ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet124g04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_468939.1| Oryza sativa (japonica cultivar-group), mRNA 115 8e-23
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 115 8e-23
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 115 8e-23
4gb|AC137925.2| Oryza sativa chromosome 3 BAC OSJNBb0047D08 genom... 115 8e-23
5gb|AC135226.4| Oryza sativa chromosome 3 BAC OSJNBa0037J17 genom... 115 8e-23
6dbj|AK119178.1| Oryza sativa (japonica cultivar-group) cDNA clon... 115 8e-23
7dbj|AK065820.1| Oryza sativa (japonica cultivar-group) cDNA clon... 115 8e-23
8dbj|AK060924.1| Oryza sativa (japonica cultivar-group) cDNA clon... 115 8e-23
9gb|BT019227.1| Zea mays clone Contig900.F mRNA sequence 74 3e-10
10gb|AY107457.1| Zea mays PCO103582 mRNA sequence 74 3e-10
11emb|CR391913.7| Zebrafish DNA sequence from clone DKEY-118P6 in ... 48 0.016
12ref|XM_736739.1| Plasmodium chabaudi chabaudi hypothetical prote... 44 0.24
13gb|AC107065.5| Bos taurus clone rp42-513g13, complete sequence 42 0.96
14emb|CR974592.5| Mouse DNA sequence from clone RP23-56C15 on chro... 42 0.96
15gb|AF246683.1| Pemphigus spyrothecae microsatellite 98PS12 sequence 40 3.8
16gb|AC146500.2| Danio rerio clone CH211-130P22, complete sequence 40 3.8
17emb|CR392003.9| Zebrafish DNA sequence from clone DKEY-242N9 in ... 40 3.8
18emb|Z68338.1|CET24B8 Caenorhabditis elegans Cosmid T24B8, comple... 40 3.8
19ref|XM_948126.1| Theileria annulata strain Ankara hypothetical p... 40 3.8
20emb|AL358034.18| Human DNA sequence from clone RP11-51K14 on chr... 40 3.8
21emb|BX537121.4| Zebrafish DNA sequence from clone CH211-196P24 i... 40 3.8
22emb|AL928727.8| Zebrafish DNA sequence from clone CH211-130P8 in... 40 3.8
23gb|AC140192.3| Mus musculus BAC clone RP24-377O11 from 6, comple... 40 3.8
24gb|AC140466.3| Mus musculus BAC clone RP24-392F9 from 6, complet... 40 3.8
25emb|AL844193.6| Zebrafish DNA sequence from clone DKEY-28J3, com... 40 3.8 
>ref|XM_468939.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 981

 Score =  115 bits (58), Expect = 8e-23
 Identities = 118/138 (85%)
 Strand = Plus / Minus

                                                                       
Query: 144 atttccataactcctccatcggaagtccacgctctgcagccacatctgagaactgtctca 203
           ||||||||| || |||||| ||||| || ||||||||||| |||||   |||||| ||||
Sbjct: 979 atttccatagctgctccattggaagcccgcgctctgcagcaacatccttgaactgcctca 920

                                                                       
Query: 204 tcatctgcgtcgccttgacggtagcccttgcattgttgagaggattcttgcttcgcagct 263
           |||| || |||||||||| |||||| |||||||||||||| || |||||||| | |||||
Sbjct: 919 tcatttgggtcgccttgatggtagctcttgcattgttgagggggttcttgctcctcagct 860

                             
Query: 264 gcttcccaagagcatttt 281
           | ||||| ||||||||||
Sbjct: 859 gtttccccagagcatttt 842
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  115 bits (58), Expect = 8e-23
 Identities = 118/138 (85%)
 Strand = Plus / Plus

                                                                            
Query: 144      atttccataactcctccatcggaagtccacgctctgcagccacatctgagaactgtctca 203
                ||||||||| || |||||| ||||| || ||||||||||| |||||   |||||| ||||
Sbjct: 19225001 atttccatagctgctccattggaagcccgcgctctgcagcaacatccttgaactgcctca 19225060

                                                                            
Query: 204      tcatctgcgtcgccttgacggtagcccttgcattgttgagaggattcttgcttcgcagct 263
                |||| || |||||||||| |||||| |||||||||||||| || |||||||| | |||||
Sbjct: 19225061 tcatttgggtcgccttgatggtagctcttgcattgttgagggggttcttgctcctcagct 19225120

                                  
Query: 264      gcttcccaagagcatttt 281
                | ||||| ||||||||||
Sbjct: 19225121 gtttccccagagcatttt 19225138
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  115 bits (58), Expect = 8e-23
 Identities = 118/138 (85%)
 Strand = Plus / Plus

                                                                            
Query: 144      atttccataactcctccatcggaagtccacgctctgcagccacatctgagaactgtctca 203
                ||||||||| || |||||| ||||| || ||||||||||| |||||   |||||| ||||
Sbjct: 19219042 atttccatagctgctccattggaagcccgcgctctgcagcaacatccttgaactgcctca 19219101

                                                                            
Query: 204      tcatctgcgtcgccttgacggtagcccttgcattgttgagaggattcttgcttcgcagct 263
                |||| || |||||||||| |||||| |||||||||||||| || |||||||| | |||||
Sbjct: 19219102 tcatttgggtcgccttgatggtagctcttgcattgttgagggggttcttgctcctcagct 19219161

                                  
Query: 264      gcttcccaagagcatttt 281
                | ||||| ||||||||||
Sbjct: 19219162 gtttccccagagcatttt 19219179
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>gb|AC137925.2| Oryza sativa chromosome 3 BAC OSJNBb0047D08 genomic sequence,
            complete sequence
          Length = 140507

 Score =  115 bits (58), Expect = 8e-23
 Identities = 118/138 (85%)
 Strand = Plus / Plus

                                                                        
Query: 144  atttccataactcctccatcggaagtccacgctctgcagccacatctgagaactgtctca 203
            ||||||||| || |||||| ||||| || ||||||||||| |||||   |||||| ||||
Sbjct: 9162 atttccatagctgctccattggaagcccgcgctctgcagcaacatccttgaactgcctca 9221

                                                                        
Query: 204  tcatctgcgtcgccttgacggtagcccttgcattgttgagaggattcttgcttcgcagct 263
            |||| || |||||||||| |||||| |||||||||||||| || |||||||| | |||||
Sbjct: 9222 tcatttgggtcgccttgatggtagctcttgcattgttgagggggttcttgctcctcagct 9281

                              
Query: 264  gcttcccaagagcatttt 281
            | ||||| ||||||||||
Sbjct: 9282 gtttccccagagcatttt 9299
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>gb|AC135226.4| Oryza sativa chromosome 3 BAC OSJNBa0037J17 genomic sequence, complete
             sequence
          Length = 150137

 Score =  115 bits (58), Expect = 8e-23
 Identities = 118/138 (85%)
 Strand = Plus / Minus

                                                                         
Query: 144   atttccataactcctccatcggaagtccacgctctgcagccacatctgagaactgtctca 203
             ||||||||| || |||||| ||||| || ||||||||||| |||||   |||||| ||||
Sbjct: 18461 atttccatagctgctccattggaagcccgcgctctgcagcaacatccttgaactgcctca 18402

                                                                         
Query: 204   tcatctgcgtcgccttgacggtagcccttgcattgttgagaggattcttgcttcgcagct 263
             |||| || |||||||||| |||||| |||||||||||||| || |||||||| | |||||
Sbjct: 18401 tcatttgggtcgccttgatggtagctcttgcattgttgagggggttcttgctcctcagct 18342

                               
Query: 264   gcttcccaagagcatttt 281
             | ||||| ||||||||||
Sbjct: 18341 gtttccccagagcatttt 18324
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>dbj|AK119178.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-G07, full
            insert sequence
          Length = 1281

 Score =  115 bits (58), Expect = 8e-23
 Identities = 118/138 (85%)
 Strand = Plus / Minus

                                                                        
Query: 144  atttccataactcctccatcggaagtccacgctctgcagccacatctgagaactgtctca 203
            ||||||||| || |||||| ||||| || ||||||||||| |||||   |||||| ||||
Sbjct: 1028 atttccatagctgctccattggaagcccgcgctctgcagcaacatccttgaactgcctca 969

                                                                        
Query: 204  tcatctgcgtcgccttgacggtagcccttgcattgttgagaggattcttgcttcgcagct 263
            |||| || |||||||||| |||||| |||||||||||||| || |||||||| | |||||
Sbjct: 968  tcatttgggtcgccttgatggtagctcttgcattgttgagggggttcttgctcctcagct 909

                              
Query: 264  gcttcccaagagcatttt 281
            | ||||| ||||||||||
Sbjct: 908  gtttccccagagcatttt 891
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>dbj|AK065820.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013042D13, full
            insert sequence
          Length = 1296

 Score =  115 bits (58), Expect = 8e-23
 Identities = 118/138 (85%)
 Strand = Plus / Minus

                                                                        
Query: 144  atttccataactcctccatcggaagtccacgctctgcagccacatctgagaactgtctca 203
            ||||||||| || |||||| ||||| || ||||||||||| |||||   |||||| ||||
Sbjct: 1034 atttccatagctgctccattggaagcccgcgctctgcagcaacatccttgaactgcctca 975

                                                                        
Query: 204  tcatctgcgtcgccttgacggtagcccttgcattgttgagaggattcttgcttcgcagct 263
            |||| || |||||||||| |||||| |||||||||||||| || |||||||| | |||||
Sbjct: 974  tcatttgggtcgccttgatggtagctcttgcattgttgagggggttcttgctcctcagct 915

                              
Query: 264  gcttcccaagagcatttt 281
            | ||||| ||||||||||
Sbjct: 914  gtttccccagagcatttt 897
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>dbj|AK060924.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-H10, full
            insert sequence
          Length = 1201

 Score =  115 bits (58), Expect = 8e-23
 Identities = 118/138 (85%)
 Strand = Plus / Minus

                                                                        
Query: 144  atttccataactcctccatcggaagtccacgctctgcagccacatctgagaactgtctca 203
            ||||||||| || |||||| ||||| || ||||||||||| |||||   |||||| ||||
Sbjct: 1038 atttccatagctgctccattggaagcccgcgctctgcagcaacatccttgaactgcctca 979

                                                                        
Query: 204  tcatctgcgtcgccttgacggtagcccttgcattgttgagaggattcttgcttcgcagct 263
            |||| || |||||||||| |||||| |||||||||||||| || |||||||| | |||||
Sbjct: 978  tcatttgggtcgccttgatggtagctcttgcattgttgagggggttcttgctcctcagct 919

                              
Query: 264  gcttcccaagagcatttt 281
            | ||||| ||||||||||
Sbjct: 918  gtttccccagagcatttt 901
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>gb|BT019227.1| Zea mays clone Contig900.F mRNA sequence
          Length = 584

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 115/141 (81%)
 Strand = Plus / Plus

                                                                       
Query: 141 atcatttccataactcctccatcggaagtccacgctctgcagccacatctgagaactgtc 200
           |||||||||| | ||||||||| ||||  ||||||||  |||| |||||   ||||||  
Sbjct: 272 atcatttccacagctcctccattggaataccacgctcctcagcgacatccttgaactgct 331

                                                                       
Query: 201 tcatcatctgcgtcgccttgacggtagcccttgcattgttgagaggattcttgcttcgca 260
           |||||||||||||||||||||  || || |  || ||||| || || |||||||| ||||
Sbjct: 332 tcatcatctgcgtcgccttgatagtggctcgggcgttgttcagggggttcttgctgcgca 391

                                
Query: 261 gctgcttcccaagagcatttt 281
           ||||||| || ||||||||||
Sbjct: 392 gctgcttgcccagagcatttt 412
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>gb|AY107457.1| Zea mays PCO103582 mRNA sequence
          Length = 840

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 115/141 (81%)
 Strand = Plus / Minus

                                                                       
Query: 141 atcatttccataactcctccatcggaagtccacgctctgcagccacatctgagaactgtc 200
           |||||||||| | ||||||||| ||||  ||||||||  |||| |||||   ||||||  
Sbjct: 576 atcatttccacagctcctccattggaataccacgctcctcagcgacatccttgaactgct 517

                                                                       
Query: 201 tcatcatctgcgtcgccttgacggtagcccttgcattgttgagaggattcttgcttcgca 260
           |||||||||||||||||||||  || || |  || ||||| || || |||||||| ||||
Sbjct: 516 tcatcatctgcgtcgccttgatagtggctcgagcgttgttcagggggttcttgctgcgca 457

                                
Query: 261 gctgcttcccaagagcatttt 281
           ||||||| || ||||||||||
Sbjct: 456 gctgcttgcccagagcatttt 436
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>emb|CR391913.7| Zebrafish DNA sequence from clone DKEY-118P6 in linkage group 5,
             complete sequence
          Length = 190731

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 144   atttccataactcctccatcggaa 167
             ||||||||||||||||||||||||
Sbjct: 57705 atttccataactcctccatcggaa 57682
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>ref|XM_736739.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000305.01.0)
            partial mRNA
          Length = 2391

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 129  tgattttgtttcatcatttcca 150
            ||||||||||||||||||||||
Sbjct: 1296 tgattttgtttcatcatttcca 1275
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>gb|AC107065.5| Bos taurus clone rp42-513g13, complete sequence
          Length = 175949

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 176   tctgcagccacatctgagaac 196
             |||||||||||||||||||||
Sbjct: 66674 tctgcagccacatctgagaac 66694
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>emb|CR974592.5| Mouse DNA sequence from clone RP23-56C15 on chromosome 12, complete
             sequence
          Length = 201549

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 127   aatgattttgtttcatcattt 147
             |||||||||||||||||||||
Sbjct: 34394 aatgattttgtttcatcattt 34374
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>gb|AF246683.1| Pemphigus spyrothecae microsatellite 98PS12 sequence
          Length = 650

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 53  aatatatagatacaacagga 72
           ||||||||||||||||||||
Sbjct: 543 aatatatagatacaacagga 524
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>gb|AC146500.2| Danio rerio clone CH211-130P22, complete sequence
          Length = 165269

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 121   cagtttaatgattttgtttcatcatttc 148
             ||||||| |||||||| |||||||||||
Sbjct: 88282 cagtttagtgattttgcttcatcatttc 88309
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>emb|CR392003.9| Zebrafish DNA sequence from clone DKEY-242N9 in linkage group 3,
             complete sequence
          Length = 182043

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 121   cagtttaatgattttgtttcatcatttc 148
             ||||||| |||||||| |||||||||||
Sbjct: 99499 cagtttagtgattttgcttcatcatttc 99472
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>emb|Z68338.1|CET24B8 Caenorhabditis elegans Cosmid T24B8, complete sequence
          Length = 38779

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 122   agtttaatgattttgtttca 141
             ||||||||||||||||||||
Sbjct: 15035 agtttaatgattttgtttca 15054
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>ref|XM_948126.1| Theileria annulata strain Ankara hypothetical protein (TA09090)
            partial mRNA
          Length = 1365

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 128  atgattttgtttcatcatttccat 151
            |||| |||||||||||||||||||
Sbjct: 1115 atgaatttgtttcatcatttccat 1138
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>emb|AL358034.18| Human DNA sequence from clone RP11-51K14 on chromosome 10, complete
             sequence
          Length = 108373

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 252   tgcttcgcagctgcttccca 271
             ||||||||||||||||||||
Sbjct: 22518 tgcttcgcagctgcttccca 22537
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>emb|BX537121.4| Zebrafish DNA sequence from clone CH211-196P24 in linkage group 3,
              complete sequence
          Length = 184845

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 121    cagtttaatgattttgtttcatcatttc 148
              ||||||| |||||||| |||||||||||
Sbjct: 168995 cagtttagtgattttgcttcatcatttc 168968
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>emb|AL928727.8| Zebrafish DNA sequence from clone CH211-130P8 in linkage group 5,
              complete sequence
          Length = 172861

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 144    atttccataactcctccatcggaa 167
              ||||||||| ||||||||||||||
Sbjct: 129015 atttccatatctcctccatcggaa 129038
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>gb|AC140192.3| Mus musculus BAC clone RP24-377O11 from 6, complete sequence
          Length = 160574

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 129   tgattttgtttcatcatttccata 152
             |||||||||||||| |||||||||
Sbjct: 67725 tgattttgtttcataatttccata 67702
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>gb|AC140466.3| Mus musculus BAC clone RP24-392F9 from 6, complete sequence
          Length = 148392

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 129    tgattttgtttcatcatttccata 152
              |||||||||||||| |||||||||
Sbjct: 143508 tgattttgtttcataatttccata 143485
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>emb|AL844193.6| Zebrafish DNA sequence from clone DKEY-28J3, complete sequence
          Length = 210900

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 127   aatgattttgtttcatcatt 146
             ||||||||||||||||||||
Sbjct: 54435 aatgattttgtttcatcatt 54454


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,682,730
Number of Sequences: 3902068
Number of extensions: 2682730
Number of successful extensions: 50010
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49940
Number of HSP's gapped (non-prelim): 68
length of query: 289
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 267
effective length of database: 17,147,199,772
effective search space: 4578302339124
effective search space used: 4578302339124
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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