin (exp2 gene)
          Length = 1248

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                             
Query: 236 tgagagaaggaaaggcctaagcgggtgctgatca 269
           |||||||||| |||||| ||||||||||||||||
Sbjct: 998 tgagagaagggaaggcccaagcgggtgctgatca 965



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                         
Query: 44   gttacaacgcaacaagataagttacaagatactctcacacaccac 88
            ||||||||| ||||| | ||||||||||| |||| ||||||||||
Sbjct: 1174 gttacaacgtaacaacaaaagttacaagaaactcacacacaccac 1130
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>gb|AF332169.1| Zea mays alpha-expansin (expA1) mRNA, complete cds
          Length = 1090

 Score = 46.1 bits (23), Expect = 0.057
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 238 agagaaggaaaggcctaagcgggtgct 264
           ||||||||||| |||||||||||||||
Sbjct: 956 agagaaggaaatgcctaagcgggtgct 930
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>gb|AY104146.1| Zea mays PCO064861 mRNA sequence
          Length = 1106

 Score = 46.1 bits (23), Expect = 0.057
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 238 agagaaggaaaggcctaagcgggtgct 264
           ||||||||||| |||||||||||||||
Sbjct: 973 agagaaggaaatgcctaagcgggtgct 947
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>dbj|AB022221.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSD23
          Length = 33479

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 104   tgtattactaaaagtacactta 125
             ||||||||||||||||||||||
Sbjct: 30769 tgtattactaaaagtacactta 30748
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>gb|AC126930.4| Mus musculus BAC clone RP24-547J4 from 8, complete sequence
          Length = 191241

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 73     tactctcacacaccacacacca 94
              ||||||||||||||||||||||
Sbjct: 108235 tactctcacacaccacacacca 108214
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>emb|AL008718.23|HS268H5 Human DNA sequence from clone CTA-268H5 on chromosome 22q13.2-13.3,
              complete sequence
          Length = 188833

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 74     actctcacacaccacacacca 94
              |||||||||||||||||||||
Sbjct: 113585 actctcacacaccacacacca 113565



 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 74     actctcacacaccacacacca 94
              |||||||||||||||||||||
Sbjct: 113445 actctcacacaccacacacca 113425
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>gb|AC147331.3| Pan troglodytes BAC clone RP43-10H17 from 7, complete sequence
          Length = 189220

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 186    cagcttcacaatgataacttattt 209
              |||||||||||| |||||||||||
Sbjct: 185625 cagcttcacaataataacttattt 185602
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>gb|AC166368.3| Mus musculus BAC clone RP23-63I1 from chromosome 7, complete sequence
          Length = 242362

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 142    gtgtttccacaacacaaggc 161
              ||||||||||||||||||||
Sbjct: 235847 gtgtttccacaacacaaggc 235828



 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 142    gtgtttccacaacacaaggc 161
              ||||||||||||||||||||
Sbjct: 153446 gtgtttccacaacacaaggc 153465



 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 142   gtgtttccacaacacaaggc 161
             ||||||||||||||||||||
Sbjct: 75869 gtgtttccacaacacaaggc 75850
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>gb|AC006043.1| Homo sapiens BAC clone RP11-538D15 from 7, complete sequence
          Length = 189036

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 186   cagcttcacaatgataacttattt 209
             |||||||||||| |||||||||||
Sbjct: 17638 cagcttcacaataataacttattt 17615
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>gb|AC141566.4| Mus musculus BAC clone RP23-89G14 from chromosome 7, complete sequence
          Length = 236600

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 75     ctctcacacaccacacacca 94
              ||||||||||||||||||||
Sbjct: 167327 ctctcacacaccacacacca 167346
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>gb|AC126442.4| Mus musculus BAC clone RP23-453M12 from chromosome 7, complete sequence
          Length = 204287

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 75     ctctcacacaccacacacca 94
              ||||||||||||||||||||
Sbjct: 139261 ctctcacacaccacacacca 139242
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>gb|AC155315.6| Mus musculus BAC clone RP23-212F18 from chromosome 7, complete sequence
          Length = 210212

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 142    gtgtttccacaacacaaggc 161
              ||||||||||||||||||||
Sbjct: 142647 gtgtttccacaacacaaggc 142666
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>gb|AC142289.1| Pan troglodytes BAC clone RP43-179F19 from 7, complete sequence
          Length = 182617

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 186    cagcttcacaatgataacttattt 209
              |||||||||||| |||||||||||
Sbjct: 154711 cagcttcacaataataacttattt 154734
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>emb|AL359831.9| Human DNA sequence from clone RP11-251L4 on chromosome 13, complete
             sequence
          Length = 65321

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 76    tctcacacaccacacaccat 95
             ||||||||||||||||||||
Sbjct: 32461 tctcacacaccacacaccat 32442
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>emb|AL161447.20| Human DNA sequence from clone RP11-379P1 on chromosome 9 Contains the
             3' end of a novel gene (FLJ21613) similar to rat corneal
             wound healing related protein (includes FLJ22634), the
             GOLPH2 gene for golgi phosphoprotein 2 (GP73), a novel
             pseudogene and a CpG island, complete sequence
          Length = 160115

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 81    cacaccacacaccattccat 100
             ||||||||||||||||||||
Sbjct: 74665 cacaccacacaccattccat 74684
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>gb|AC128707.2| Homo sapiens 12 BAC RP11-38F22 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 121538

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 162    tacactaacaatgatcaaaa 181
              ||||||||||||||||||||
Sbjct: 120713 tacactaacaatgatcaaaa 120732
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>gb|AC073608.19| Homo sapiens 12 BAC RP11-36P3 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 111182

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 162    tacactaacaatgatcaaaa 181
              ||||||||||||||||||||
Sbjct: 110015 tacactaacaatgatcaaaa 109996
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>gb|AC152449.4| Mus musculus BAC clone RP24-560O24 from chromosome 7, complete sequence
          Length = 166134

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 142   gtgtttccacaacacaaggc 161
             ||||||||||||||||||||
Sbjct: 65382 gtgtttccacaacacaaggc 65401
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>gb|AC124067.10| Homo sapiens chromosome 8, clone RP11-150O12, complete sequence
          Length = 179201

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 79     cacacaccacacaccattccatgc 102
              |||||||||||||| |||||||||
Sbjct: 111543 cacacaccacacacaattccatgc 111520
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>dbj|AB006700.2| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHF15
          Length = 83865

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 85   ccacacaccattccatgcat 104
            ||||||||||||||||||||
Sbjct: 4595 ccacacaccattccatgcat 4614
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>gb|AC149278.3| Mus musculus BAC clone RP24-101G17 from 7, complete sequence
          Length = 194766

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 142    gtgtttccacaacacaaggc 161
              ||||||||||||||||||||
Sbjct: 161693 gtgtttccacaacacaaggc 161674



 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 142   gtgtttccacaacacaaggc 161
             ||||||||||||||||||||
Sbjct: 79293 gtgtttccacaacacaaggc 79312



 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 142  gtgtttccacaacacaaggc 161
            ||||||||||||||||||||
Sbjct: 1708 gtgtttccacaacacaaggc 1689
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>gb|AF064362.1|AF064362 Herpetomonas samuelpessoai clone her17 kinetoplast minicircle DNA,
           partial sequence
          Length = 641

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 81  cacaccacacaccattccat 100
           ||||||||||||||||||||
Sbjct: 381 cacaccacacaccattccat 400
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>dbj|AP006302.1| Homo sapiens genomic DNA, chromosome 8 clone:RP11-150O12, complete
             sequence
          Length = 179216

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 79    cacacaccacacaccattccatgc 102
             |||||||||||||| |||||||||
Sbjct: 67670 cacacaccacacacaattccatgc 67693
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>gb|AC127270.4| Mus musculus BAC clone RP23-453E16 from 12, complete sequence
          Length = 181004

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 79     cacacaccacacaccattcc 98
              ||||||||||||||||||||
Sbjct: 141400 cacacaccacacaccattcc 141419
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>emb|AL669980.9| Mouse DNA sequence from clone RP23-218C2 on chromosome 4, complete
              sequence
          Length = 157624

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 75     ctctcacacaccacacacca 94
              ||||||||||||||||||||
Sbjct: 155597 ctctcacacaccacacacca 155616
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>emb|AL807385.11| Mouse DNA sequence from clone RP23-143B14 on chromosome 4, complete
              sequence
          Length = 221319

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 75     ctctcacacaccacacacca 94
              ||||||||||||||||||||
Sbjct: 173309 ctctcacacaccacacacca 173290
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>dbj|AP000068.1| Homo sapiens genomic DNA, chromosome 8p11.2, senescence gene region,
             section 4/19
          Length = 100000

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 79    cacacaccacacaccattccatgc 102
             |||||||||||||| |||||||||
Sbjct: 52361 cacacaccacacacaattccatgc 52338


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,535,424
Number of Sequences: 3902068
Number of extensions: 2535424
Number of successful extensions: 74066
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73988
Number of HSP's gapped (non-prelim): 74
length of query: 269
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 247
effective length of database: 17,147,199,772
effective search space: 4235358343684
effective search space used: 4235358343684
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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