>TSSC4_MOUSE (Q9JHE7) Protein TSSC4|
          Length = 317

 Score = 30.8 bits (68), Expect = 0.94
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 124 YRRPHLPYPRPSSSGDRRIHGRSNATLLLMDGDYMEHSE 240
           +RRP  P  +  + G  R+HG +  T +L   DY+ H E
Sbjct: 119 FRRPVTPPSQTPARGLSRVHGNTGPTRVLPVPDYVSHPE 157

>ATG3_EMENI (Q5AVG2) Autophagy-related protein 3 (Autophagy-related E2-like|
           conjugation enzyme atg3)
          Length = 787

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 8   DETYITHDLNVTRSKQKNLPPAPFHIIPPHWSLFIIQYNTDAP 136
           D T  TH+    R K +++P +PF ++PP   L I  Y  D P
Sbjct: 507 DSTTPTHN----RFKLQSMPESPFLLLPPELRLQIYSYVLDIP 545

>NUKC_MESVI (Q9MUR0) NAD(P)H-quinone oxidoreductase chain K, chloroplast (EC|
           1.6.5.-) (NAD(P)H dehydrogenase, chain K)
           (NADH-plastoquinone oxidoreductase subunit K)
          Length = 247

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +3

Query: 60  IYHPLHFTLSPLTGPYLSYSTIQTPPSSLSPA 155
           I H L  +    TG YL+ S  QTPP SLS A
Sbjct: 198 IKHELTLSSPVYTGKYLNSSARQTPPRSLSEA 229

>DHX8_HUMAN (Q14562) ATP-dependent RNA helicase DHX8 (EC 3.6.1.-) (DEAH box|
           protein 8) (RNA helicase HRH1)
          Length = 1220

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +2

Query: 116 QYNTDAPIFPIPGRLPPAIDVYTDGP 193
           QY  +APIF IPGR  P   +YT  P
Sbjct: 727 QYFYEAPIFTIPGRTYPVEILYTKEP 752

>SMCA4_HUMAN (P51532) Probable global transcription activator SNF2L4 (EC|
           3.6.1.-) (ATP-dependent helicase SMARCA4) (SNF2-beta)
           (BRG-1 protein) (Mitotic growth and transcription
           activator) (Brahma protein homolog 1) (SWI/SNF-related
           matrix-associated actin
          Length = 1647

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 267 PQARRQGRPLRVLHVVPVHQKQGSIGP 187
           PQ +  G+P +   +VP+HQKQ  I P
Sbjct: 328 PQTQSPGQPAQPAPMVPLHQKQSRITP 354

>ALDH2_BACSU (P39616) Probable aldehyde dehydrogenase ywdH (EC 1.2.1.3)|
          Length = 457

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 66  HPLHFTLSPLTGPYLSYSTIQTPPSSLSPAV 158
           +PL   LSPL G   + +T+   PS  +PAV
Sbjct: 117 YPLQLALSPLIGAIAAGNTVVLKPSEYTPAV 147

>BCOR_MOUSE (Q8CGN4) BCoR protein (BCL-6 corepressor)|
          Length = 1759

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 25  TRSERDKEQTEESTTRSISHYPPSLVLIYHTVQYRRPHLPYPR 153
           T S+  K   E S   S +  PP+ + +     +R P +PYPR
Sbjct: 614 TSSKGAKANPEPSFKASENGLPPTSIFLSPNEAFRSPAIPYPR 656

>ATG26_NEUCR (Q7S1I0) Sterol 3-beta-glucosyltransferase (EC 2.4.1.173)|
           (Autophagy-related protein 26)
          Length = 1553

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 142 PYPRPSSSGDRRIHGRSNATLLLMDGDYMEHSEGTPLATRLGSV 273
           P  R  ++G  R+HG  +A      GD+M  +EG P    L S+
Sbjct: 715 PIVRQHTAGLVRLHGPHHAATTGQIGDHMAEAEGGPSTPMLQSI 758

>MINT_HUMAN (Q96T58) Msx2-interacting protein (SPEN homolog)|
           (SMART/HDAC1-associated repressor protein)
          Length = 3664

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
 Frame = +1

Query: 22  YTRSERDKEQTEESTTRSISHYPPSLVLIYHTVQYRRPHLPYPRPS------SSGDRRIH 183
           Y + ER++E+    + R   H    +      V  RRP  P   PS      S  +RR++
Sbjct: 697 YRQRERERERERFESDRDRDHERRPIERSQSPVHLRRPQSPGASPSQAERLPSDSERRLY 756

Query: 184 GRSN 195
            RS+
Sbjct: 757 SRSS 760

>OL502_MOUSE (Q8VG09) Olfactory receptor 502 (Olfactory receptor 204-8)|
          Length = 314

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 12/61 (19%)
 Frame = +3

Query: 57  RIYHPLHFTLSPLTGPYLSYSTIQTPP------------SSLSPAVFLRRSTYTRTVQCY 200
           +++HP++F LS L    + YS+  TP             S L   + L  + +  TV+C+
Sbjct: 57  QLHHPMYFFLSHLASADIGYSSSVTPNMLVNFLVERNTISYLGCGIQLGSAVFFGTVECF 116

Query: 201 L 203
           L
Sbjct: 117 L 117

>OL493_MOUSE (Q8VEW5) Olfactory receptor 493 (Olfactory receptor 204-35)|
          Length = 314

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 12/61 (19%)
 Frame = +3

Query: 57  RIYHPLHFTLSPLTGPYLSYSTIQTPP------------SSLSPAVFLRRSTYTRTVQCY 200
           +++HP++F LS L    + YS+  TP             S L   + L  + +  TV+C+
Sbjct: 57  QLHHPMYFFLSHLASVDIGYSSSVTPNMLANFLVEKNTISYLGCTIQLSLAAFCGTVECF 116

Query: 201 L 203
           L
Sbjct: 117 L 117

>OR5P2_HUMAN (Q8WZ92) Olfactory receptor 5P2 (Olfactory receptor-like protein|
           JCG3)
          Length = 322

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 12/61 (19%)
 Frame = +3

Query: 57  RIYHPLHFTLSPLTGPYLSYSTIQTP------------PSSLSPAVFLRRSTYTRTVQCY 200
           +++HP++F LS L    ++YS+  TP             S L  A+ L  + +  TV+C 
Sbjct: 50  QLHHPMYFFLSHLAFADMAYSSSVTPNMLVNFLVERNTVSYLGCAIQLGSAAFFATVECV 109

Query: 201 L 203
           L
Sbjct: 110 L 110

>CHRC_CUCSA (Q96398) Chromoplast-specific carotenoid-associated protein,|
           chloroplast precursor
          Length = 322

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 38  VTRSKQKNLPPAPFHIIPPHWSLFIIQYNTDAPIFPIPGRLPPAIDV 178
           +T+ + KN  PAP   +      +I+ Y T A +FP+  R  P + V
Sbjct: 128 ITQLESKNPTPAPTEALTLLNGKWILAYTTFAGLFPLLSRNLPLVKV 174

>UL16_VZVD (P09293) Gene 44 protein|
          Length = 363

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 38  VTRSKQKNLPPAPFHII 88
           +TR +Q NLPP  FH+I
Sbjct: 82  ITRPRQMNLPPKTFHVI 98

>MOG5_CAEEL (Q09530) Probable pre-mRNA-splicing factor ATP-dependent RNA|
           helicase mog-5 (EC 3.6.1.-) (Sex determination protein
           mog-5) (Masculinization of germ line protein 5)
          Length = 1200

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 116 QYNTDAPIFPIPGRLPPAIDVYTDGP 193
           +Y  +APIF IPGR  P   +YT  P
Sbjct: 702 EYFLEAPIFTIPGRTFPVEILYTREP 727

>SOX9_PIG (O18896) Transcription factor SOX-9|
          Length = 509

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 3/86 (3%)
 Frame = +1

Query: 19  YYTRSERDKEQTEESTTRSISHYPPSLVLIYHTVQYRRPHLPYPRPSSSGDRRIHGRSNA 198
           +Y+  ++   Q    +  ++ HY PS   I       R    Y    +SG    H RS  
Sbjct: 406 HYSEQQQHSPQQIAYSPFNLPHYSPSYPPI------TRSQYDYTDHQNSGSYYSHARSQG 459

Query: 199 TLLLMDGDYMEHSEG---TPLATRLG 267
           ++L     YM  + G   TP+A   G
Sbjct: 460 SVLYSTFTYMNPAHGPMYTPIADTSG 485

>CADH1_ARACO (P42495) Cinnamyl-alcohol dehydrogenase 1 (EC 1.1.1.195) (CAD)|
          Length = 360

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +3

Query: 60  IYHPL--HFTLSPLTGPYLSYSTIQTPPSSLSPAVFLRRSTYT 182
           ++HPL  + +L  L G  +    I TP   +SP V L R   T
Sbjct: 255 VFHPLEPYLSLLKLDGKLILMGVINTPLQFISPMVMLGRKAIT 297

>DHX16_CAEEL (O45244) Probable pre-mRNA-splicing factor ATP-dependent RNA|
           helicase mog-4 (EC 3.6.1.-) (Sex determination protein
           mog-4) (Masculinization of germ line protein 4)
          Length = 1008

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = +2

Query: 128 DAPIFPIPGRLPPAIDVYTDGP 193
           DAPIF IPGR  P    YT  P
Sbjct: 531 DAPIFRIPGRRFPVDIYYTQAP 552

>WRK62_ARATH (Q9LZV6) Probable WRKY transcription factor 62 (WRKY DNA-binding|
           protein 62)
          Length = 263

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
 Frame = +1

Query: 28  RSERDKEQTEESTTRSISH-YPPSLVLIYHTVQYR--RPHLPYPRPSS----SGDRRIHG 186
           ++E D     E   +S+ H +  +L ++  T  ++  + +   P+ SS    S  + +H 
Sbjct: 27  QTESDSSMEREDLAKSVLHCFSDALSILIDTNDHQDDQSNNSSPQDSSPVLESSRKPLHK 86

Query: 187 RSNATLLLMDGDYMEHSEGTPL 252
           R   T +    DY  H   TP+
Sbjct: 87  RGRKTSMAESSDYHRHESSTPI 108

>OL482_MOUSE (Q8VG03) Olfactory receptor 482 (Olfactory receptor 204-14)|
          Length = 323

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +3

Query: 57  RIYHPLHFTLSPLTGPYLSYSTIQTPPSSLSPAVFLRRSTYTRTVQCYLAF 209
           +++HP++F LS L    L YS+  TP   ++   FL  +     + C + F
Sbjct: 57  QLHHPMYFFLSHLASVDLGYSSSVTPNMLIN---FLAENNTISYIGCSIQF 104

>TBP_XENLA (P27633) TATA-box-binding protein (TATA-box factor) (TATA-binding|
           factor) (TATA sequence-binding protein) (Transcription
           initiation factor TFIID TBP subunit)
          Length = 297

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 45  GANRRIYHPLHFTLSPLTGPYLSYSTIQTPPSSLSPA 155
           G   +++HP   T +PL G    Y +  TP + +SPA
Sbjct: 74  GQTPQLFHPQTLTTAPLPGNTPLYPSPITPMTPISPA 110


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,363,497
Number of Sequences: 219361
Number of extensions: 808669
Number of successful extensions: 2550
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2548
length of database: 80,573,946
effective HSP length: 67
effective length of database: 65,876,759
effective search space used: 1581042216
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)