ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet124e03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PER2_HORVU (Q01548) Peroxidase 2 (EC 1.11.1.7) (Fragment) 37 0.001
2VID21_GIBZE (Q4IB96) Chromatin modification-related protein VID21 32 0.46
3TARA_HUMAN (Q9H2D6) TRIO and F-actin-binding protein (Protein Ta... 30 1.8
4CYP4_CAEEL (P52012) Peptidyl-prolyl cis-trans isomerase 4 (EC 5.... 29 3.9
5ATG15_ASHGO (Q75EN3) Putative lipase ATG15 (EC 3.1.1.3) (Autopha... 29 3.9
6CRX_BOVIN (Q9XSK0) Cone-rod homeobox protein 29 3.9
7MCR_SAISC (Q9N0W8) Mineralocorticoid receptor (MR) 28 6.7
8MCR_AOTNA (Q3YC04) Mineralocorticoid receptor (MR) 28 6.7
9PER3_ARMRU (P17180) Peroxidase C3 precursor (EC 1.11.1.7) 28 6.7
10CRX_HUMAN (O43186) Cone-rod homeobox protein 28 6.7
11NFRKB_XENTR (Q6P4L9) Nuclear factor related to kappa-B-binding p... 28 8.8
12MCR_TUPGB (Q29131) Mineralocorticoid receptor (MR) 28 8.8
13HIS52_SYNPX (Q7U899) Imidazole glycerol phosphate synthase subun... 28 8.8
14PTH_SILPO (Q5LV91) Peptidyl-tRNA hydrolase (EC 3.1.1.29) (PTH) 28 8.8
15PER23_ARATH (O80912) Peroxidase 23 precursor (EC 1.11.1.7) (Atpe... 28 8.8
16PER22_ARATH (P24102) Peroxidase 22 precursor (EC 1.11.1.7) (Atpe... 28 8.8
17MGA_HUMAN (O43451) Maltase-glucoamylase, intestinal [Includes: M... 28 8.8
18COAA1_BOVIN (P23206) Collagen alpha-1(X) chain precursor 28 8.8

>PER2_HORVU (Q01548) Peroxidase 2 (EC 1.11.1.7) (Fragment)|
          Length = 170

 Score = 36.6 bits (83), Expect(2) = 0.001
 Identities = 15/17 (88%), Positives = 17/17 (100%)
 Frame = -3

Query: 180 SKGEIRNNCAVPNRRVQ 130
           +KGEIRNNCAVPNRRV+
Sbjct: 141 TKGEIRNNCAVPNRRVR 157



 Score = 23.1 bits (48), Expect(2) = 0.001
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = -1

Query: 131 RTSRPPSPA 105
           RTSRPPSPA
Sbjct: 157 RTSRPPSPA 165



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>VID21_GIBZE (Q4IB96) Chromatin modification-related protein VID21|
          Length = 1629

 Score = 32.0 bits (71), Expect = 0.46
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 173 ARSGTTAPSPTGVSRTSRPPSPATRGSPLTCERYIT 66
           A +G ++P+P  ++  + PP P  + SP   ER +T
Sbjct: 573 ADTGPSSPTPAHIAEVATPPEPVRQNSPPKAERAVT 608



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>TARA_HUMAN (Q9H2D6) TRIO and F-actin-binding protein (Protein Tara)|
            (Trio-associated repeat on actin)
          Length = 2365

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = -1

Query: 176  RARSGTTAPSPTGVSRTSRPPSPATRGSPLTCERYITNRCNVVV 45
            RA S +  P     SRTS P  PA  G+PLT        C V +
Sbjct: 975  RATSSSHNPGHQSTSRTSSPVYPAAYGAPLTSPEPSQPPCAVCI 1018



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>CYP4_CAEEL (P52012) Peptidyl-prolyl cis-trans isomerase 4 (EC 5.2.1.8)|
           (PPIase) (Rotamase) (Cyclophilin-4) (Cyclophilin mog-6)
           (Masculinisation of germline protein 6)
          Length = 523

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +1

Query: 40  HSTTTLHRLVIYLSHVSGDPLVAGDGGLDVLDTPVGD 150
           ++ T  HRL+       GDP   G GG  + D P  D
Sbjct: 316 YNNTKFHRLIKNFMLQGGDPTGTGHGGESIWDKPFSD 352



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>ATG15_ASHGO (Q75EN3) Putative lipase ATG15 (EC 3.1.1.3) (Autophagy-related|
           protein 15)
          Length = 544

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 17/35 (48%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
 Frame = -1

Query: 176 RARSGTTAPSPTGVSRTSRP-PSPATRGSP-LTCE 78
           R R GTT+P P+ V+  S+P P+P + GSP  TC+
Sbjct: 500 RWRDGTTSPMPSSVA--SKPTPTPTSPGSPSSTCK 532



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>CRX_BOVIN (Q9XSK0) Cone-rod homeobox protein|
          Length = 299

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 182 APRARSGTTAPSPTGVSRTSRPPSPATRGSPLT 84
           +PR+ S    P P G+S +  PP P   GSP T
Sbjct: 124 SPRS-STDVCPDPLGISDSYSPPLPGPSGSPTT 155



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>MCR_SAISC (Q9N0W8) Mineralocorticoid receptor (MR)|
          Length = 982

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 167 SGTTAPSPTGVSRTSRPP-SPATRGSPLTCERYITNR 60
           +G  + S T  S  S P  SP T+G+PLTC   + NR
Sbjct: 207 AGINSVSSTTASFGSFPVHSPITQGTPLTCSPNVENR 243



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>MCR_AOTNA (Q3YC04) Mineralocorticoid receptor (MR)|
          Length = 984

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 167 SGTTAPSPTGVSRTSRPP-SPATRGSPLTCERYITNR 60
           +G  + S T  S  S P  SP T+G+PLTC   + NR
Sbjct: 208 AGINSVSSTTASFGSFPVHSPITQGTPLTCSPNVENR 244



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>PER3_ARMRU (P17180) Peroxidase C3 precursor (EC 1.11.1.7)|
          Length = 349

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -3

Query: 180 SKGEIRNNCAVPNRRVQDIETAVAGDEGIAADM 82
           ++GEIR NC V N R++ +E     D+G+ + +
Sbjct: 321 TQGEIRQNCRVVNSRIRGME----NDDGVVSSI 349



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>CRX_HUMAN (O43186) Cone-rod homeobox protein|
          Length = 299

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -1

Query: 167 SGTTAPSPTGVSRTSRPPSPATRGSPLT 84
           S    P P G+S +  PP P   GSP T
Sbjct: 128 STDVCPDPLGISDSYSPPLPGPSGSPTT 155



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>NFRKB_XENTR (Q6P4L9) Nuclear factor related to kappa-B-binding protein|
           (DNA-binding protein R kappa-B)
          Length = 1265

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 164 GTTAPSPTGVSRTSRPPSPATRGSP 90
           GT  P+   ++ +S PP+P T G+P
Sbjct: 699 GTPEPAQLSLTESSMPPTPGTPGTP 723



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>MCR_TUPGB (Q29131) Mineralocorticoid receptor (MR)|
          Length = 977

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 167 SGTTAPSPTGVSRTSRPP-SPATRGSPLTCERYITNR 60
           +G  + S T V   S P  SP T+G+PLTC   + NR
Sbjct: 208 AGINSVSSTTVRFGSFPVHSPITQGTPLTCSPTVDNR 244



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>HIS52_SYNPX (Q7U899) Imidazole glycerol phosphate synthase subunit hisH2 (EC|
           2.4.2.-) (IGP synthase glutamine amidotransferase
           subunit) (IGP synthase subunit hisH2) (ImGP synthase
           subunit hisH2) (IGPS subunit hisH2)
          Length = 212

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 11/42 (26%)
 Frame = +2

Query: 65  WLYISHMSAAIPSSPAT-----------AVSMSWTRLLGTAQ 157
           W+Y  H  AA+P  P T             +M W R LG  Q
Sbjct: 143 WVYFVHSYAAVPERPETLAAAASFGSSSVTAMVWQRRLGACQ 184



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>PTH_SILPO (Q5LV91) Peptidyl-tRNA hydrolase (EC 3.1.1.29) (PTH)|
          Length = 239

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 179 PRARSGTTAPSPTGVSRTSRPPSPATRGSPLT 84
           PR  +GT  P     +R   PP+PA   +P T
Sbjct: 190 PRPSTGTGRPPAKTPARAEEPPAPAASPAPAT 221



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>PER23_ARATH (O80912) Peroxidase 23 precursor (EC 1.11.1.7) (Atperox P23)|
           (ATP34)
          Length = 349

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -3

Query: 180 SKGEIRNNCAVPNRRVQDIETAVAGDEGIAADM 82
           ++GEIR NC V N R++ +E     D+G+ + +
Sbjct: 321 TQGEIRQNCRVVNPRIRVVE----NDDGVVSSI 349



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>PER22_ARATH (P24102) Peroxidase 22 precursor (EC 1.11.1.7) (Atperox P22)|
           (ATPEa) (Basic peroxidase E)
          Length = 349

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -3

Query: 180 SKGEIRNNCAVPNRRVQDIETAVAGDEGIAADM 82
           ++GEIR NC V N R++ +E     D+G+ + +
Sbjct: 321 TQGEIRQNCRVVNPRIRVVE----NDDGVVSSI 349



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>MGA_HUMAN (O43451) Maltase-glucoamylase, intestinal [Includes: Maltase (EC|
           3.2.1.20) (Alpha-glucosidase); Glucoamylase (EC 3.2.1.3)
           (Glucan 1,4-alpha-glucosidase)]
          Length = 1856

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = -1

Query: 167 SGTTAPSPTGVS--RTSRPPSPATRG-SPLTCERYITN 63
           +GT  P  TG +  RT+ PP P T G +P++ E  + N
Sbjct: 56  TGTPDPGTTGTTHARTTGPPDPGTTGTTPVSAECPVVN 93



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>COAA1_BOVIN (P23206) Collagen alpha-1(X) chain precursor|
          Length = 674

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -1

Query: 179 PRARSGTTAPSPTGVSRTSRPPSPATRGSP 90
           P  + GT +P P G      PP P+  G P
Sbjct: 79  PPGKPGTGSPGPQGQPGLPGPPGPSATGKP 108


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,381,972
Number of Sequences: 219361
Number of extensions: 464842
Number of successful extensions: 2619
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2614
length of database: 80,573,946
effective HSP length: 36
effective length of database: 72,676,950
effective search space used: 1744246800
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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