ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet124d07 |
|---|---|
| Clone Library Name | barley_pub |
>TAR1_KLULA (Q6CQE5) Protein TAR1| Length = 109 Score = 64.7 bits (156), Expect = 6e-11 Identities = 31/54 (57%), Positives = 35/54 (64%) Frame = +2 Query: 158 TCSLSVSRLYLALDGVYRPIWAAFPNNPTR*RRLVGRQGPGRTGLSPSQAPLSR 319 TCSLSVSR YLALDG+Y P+ AAFPNN TR + P TG SPS S+ Sbjct: 30 TCSLSVSRQYLALDGIYHPLRAAFPNNSTRRKHFTNNWDPRHTGFSPSMTSCSK 83
>TAR1_YEAST (Q8TGM6) Protein TAR1 (Transcript antisense to ribosomal RNA| protein 1) Length = 124 Score = 63.2 bits (152), Expect = 2e-10 Identities = 31/54 (57%), Positives = 35/54 (64%) Frame = +2 Query: 158 TCSLSVSRLYLALDGVYRPIWAAFPNNPTR*RRLVGRQGPGRTGLSPSQAPLSR 319 TCSLSVSR YLALDG+Y P+ AAFPNN T R + P TG SPS S+ Sbjct: 45 TCSLSVSRQYLALDGIYHPLRAAFPNNSTLRRHFTKNRTPRHTGFSPSMTSCSK 98
>CDSN_MOUSE (Q7TPC1) Corneodesmosin precursor| Length = 561 Score = 32.3 bits (72), Expect = 0.30 Identities = 32/114 (28%), Positives = 47/114 (41%), Gaps = 14/114 (12%) Frame = -2 Query: 320 PWKGAPGRVRAPSGP----------DPVAP-RGAVNESGC---LGMQPKSGGKLRPRLNT 183 P +G+PG +GP +P+ P RG+ + SG + QP G ++P T Sbjct: 356 PIRGSPGAPSFAAGPPVSEGKYFSSNPIIPSRGSSSSSGYPVGVVFQPVGSGGVQP-CGT 414 Query: 182 GERPIANKYREGKMKRTLKRESKSA*NCREGSGWGPAMRPGRMRNGFGWSALTS 21 G +++ T S S C GS GP PG G S+L+S Sbjct: 415 GSVSSKGPCSGTRIQITSSSSSTSYHPCSGGSSQGPCSSPGTGSISGGSSSLSS 468
>ARX_MOUSE (O35085) Homeobox protein ARX (Aristaless-related homeobox)| Length = 564 Score = 32.3 bits (72), Expect = 0.30 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = +3 Query: 255 ASWGDRVRAGRGSHPPRRPFPGDL 326 A W R +AG +HPP PFPG L Sbjct: 383 AKWRKREKAGAQTHPPGLPFPGPL 406
>IER5_MOUSE (O89113) Immediate early response gene 5 protein| Length = 308 Score = 32.3 bits (72), Expect = 0.30 Identities = 21/67 (31%), Positives = 28/67 (41%) Frame = -1 Query: 327 PSPLERGAWEGESPVRPGPCRPTRRRQRVGLFGNAAQIGR*TPSKAKYRRETDSEQVPRG 148 P +E + E SP P PC R+R G+ G A + K R EQ G Sbjct: 177 PPAVEERSSEDGSPAPPAPC--PRKRGAAGVGGGRASCSAPGSTPLKKPRRNSEEQPVTG 234 Query: 147 KDEKDFE 127 +D+ D E Sbjct: 235 EDDTDEE 241
>ARX_HUMAN (Q96QS3) Homeobox protein ARX (Aristaless-related homeobox)| Length = 562 Score = 32.3 bits (72), Expect = 0.30 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = +3 Query: 255 ASWGDRVRAGRGSHPPRRPFPGDL 326 A W R +AG +HPP PFPG L Sbjct: 381 AKWRKREKAGAQTHPPGLPFPGPL 404
>COLQ_TORMA (Q03637) Acetylcholinesterase collagenic tail peptide precursor| (AChE Q subunit) Length = 471 Score = 32.0 bits (71), Expect = 0.40 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 7/54 (12%) Frame = -2 Query: 314 KGAPGRVRAPSG-------PDPVAPRGAVNESGCLGMQPKSGGKLRPRLNTGER 174 KG PG VR P G P P+ PRG + G G+ P + G + P+ TG++ Sbjct: 150 KGRPG-VRGPRGMPGSPCSPGPIGPRGEKGDIGLTGL-PGARGPMGPKGLTGQK 201
>CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor| Length = 1463 Score = 32.0 bits (71), Expect = 0.40 Identities = 21/51 (41%), Positives = 21/51 (41%), Gaps = 5/51 (9%) Frame = -2 Query: 311 GAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSG-----GKLRPRLNTGER 174 GA G A P P PRG V G G SG G PR N GER Sbjct: 1121 GAAGHQGAVGSPGPAGPRGPVGPHGPPGKDGSSGHPGPIGPPGPRGNRGER 1171 Score = 29.3 bits (64), Expect = 2.6 Identities = 18/46 (39%), Positives = 21/46 (45%) Frame = -2 Query: 311 GAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGKLRPRLNTGER 174 GAPG + A P P GA + G G K+G K P GER Sbjct: 404 GAPGLLGARGPPGPAGANGAPGQRGPSGEPGKNGAKGEPGAR-GER 448 Score = 27.3 bits (59), Expect = 9.8 Identities = 17/48 (35%), Positives = 21/48 (43%) Frame = -2 Query: 317 WKGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGKLRPRLNTGER 174 ++G PG P P GA+ SG G +SG RP GER Sbjct: 198 YQGPPGEPGQAGPAGPPGPPGAIGPSGPAGKDGESGRPGRP----GER 241
>COL34_CAEEL (P34687) Cuticle collagen 34 (Abnormal ray morphology protein 4)| Length = 299 Score = 31.6 bits (70), Expect = 0.52 Identities = 19/52 (36%), Positives = 23/52 (44%) Frame = -2 Query: 311 GAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGKLRPRLNTGERPIANKY 156 G PG +P P P P G + G G P + G P + GER I KY Sbjct: 234 GQPGADGSPGQPGPKGPNGPDGQPGADG-NPGAPGPAGPPGSPGERGICPKY 284
>RL15_STAEQ (Q5HM18) 50S ribosomal protein L15| Length = 146 Score = 31.2 bits (69), Expect = 0.68 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 2/51 (3%) Frame = -2 Query: 314 KGAPG--RVRAPSGPDPVAPRGAVNESGCLGMQPKSGGKLRPRLNTGERPI 168 K A G RVR G G + G G + +SGGKLRP G+ P+ Sbjct: 7 KAAEGSRRVRNRVGRGAATGNGKTSGRGQKGQKARSGGKLRPGFEGGQLPL 57
>CYLC2_HUMAN (Q14093) Cylicin-2 (Cylicin II) (Multiple-band polypeptide II)| Length = 348 Score = 31.2 bits (69), Expect = 0.68 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 5/79 (6%) Frame = -1 Query: 282 RPGPCRPTRRRQRVGLFGNAAQIGR*TPSKAKYRRETDSE-QVPRGKDE----KDFEKRV 118 R P +PTR V + AA+IG+ K + TDSE ++ +GK + KD EK Sbjct: 95 RRQPLKPTRT---VEVDSKAAEIGKKGEDKTTQKDTTDSESELKQGKKDSKKGKDIEKGK 151 Query: 117 KECLKLPGGKRMGAGDAPR 61 +E L + G DA + Sbjct: 152 EEKLDAKKDSKKGKKDAEK 170
>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor| Length = 1464 Score = 31.2 bits (69), Expect = 0.68 Identities = 21/51 (41%), Positives = 21/51 (41%), Gaps = 5/51 (9%) Frame = -2 Query: 311 GAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSG-----GKLRPRLNTGER 174 GA G A P P PRG V G G SG G PR N GER Sbjct: 1121 GAAGHQGAIGSPGPAGPRGPVGPHGPPGKDGTSGHPGPIGPPGPRGNRGER 1171 Score = 27.3 bits (59), Expect = 9.8 Identities = 14/34 (41%), Positives = 15/34 (44%) Frame = -2 Query: 311 GAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSG 210 GAPG P P PV P G + G G SG Sbjct: 1040 GAPGAPGHPGPPGPVGPSGKSGDRGETGPAGPSG 1073
>ELN_BOVIN (P04985) Elastin precursor (Tropoelastin)| Length = 747 Score = 30.8 bits (68), Expect = 0.88 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 2/58 (3%) Frame = +1 Query: 145 FPSRYLFAIGLSPVFSLGRSLPPDLGCIPKQPDSLTAPRGATGSGPDGAL--TLPGAP 312 F +R IG P F LG P +G P + A G+G GAL +PGAP Sbjct: 408 FGARGAVGIGGIPTFGLGPGGFPGIGDAAAAPAAAAAKAAKIGAGGVGALGGVVPGAP 465
>CO4A4_RABIT (P55787) Collagen alpha-4(IV) chain (Fragment)| Length = 623 Score = 30.8 bits (68), Expect = 0.88 Identities = 19/47 (40%), Positives = 23/47 (48%) Frame = +1 Query: 172 GLSPVFSLGRSLPPDLGCIPKQPDSLTAPRGATGSGPDGALTLPGAP 312 G+SP G PP L P +P + P GATG P G + PG P Sbjct: 151 GISPPGLFGERGPPGL---PGRPGPV-GPMGATGRAPKGDIPDPGPP 193
>CO2A1_RAT (P05539) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1419 Score = 30.4 bits (67), Expect = 1.2 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%) Frame = +1 Query: 229 PKQPDSLTAPRGATGS-GPDGALTLPGA 309 P+ P +T P+GA G+ GP GA PGA Sbjct: 806 PQGPTGVTGPKGARGAQGPPGATGFPGA 833 Score = 30.4 bits (67), Expect = 1.2 Identities = 28/92 (30%), Positives = 37/92 (40%), Gaps = 8/92 (8%) Frame = -2 Query: 311 GAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSG--------GKLRPRLNTGERPIANKY 156 GAPG AP P P P G +G LG + ++G G+ P+ TG P + Sbjct: 355 GAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGETG--PAGPQG 412 Query: 155 REGKMKRTLKRESKSA*NCREGSGWGPAMRPG 60 G KR ++ E G GP PG Sbjct: 413 APGPAGEEGKRGARG-----EPGGAGPIGPPG 439 Score = 29.3 bits (64), Expect = 2.6 Identities = 18/49 (36%), Positives = 20/49 (40%) Frame = -2 Query: 311 GAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGKLRPRLNTGERPIA 165 GAPG P P P P G + G G Q G + P G R IA Sbjct: 997 GAPGAPGPPGSPGPAGPTGKQGDRGEAGAQ----GPMGPSGPAGARGIA 1041
>CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1418 Score = 30.4 bits (67), Expect = 1.2 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%) Frame = +1 Query: 229 PKQPDSLTAPRGATGS-GPDGALTLPGA 309 P+ P +T P+GA G+ GP GA PGA Sbjct: 805 PQGPTGVTGPKGARGAQGPPGATGFPGA 832 Score = 27.7 bits (60), Expect = 7.5 Identities = 13/34 (38%), Positives = 14/34 (41%) Frame = -2 Query: 311 GAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSG 210 GAPG P P P P G + G G Q G Sbjct: 996 GAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMG 1029
>CO2A1_MOUSE (P28481) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1459 Score = 30.4 bits (67), Expect = 1.2 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%) Frame = +1 Query: 229 PKQPDSLTAPRGATGS-GPDGALTLPGA 309 P+ P +T P+GA G+ GP GA PGA Sbjct: 846 PQGPTGVTGPKGARGAQGPPGATGFPGA 873 Score = 29.6 bits (65), Expect = 2.0 Identities = 28/92 (30%), Positives = 36/92 (39%), Gaps = 8/92 (8%) Frame = -2 Query: 311 GAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSG--------GKLRPRLNTGERPIANKY 156 GAPG AP P P P G +G LG + ++G G P+ TG P + Sbjct: 395 GAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQAGEPGIAGFKGDQGPKGETG--PAGPQG 452 Query: 155 REGKMKRTLKRESKSA*NCREGSGWGPAMRPG 60 G KR ++ E G GP PG Sbjct: 453 APGPAGEEGKRGARG-----EPGGAGPIGPPG 479 Score = 29.3 bits (64), Expect = 2.6 Identities = 18/49 (36%), Positives = 20/49 (40%) Frame = -2 Query: 311 GAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGKLRPRLNTGERPIA 165 GAPG P P P P G + G G Q G + P G R IA Sbjct: 1037 GAPGAPGPPGSPGPAGPTGKQGDRGEAGAQ----GPMGPSGPAGARGIA 1081
>DPY13_CAEEL (P17657) Cuticle collagen dpy-13 (Protein dumpy-13)| Length = 302 Score = 30.4 bits (67), Expect = 1.2 Identities = 19/52 (36%), Positives = 21/52 (40%) Frame = -2 Query: 311 GAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGKLRPRLNTGERPIANKY 156 G PG P P P P G + G G P G + P GER I KY Sbjct: 237 GQPGNDGTPGQPGPKGPPGPDGKPGADG-NPGQPGPVGPPGTPGERGICPKY 287 Score = 27.3 bits (59), Expect = 9.8 Identities = 14/28 (50%), Positives = 15/28 (53%) Frame = +1 Query: 229 PKQPDSLTAPRGATGSGPDGALTLPGAP 312 P QP S AP GP+GA PGAP Sbjct: 174 PGQPGSDAAPGEQGPKGPNGAPGKPGAP 201
>CO1A2_CHICK (P02467) Collagen alpha-2(I) chain precursor (Fragments)| Length = 1362 Score = 30.4 bits (67), Expect = 1.2 Identities = 16/42 (38%), Positives = 17/42 (40%) Frame = -2 Query: 314 KGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGKLRPRL 189 KG PG V P P P G E G G+ G K P L Sbjct: 619 KGEPGNVGPAGAPGPAGPGGIPGERGVAGVPGGKGEKGAPGL 660 Score = 28.1 bits (61), Expect = 5.7 Identities = 17/44 (38%), Positives = 17/44 (38%) Frame = -2 Query: 326 QVPWKGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGKLRP 195 QV G PG P PV P GA G G Q G K P Sbjct: 966 QVGPSGKPGNRGDPGPVGPVGPAGAFGPRGLAGPQGPRGEKGEP 1009
>RL15_STAES (Q8CRH9) 50S ribosomal protein L15| Length = 146 Score = 30.0 bits (66), Expect = 1.5 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%) Frame = -2 Query: 314 KGAPG--RVRAPSGPDPVAPRGAVNESGCLGMQPKSGGKLRPRLNTGERPI 168 K A G RVR G G + G G + +SGGK+RP G+ P+ Sbjct: 7 KAAEGSRRVRNRVGRGAATGNGKTSGRGQKGQKARSGGKVRPGFEGGQLPL 57
>B3A2_RABIT (P48746) Anion exchange protein 2 (Non-erythroid band 3-like| protein) (AE2 anion exchanger) (Solute carrier family 4 member 2) (B3RP) Length = 1237 Score = 30.0 bits (66), Expect = 1.5 Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 2/44 (4%) Frame = +1 Query: 196 GRSLPPDLGCIPK--QPDSLTAPRGATGSGPDGALTLPGAPFQG 321 GR LPP LG PK Q +L A G+ D L G PF G Sbjct: 637 GRLLPPGLGLEPKSAQDKALLQMVEAAGAAEDDPLRRTGRPFGG 680
>CO8A2_MOUSE (P25318) Collagen alpha-2(VIII) chain precursor (Endothelial| collagen) Length = 699 Score = 30.0 bits (66), Expect = 1.5 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Frame = -2 Query: 311 GAPGRVRAPSGPDPVAPRGA---VNESGCLGMQPKSGGKLRPRLNTGERP 171 G+PG P P P P GA ++E+G G+ +GG L G +P Sbjct: 509 GSPGLTGPPGPPGPPGPPGAPGALDETGIAGLHLPNGGVEGAVLGKGGKP 558
>COL2_CAEEL (P17656) Cuticle collagen 2 precursor| Length = 301 Score = 30.0 bits (66), Expect = 1.5 Identities = 15/39 (38%), Positives = 16/39 (41%) Frame = -2 Query: 311 GAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGKLRP 195 G PG PSGP P P G +G G GG P Sbjct: 171 GNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEP 209
>CUC2C_HAECO (P16252) Cuticle collagen 2C (Fragment)| Length = 210 Score = 29.6 bits (65), Expect = 2.0 Identities = 19/52 (36%), Positives = 21/52 (40%) Frame = -2 Query: 311 GAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGKLRPRLNTGERPIANKY 156 GAPG AP P PRG G G G +P GER + KY Sbjct: 145 GAPGHPGAPGAPGEKGPRGQDGHPGAPGNAGHPGQPGQPG-PPGERGVCPKY 195
>CO3A1_BOVIN (P04258) Collagen alpha-1(III) chain| Length = 1049 Score = 29.6 bits (65), Expect = 2.0 Identities = 23/64 (35%), Positives = 24/64 (37%), Gaps = 17/64 (26%) Frame = -2 Query: 314 KGAPGRVRAP------------SGPDPVAPRGAVNESGCLGMQPKSG-----GKLRPRLN 186 +G PG AP P P PRG V SG G SG G PR N Sbjct: 953 RGFPGNPGAPGSPGPAGHQGAVGSPGPAGPRGPVGPSGPPGKDGASGHPGPIGPPGPRGN 1012 Query: 185 TGER 174 GER Sbjct: 1013 RGER 1016 Score = 28.5 bits (62), Expect = 4.4 Identities = 17/45 (37%), Positives = 19/45 (42%) Frame = -2 Query: 314 KGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGKLRPRLNTG 180 +G PG P GP P +G SG G K G PR TG Sbjct: 569 QGMPGERGGPGGPGPKGDKGEPGSSGVDGAPGKDG----PRGPTG 609 Score = 28.1 bits (61), Expect = 5.7 Identities = 14/39 (35%), Positives = 17/39 (43%) Frame = -2 Query: 311 GAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGKLRP 195 GAPG + A P P G + G G K+G K P Sbjct: 249 GAPGLIGARGPPGPPGTNGVPGQRGAAGEPGKNGAKGDP 287 Score = 27.7 bits (60), Expect = 7.5 Identities = 14/39 (35%), Positives = 15/39 (38%) Frame = -2 Query: 311 GAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGKLRP 195 GAPG P P P G G +G K G RP Sbjct: 42 GAPGYQGPPGEPGQAGPAGPPGPPGAIGPSGKDGESGRP 80 Score = 27.3 bits (59), Expect = 9.8 Identities = 14/34 (41%), Positives = 15/34 (44%) Frame = -2 Query: 311 GAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSG 210 GAPG P P PV P G + G G SG Sbjct: 885 GAPGAPGHPGPPGPVGPAGKSGDRGETGPAGPSG 918
>CO2A1_BOVIN (P02459) Collagen alpha-1(II) chain precursor (Fragments)| Length = 747 Score = 29.6 bits (65), Expect = 2.0 Identities = 28/92 (30%), Positives = 37/92 (40%), Gaps = 8/92 (8%) Frame = -2 Query: 311 GAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSG--------GKLRPRLNTGERPIANKY 156 GAPG AP P P P G +G LG + ++G G+ P+ G P + Sbjct: 238 GAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPG--PAGVQG 295 Query: 155 REGKMKRTLKRESKSA*NCREGSGWGPAMRPG 60 G KR ++ E G GPA PG Sbjct: 296 APGPAGEEGKRGARG-----EPGGAGPAGPPG 322
>CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor| Length = 1466 Score = 29.6 bits (65), Expect = 2.0 Identities = 23/64 (35%), Positives = 24/64 (37%), Gaps = 17/64 (26%) Frame = -2 Query: 314 KGAPGRVRAP------------SGPDPVAPRGAVNESGCLGMQPKSG-----GKLRPRLN 186 +G PG AP P P PRG V SG G SG G PR N Sbjct: 1109 RGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGN 1168 Query: 185 TGER 174 GER Sbjct: 1169 RGER 1172 Score = 27.7 bits (60), Expect = 7.5 Identities = 20/46 (43%), Positives = 23/46 (50%) Frame = -2 Query: 311 GAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGKLRPRLNTGER 174 G PG+ PSGP P GA+ SG G +SG RP GER Sbjct: 204 GEPGQA-GPSGPP--GPPGAIGPSGPAGKDGESGRPGRP----GER 242 Score = 27.3 bits (59), Expect = 9.8 Identities = 15/39 (38%), Positives = 17/39 (43%) Frame = -2 Query: 311 GAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGKLRP 195 GAPG + A P P GA G G K+G K P Sbjct: 405 GAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEP 443
>COFA1_MOUSE (O35206) Collagen alpha-1(XV) chain precursor [Contains: Endostatin| (Endostatin-XV)] Length = 1367 Score = 29.6 bits (65), Expect = 2.0 Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%) Frame = -2 Query: 311 GAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSG--GKLRPRLNTGER 174 G+PG AP P P P G G G Q G G P + GE+ Sbjct: 632 GSPGEDGAPGEPGPQGPEGQPGLDGASGQQGMKGEKGARGPNGSAGEK 679
>CXA1_HUMAN (P17302) Gap junction alpha-1 protein (Connexin-43) (Cx43) (Gap| junction 43 kDa heart protein) Length = 381 Score = 29.3 bits (64), Expect = 2.6 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Frame = +1 Query: 112 LFDSLFKVLFIFPSRYLFAIGLSPVFSLGRS-LPPDLGCIPKQPDSLT 252 LF S+F+V F+ Y++ LS V++ R P + C +P T Sbjct: 159 LFKSIFEVAFLLIQWYIYGFSLSAVYTCKRDPCPHQVDCFLSRPTEKT 206
>VNUA_PRVKA (P33485) Probable nuclear antigen| Length = 1733 Score = 29.3 bits (64), Expect = 2.6 Identities = 14/37 (37%), Positives = 16/37 (43%) Frame = -2 Query: 317 WKGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGG 207 W+ P R P D V PRG + GC G GG Sbjct: 1624 WRRGPRPRRRPGLTDRVPPRGGPSPRGCRGAGRAGGG 1660
>CO1A2_RAT (P02466) Collagen alpha-2(I) chain precursor| Length = 1372 Score = 29.3 bits (64), Expect = 2.6 Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 6/62 (9%) Frame = -2 Query: 311 GAPGRVRAPSGPDPVA------PRGAVNESGCLGMQPKSGGKLRPRLNTGERPIANKYRE 150 GAPG P PV PRG V E G G + ++G K P + P E Sbjct: 325 GAPGLPGPRGIPGPVGAAGATGPRGLVGEPGPAGSKGETGNKGEPGSAGAQGPPGPSGEE 384 Query: 149 GK 144 GK Sbjct: 385 GK 386
>CO1A2_HUMAN (P08123) Collagen alpha-2(I) chain precursor| Length = 1366 Score = 29.3 bits (64), Expect = 2.6 Identities = 22/56 (39%), Positives = 24/56 (42%) Frame = -2 Query: 314 KGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGKLRPRLNTGERPIANKYREG 147 KG PG V A P P G E G G+ G K P L GE I N R+G Sbjct: 621 KGEPGVVGAVGTAGPSGPSGLPGERGAAGIPGGKGEKGEPGLR-GE--IGNPGRDG 673
>PHLPP_HUMAN (O60346) PH domain leucine-rich repeat-containing protein| phosphatase (EC 3.1.3.16) (PH domain leucine-rich repeat protein phosphatase) (Pleckstrin homology domain-containing family E protein 1) (Suprachiasmatic nucleus circadian oscillatory Length = 1717 Score = 29.3 bits (64), Expect = 2.6 Identities = 29/99 (29%), Positives = 38/99 (38%) Frame = -2 Query: 308 APGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGKLRPRLNTGERPIANKYREGKMKRTL 129 APG AP GP P GA QP +GG P G + R G++KR L Sbjct: 74 APGE--APPGPLPGRAGGAGRRRRRGAPQPIAGGAA-PVPGAGGGANSLLLRRGRLKRNL 130 Query: 128 KRESKSA*NCREGSGWGPAMRPGRMRNGFGWSALTSYCS 12 + +A + S + PG SA S C+ Sbjct: 131 SAAAAAASSSSSSSAAAASHSPGAAGLPASCSASASLCT 169
>CO8A2_HUMAN (P25067) Collagen alpha-2(VIII) chain precursor (Endothelial| collagen) Length = 703 Score = 28.9 bits (63), Expect = 3.4 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%) Frame = -2 Query: 311 GAPGRVRAPSGPDPVAPRGA---VNESGCLGMQPKSGGKLRPRLNTGERP 171 G+PG P P P P GA +E+G G+ +GG L G +P Sbjct: 513 GSPGITGPPGPPGPPGPPGAPGAFDETGIAGLHLPNGGVEGAVLGKGGKP 562 Score = 27.3 bits (59), Expect = 9.8 Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 1/32 (3%) Frame = +1 Query: 229 PKQPDSLTAPRGATGSGPDGALTLPGAP-FQG 321 P P L P G T G GA +PG P FQG Sbjct: 157 PPGPPGLPGPSGITIPGKPGAQGVPGPPGFQG 188
>CAS4_EPHMU (P18503) Short-chain collagen C4 (Fragment)| Length = 366 Score = 28.9 bits (63), Expect = 3.4 Identities = 14/40 (35%), Positives = 18/40 (45%) Frame = -2 Query: 314 KGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGKLRP 195 +GAPG AP P P P+G + G G + G P Sbjct: 48 QGAPGAPGAPGLPGPAGPQGPKGDKGLPGNDGQPGAPGAP 87
>CO1A2_BOVIN (P02465) Collagen alpha-2(I) chain precursor| Length = 1364 Score = 28.9 bits (63), Expect = 3.4 Identities = 15/37 (40%), Positives = 16/37 (43%) Frame = -2 Query: 314 KGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGK 204 KG PG V AP P P G E G G+ G K Sbjct: 619 KGEPGVVGAPGTAGPSGPSGLPGERGAAGIPGGKGEK 655
>CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 28.9 bits (63), Expect = 3.4 Identities = 14/39 (35%), Positives = 18/39 (46%) Frame = -2 Query: 311 GAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGKLRP 195 G PG + P P PRGA G G P + G++ P Sbjct: 837 GPPGPIGNVGAPGPKGPRGAAGPPGATGF-PGAAGRVGP 874 Score = 28.5 bits (62), Expect = 4.4 Identities = 17/48 (35%), Positives = 22/48 (45%) Frame = -2 Query: 317 WKGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGKLRPRLNTGER 174 ++G PG P G P+ PRG G G ++G RP GER Sbjct: 190 FQGPPGEPGEPGGSGPMGPRGPPGPPGKNGDDGEAGKPGRP----GER 233
>CNTP4_HUMAN (Q9C0A0) Contactin-associated protein-like 4 precursor (Cell| recognition molecule Caspr4) Length = 1308 Score = 28.9 bits (63), Expect = 3.4 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = -2 Query: 287 PSGPDPVAPRGAVNESGCLGMQPKSGGKLRPRLNT 183 PS PDPV G V ES C+ QP + R R ++ Sbjct: 1185 PSHPDPVTVTGHVTESSCMA-QPGTDATSRERTHS 1218
>MARCO_HUMAN (Q9UEW3) Macrophage receptor MARCO (Macrophage receptor with| collagenous structure) (Scavenger receptor class A member 2) Length = 520 Score = 28.9 bits (63), Expect = 3.4 Identities = 12/37 (32%), Positives = 21/37 (56%) Frame = -2 Query: 314 KGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGK 204 +GAPG+ A P P +G+ + G +G + ++G K Sbjct: 210 QGAPGKQGATGTPGPQGEKGSKGDGGLIGPKGETGTK 246
>COL1_CAEEL (P08124) Cuticle collagen 1 precursor (Protein squat-3) (Protein| dumpy-15) Length = 296 Score = 28.9 bits (63), Expect = 3.4 Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 5/57 (8%) Frame = -2 Query: 311 GAPGRVRAPSG---PDPVAPRGAVNESGCLGMQPKSG--GKLRPRLNTGERPIANKY 156 G PG AP P P P+GA G G +SG G P GE+ I KY Sbjct: 225 GPPGPPGAPGNDGPPGPPGPKGAPGPDGPPGADGQSGPPGPPGPAGTPGEKGICPKY 281 Score = 27.7 bits (60), Expect = 7.5 Identities = 13/34 (38%), Positives = 15/34 (44%) Frame = -2 Query: 311 GAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSG 210 G PG AP P P P G E+G G + G Sbjct: 169 GRPGTDAAPGSPGPRGPPGPAGEAGAPGPAGEPG 202
>US6NL_HUMAN (Q92738) USP6 N-terminal-like protein (Related to the N-terminus of| tre) (RN-tre) Length = 828 Score = 28.5 bits (62), Expect = 4.4 Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 1/92 (1%) Frame = -1 Query: 327 PSPLERGAWEGESPVRPGPCRPTRRRQRVGLFGNAAQIGR*TPSKAKY-RRETDSEQVPR 151 PSPL G E +P R P + R G TP +A+ RR++ E+ + Sbjct: 395 PSPLASGRRESGAPHRRHEHSP-HPQSRTG-----------TPERAQPPRRKSVEEESKK 442 Query: 150 GKDEKDFEKRVKECLKLPGGKRMGAGDAPRPY 55 KDE DF++ KLP G + D+ R Y Sbjct: 443 LKDEADFQR------KLPSGPQ----DSSRQY 464
>ARX_BRARE (O42115) Aristaless-related homeobox protein (ARX)| Length = 453 Score = 28.5 bits (62), Expect = 4.4 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = +3 Query: 255 ASWGDRVRAGRGSHPPRRPFPGDL 326 A W R +AG +HP PFPG L Sbjct: 268 AKWRKREKAGVQAHPTGLPFPGPL 291
>CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor| Length = 1763 Score = 28.5 bits (62), Expect = 4.4 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 5/51 (9%) Frame = -2 Query: 314 KGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSG-----GKLRPRLNTGE 177 KG G AP P PV P+G+ G G++ + G G+ PR GE Sbjct: 1186 KGEAGFPGAPGLPGPVGPKGSAGAPGFPGLKGEPGLPGLEGQPGPRGMKGE 1236 Score = 27.7 bits (60), Expect = 7.5 Identities = 15/34 (44%), Positives = 17/34 (50%) Frame = -2 Query: 311 GAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSG 210 G PG V AP P P P+G E G G+ K G Sbjct: 639 GKPGIVGAPGLPGPPGPKG---EPGLTGLPEKPG 669
>PKHA4_RAT (P60669) Pleckstrin homology domain-containing family A member 4| (Phosphoinositol 3-phosphate-binding protein 1) (PEPP-1) Length = 779 Score = 28.5 bits (62), Expect = 4.4 Identities = 14/23 (60%), Positives = 15/23 (65%) Frame = +2 Query: 260 VGRQGPGRTGLSPSQAPLSRGLG 328 V R+ GRT SP APLSRG G Sbjct: 183 VNRREEGRTSESPEVAPLSRGPG 205
>CO1A1_BOVIN (P02453) Collagen alpha-1(I) chain (Fragments)| Length = 779 Score = 28.5 bits (62), Expect = 4.4 Identities = 13/28 (46%), Positives = 14/28 (50%) Frame = -2 Query: 311 GAPGRVRAPSGPDPVAPRGAVNESGCLG 228 GAPG AP P PV P G + G G Sbjct: 605 GAPGPPGAPGAPGPVGPAGKSGDRGETG 632
>CO9A2_MOUSE (Q07643) Collagen alpha-2(IX) chain precursor| Length = 688 Score = 28.5 bits (62), Expect = 4.4 Identities = 13/37 (35%), Positives = 16/37 (43%) Frame = -2 Query: 311 GAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGKL 201 GAPG P P PV G + CLG + +L Sbjct: 643 GAPGEAGRPGRPGPVGLPGFCEPAACLGASAYTSARL 679
>RL15_VIBVY (Q7MPG9) 50S ribosomal protein L15| Length = 144 Score = 28.1 bits (61), Expect = 5.7 Identities = 23/69 (33%), Positives = 31/69 (44%) Frame = -2 Query: 314 KGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGKLRPRLNTGERPIANKYREGKMKR 135 K AP RV G + G G G + +SGGK+RP G+ P+ K R K Sbjct: 13 KHAPKRVGRGIG----SGLGKTGGRGHKGQKSRSGGKVRPGFEGGQMPL--KQRLPKFGF 66 Query: 134 TLKRESKSA 108 T ++ SA Sbjct: 67 TSRKSLVSA 75
>RL15_VIBVU (Q8DE59) 50S ribosomal protein L15| Length = 144 Score = 28.1 bits (61), Expect = 5.7 Identities = 23/69 (33%), Positives = 31/69 (44%) Frame = -2 Query: 314 KGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGKLRPRLNTGERPIANKYREGKMKR 135 K AP RV G + G G G + +SGGK+RP G+ P+ K R K Sbjct: 13 KHAPKRVGRGIG----SGLGKTGGRGHKGQKSRSGGKVRPGFEGGQMPL--KQRLPKFGF 66 Query: 134 TLKRESKSA 108 T ++ SA Sbjct: 67 TSRKSLVSA 75
>RL15_VIBPA (Q87SZ4) 50S ribosomal protein L15| Length = 144 Score = 28.1 bits (61), Expect = 5.7 Identities = 23/69 (33%), Positives = 31/69 (44%) Frame = -2 Query: 314 KGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGKLRPRLNTGERPIANKYREGKMKR 135 K AP RV G + G G G + +SGGK+RP G+ P+ K R K Sbjct: 13 KHAPKRVGRGIG----SGLGKTGGRGHKGQKSRSGGKVRPGFEGGQMPL--KQRLPKFGF 66 Query: 134 TLKRESKSA 108 T ++ SA Sbjct: 67 TSRKSLVSA 75
>YXWK_CAEEL (Q21184) Putative cuticle collagen F55C10.3| Length = 266 Score = 28.1 bits (61), Expect = 5.7 Identities = 17/52 (32%), Positives = 21/52 (40%) Frame = -2 Query: 311 GAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGKLRPRLNTGERPIANKY 156 G PG P P P P G + G G P + G+ GE+ I KY Sbjct: 201 GQPGHDGQPGAPGPKGPNGNPGQPGADG-NPGAPGQSGTPGGVGEKGICPKY 251
>COBA2_MOUSE (Q64739) Collagen alpha-2(XI) chain precursor| Length = 1736 Score = 28.1 bits (61), Expect = 5.7 Identities = 14/35 (40%), Positives = 17/35 (48%) Frame = -2 Query: 314 KGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSG 210 KG PG V AP PV P G + G G++ G Sbjct: 1338 KGDPGAVGAPGKTGPVGPAGLAGKPGPDGLRGLPG 1372 Score = 28.1 bits (61), Expect = 5.7 Identities = 13/34 (38%), Positives = 17/34 (50%) Frame = -2 Query: 311 GAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSG 210 G G+ P P V P+G ESG +G + SG Sbjct: 913 GFQGKTGPPGPPGVVGPQGTAGESGPMGERGHSG 946
>RPGF1_HUMAN (Q13905) Rap guanine nucleotide exchange factor 1 (Guanine| nucleotide-releasing factor 2) (C3G protein) (CRK SH3-binding GNRP) Length = 1077 Score = 28.1 bits (61), Expect = 5.7 Identities = 19/73 (26%), Positives = 29/73 (39%) Frame = -1 Query: 279 PGPCRPTRRRQRVGLFGNAAQIGR*TPSKAKYRRETDSEQVPRGKDEKDFEKRVKECLKL 100 P P P ++RQ A + A R T +P G + +DF+ +L Sbjct: 282 PPPALPPKKRQSAPSPTRVAVV-------APMSRATSGSSLPVGINRQDFDVDCYAQRRL 334 Query: 99 PGGKRMGAGDAPR 61 GG G++PR Sbjct: 335 SGGSHSYGGESPR 347
>CO5A2_HUMAN (P05997) Collagen alpha-2(V) chain precursor| Length = 1496 Score = 28.1 bits (61), Expect = 5.7 Identities = 14/42 (33%), Positives = 18/42 (42%) Frame = -2 Query: 314 KGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGKLRPRL 189 KG PG P P P G + G +GM + G + P L Sbjct: 965 KGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGL 1006
>CL46_BOVIN (Q8MHZ9) Collectin-46 precursor (CL-46) (46 kDa collectin)| Length = 371 Score = 28.1 bits (61), Expect = 5.7 Identities = 17/47 (36%), Positives = 22/47 (46%) Frame = -2 Query: 314 KGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGKLRPRLNTGER 174 +GAPG + AP P GA+ G G + G K R + GER Sbjct: 162 RGAPGELGAPGSAGVAGPAGAIGPQGPSGARGPPGLK-GDRGDPGER 207
>ZBT38_HUMAN (Q8NAP3) Zinc finger and BTB domain-containing protein 38| Length = 1195 Score = 28.1 bits (61), Expect = 5.7 Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 10/90 (11%) Frame = -1 Query: 294 ESPVRP----GPCRPTRRRQRVGLFGNAAQIGR*TPS-KAKYRRETDSEQVPRGKDEKDF 130 + P RP P + +R+ +++ + G +PS K KY E D +D+ Sbjct: 913 DKPWRPYYNYKPKKKSRQLKKMRKVNWRKEHGNRSPSHKCKYPAELDCAVGKAPQDKPFE 972 Query: 129 EKRVKECLKLP-----GGKRMGAGDAPRPY 55 E+ KE KL G K +GAG+ RP+ Sbjct: 973 EEETKEMPKLQCELCDGDKAVGAGNQGRPH 1002
>CO8A1_RABIT (P14282) Collagen alpha-1(VIII) chain precursor (Endothelial| collagen) Length = 744 Score = 28.1 bits (61), Expect = 5.7 Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 6/47 (12%) Frame = -2 Query: 311 GAPGRVRAPSGPDPVAPRGAV------NESGCLGMQPKSGGKLRPRL 189 G PG P P P+ P GA+ E G +G Q G K P L Sbjct: 387 GPPGEPGLPGIPGPMGPPGAIGFPGPKGEGGIVGPQGPPGPKGEPGL 433
>CO8A1_HUMAN (P27658) Collagen alpha-1(VIII) chain precursor (Endothelial| collagen) Length = 744 Score = 28.1 bits (61), Expect = 5.7 Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 6/47 (12%) Frame = -2 Query: 311 GAPGRVRAPSGPDPVAPRGAV------NESGCLGMQPKSGGKLRPRL 189 G PG P P P+ P GA+ E G +G Q G K P L Sbjct: 387 GPPGEPGLPGIPGPMGPPGAIGFPGPKGEGGIVGPQGPPGPKGEPGL 433
>CT086_HUMAN (Q9BZ19) Hypothetical protein C20orf86| Length = 240 Score = 28.1 bits (61), Expect = 5.7 Identities = 16/53 (30%), Positives = 25/53 (47%) Frame = -2 Query: 311 GAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGKLRPRLNTGERPIANKYR 153 GA R+P G P+ A+ S C+ + + G + R GE PI+ +R Sbjct: 138 GASCLSRSPLGRTPLHVAAAMGRSDCIILLLQHGASIHDRDAKGETPISIAHR 190
>FOXC1_HUMAN (Q12948) Forkhead box protein C1 (Forkhead-related protein FKHL7)| (Forkhead-related transcription factor 3) (FREAC-3) Length = 553 Score = 28.1 bits (61), Expect = 5.7 Identities = 17/52 (32%), Positives = 26/52 (50%) Frame = +1 Query: 172 GLSPVFSLGRSLPPDLGCIPKQPDSLTAPRGATGSGPDGALTLPGAPFQGTW 327 G++P +LG + P + P S T+ G++G G GA GA GT+ Sbjct: 343 GIAPPLALG-AYSPGQSSLYSSPCSQTSSAGSSGGGGGGAGAAGGAGGAGTY 393
>DCBD2_MOUSE (Q91ZV3) Discoidin, CUB and LCCL domain-containing protein 2| precursor (Endothelial and smooth muscle cell-derived neuropilin-like protein) Length = 769 Score = 28.1 bits (61), Expect = 5.7 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 5/40 (12%) Frame = -2 Query: 293 RAPSGPD-PVAP----RGAVNESGCLGMQPKSGGKLRPRL 189 R+P GP P AP R A+ +GC + P RPRL Sbjct: 11 RSPQGPGGPAAPAATGRAALPSAGCCPLPPGRNSSSRPRL 50
>SPESP_MACFA (Q95LJ2) Sperm equatorial segment protein 1 precursor| Length = 352 Score = 28.1 bits (61), Expect = 5.7 Identities = 24/69 (34%), Positives = 32/69 (46%) Frame = -3 Query: 292 EPRPARTLSPHEAPSTSRVVWECSPNRAVNSVQG*IQARDR*RTSTARER*KGL*KESQR 113 EP P T EAP T VV E S + V S + + DR ST E + ES+ Sbjct: 146 EPEPEPTARQTEAPRTLPVVTESSTSPYVTSYKSPVTTSDR---STGIE----ISTESED 198 Query: 112 VLEIAGREA 86 V +++G A Sbjct: 199 VPQLSGETA 207
>GLGB_YEAST (P32775) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) Length = 704 Score = 28.1 bits (61), Expect = 5.7 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = +1 Query: 82 HPLPSRQFQALFDSLFKVLFIFP 150 HPLP+ F DS KV+FI P Sbjct: 115 HPLPNGDFAIPHDSKIKVMFILP 137
>CO8A1_MOUSE (Q00780) Collagen alpha-1(VIII) chain precursor| Length = 743 Score = 28.1 bits (61), Expect = 5.7 Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 6/47 (12%) Frame = -2 Query: 311 GAPGRVRAPSGPDPVAPRGAV------NESGCLGMQPKSGGKLRPRL 189 G PG P P P+ P GA+ E G +G Q G K P L Sbjct: 387 GPPGEPGLPGIPGPMGPPGAIGFPGPKGEGGVVGPQGPPGPKGEPGL 433
>RCOR2_HUMAN (Q8IZ40) REST corepressor 2| Length = 523 Score = 28.1 bits (61), Expect = 5.7 Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 6/52 (11%) Frame = +1 Query: 181 PVFSLGRSLPPDLGCIPKQPD------SLTAPRGATGSGPDGALTLPGAPFQ 318 P GR L P L P QP +L APR + GP TL GAP + Sbjct: 468 PPLQQGRFLQPRLA--PNQPPPPLIRPALAAPRHSARPGPQPPPTLIGAPLE 517
>IF2_STRAW (Q82K53) Translation initiation factor IF-2| Length = 1046 Score = 23.1 bits (48), Expect(2) = 6.9 Identities = 10/18 (55%), Positives = 10/18 (55%) Frame = -1 Query: 99 PGGKRMGAGDAPRPYAER 46 PGG R G PRP A R Sbjct: 278 PGGARPTPGGMPRPQAPR 295 Score = 23.1 bits (48), Expect(2) = 6.9 Identities = 15/42 (35%), Positives = 18/42 (42%) Frame = -2 Query: 305 PGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGKLRPRLNTG 180 PG AP GP P+GA + Q GG RP+ G Sbjct: 241 PGGAGAPGGP---RPQGAGGQDRAPRPQGGPGGAPRPQGGPG 279
>COL39_CAEEL (Q09455) Cuticle collagen 39 precursor| Length = 323 Score = 27.7 bits (60), Expect = 7.5 Identities = 13/34 (38%), Positives = 15/34 (44%) Frame = -2 Query: 311 GAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSG 210 G+PG AP P P P G G G Q +G Sbjct: 138 GSPGPAGAPGAPGPQGPNGQPGHPGQGGSQGPAG 171
>COBA2_HUMAN (P13942) Collagen alpha-2(XI) chain precursor| Length = 1736 Score = 27.7 bits (60), Expect = 7.5 Identities = 13/35 (37%), Positives = 17/35 (48%) Frame = -2 Query: 314 KGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSG 210 KG PG + AP PV P G + G G++ G Sbjct: 1338 KGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPG 1372
>GRASP_RAT (Q8R4T5) General receptor for phosphoinositides 1-associated| scaffold protein (GRP1-associated scaffold protein) (Tamalin) (95 kDa postsynaptic density protein discs-large ZO-1 domain-containing protein) (PSD-95 PDZ domain-containing protein) Length = 394 Score = 27.7 bits (60), Expect = 7.5 Identities = 16/34 (47%), Positives = 17/34 (50%) Frame = +1 Query: 211 PDLGCIPKQPDSLTAPRGATGSGPDGALTLPGAP 312 PDL + PDS A T SGP A PGAP Sbjct: 19 PDLA--GRAPDSEAARAAPTPSGPPAAAAPPGAP 50
>COL7_CAEEL (P18832) Cuticle collagen 7 precursor| Length = 316 Score = 27.7 bits (60), Expect = 7.5 Identities = 17/34 (50%), Positives = 17/34 (50%), Gaps = 1/34 (2%) Frame = +1 Query: 223 CIPKQPDSLTAPRGATGS-GPDGALTLPGAPFQG 321 CI K P L P G G GP G PGAP QG Sbjct: 133 CI-KCPQGLPGPAGVPGQPGPKGPNGNPGAPAQG 165
>NARB_SYNP7 (P39458) Nitrate reductase (EC 1.7.99.4)| Length = 729 Score = 27.7 bits (60), Expect = 7.5 Identities = 11/24 (45%), Positives = 13/24 (54%) Frame = +3 Query: 252 GASWGDRVRAGRGSHPPRRPFPGD 323 GA WGDR A +HP P G+ Sbjct: 687 GALWGDRTEANALTHPAACPISGE 710
>NRX2A_RAT (Q63374) Neurexin-2-alpha precursor (Neurexin II-alpha)| Length = 1715 Score = 27.7 bits (60), Expect = 7.5 Identities = 12/22 (54%), Positives = 14/22 (63%) Frame = -2 Query: 311 GAPGRVRAPSGPDPVAPRGAVN 246 GAPG + APS P P P G +N Sbjct: 1548 GAPGVLLAPSAPAPNLPAGKMN 1569
>CO1A2_MOUSE (Q01149) Collagen alpha-2(I) chain precursor| Length = 1372 Score = 27.7 bits (60), Expect = 7.5 Identities = 30/96 (31%), Positives = 34/96 (35%), Gaps = 12/96 (12%) Frame = -2 Query: 311 GAPGRVRAPSGPDP------------VAPRGAVNESGCLGMQPKSGGKLRPRLNTGERPI 168 G PG AP P P RG V E G G + +SG K P + P Sbjct: 319 GLPGVAGAPGLPGPRGIPGPAGAAGATGARGLVGEPGPAGSKGESGNKGEPGSVGAQGPP 378 Query: 167 ANKYREGKMKRTLKRESKSA*NCREGSGWGPAMRPG 60 EG KR E+ SA GPA PG Sbjct: 379 GPSGEEG--KRGSPGEAGSA---------GPAGPPG 403
>CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 27.7 bits (60), Expect = 7.5 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 6/51 (11%) Frame = -2 Query: 311 GAPGRVRAPSGPD-PVAPRGAVNESGCLGMQPKSG-----GKLRPRLNTGE 177 GAPG + PSG P PRG +G G +G G PR TGE Sbjct: 1113 GAPGE-QGPSGASGPAGPRGPPGSAGAAGKDGLNGLPGPIGPPGPRGRTGE 1162
>YT35_STRFR (P20186) Hypothetical 35.5 kDa protein in transposon Tn4556| Length = 348 Score = 27.7 bits (60), Expect = 7.5 Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 4/88 (4%) Frame = -2 Query: 308 APGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGKL----RPRLNTGERPIANKYREGKM 141 +PG P P P+A R + + +GC P + G L RP ++ P A Sbjct: 200 SPGGTVQPKSPAPLAARCSASRAGC----PTAAGSLLPAPRPPASSASSPQAAAPAAPSA 255 Query: 140 KRTLKRESKSA*NCREGSGWGPAMRPGR 57 R +R + SA P+ RP R Sbjct: 256 TRLPRRTTPSAPR--------PSSRPAR 275
>CO9A2_HUMAN (Q14055) Collagen alpha-2(IX) chain precursor| Length = 689 Score = 27.7 bits (60), Expect = 7.5 Identities = 13/37 (35%), Positives = 16/37 (43%) Frame = -2 Query: 311 GAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGKL 201 GAPG P P PV G + CLG + +L Sbjct: 644 GAPGEAGRPGLPGPVGLPGFCEPAACLGASAYASARL 680
>NRX2B_RAT (Q63376) Neurexin-2-beta precursor (Neurexin II-beta)| Length = 662 Score = 27.7 bits (60), Expect = 7.5 Identities = 12/22 (54%), Positives = 14/22 (63%) Frame = -2 Query: 311 GAPGRVRAPSGPDPVAPRGAVN 246 GAPG + APS P P P G +N Sbjct: 495 GAPGVLLAPSAPAPNLPAGKMN 516
>CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long-chain collagen)| (LC collagen) Length = 2944 Score = 27.7 bits (60), Expect = 7.5 Identities = 20/47 (42%), Positives = 21/47 (44%) Frame = -2 Query: 314 KGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGKLRPRLNTGER 174 KG PGR P P PV PRG E G G + G P GER Sbjct: 1615 KGDPGR---PGPPGPVGPRGRDGEVGEKGDEGPPGDPGLPG-KAGER 1657 Score = 23.5 bits (49), Expect(2) = 8.1 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = -3 Query: 97 GREADGGRRCAPAVCGTASAGP 32 G + + GR PAV G A AGP Sbjct: 1531 GEKGEPGRPGDPAVVGPAVAGP 1552 Score = 22.3 bits (46), Expect(2) = 8.1 Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 2/48 (4%) Frame = -2 Query: 311 GAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSG--GKLRPRLNTGER 174 GAPG P P PRG G +G + G G L GER Sbjct: 1453 GAPGLPGQPGSPGEQGPRG---PPGAIGPKGDRGFPGPLGEAGEKGER 1497
>RL15_VIBCH (Q9KP03) 50S ribosomal protein L15| Length = 144 Score = 27.3 bits (59), Expect = 9.8 Identities = 17/50 (34%), Positives = 24/50 (48%) Frame = -2 Query: 257 GAVNESGCLGMQPKSGGKLRPRLNTGERPIANKYREGKMKRTLKRESKSA 108 G G G + +SGGK+RP G+ P+ K R K T ++ SA Sbjct: 28 GKTGGRGHKGQKSRSGGKVRPGFEGGQMPL--KQRLPKFGFTSRKSFVSA 75
>SYT_PYRFU (Q8U176) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA| ligase) (ThrRS) Length = 625 Score = 27.3 bits (59), Expect = 9.8 Identities = 15/41 (36%), Positives = 22/41 (53%) Frame = -1 Query: 180 RETDSEQVPRGKDEKDFEKRVKECLKLPGGKRMGAGDAPRP 58 +ET + V R +D K +E R++E +K K G PRP Sbjct: 572 KETGTITVRRREDGKQYETRIEELIKEIKQKTEGFPYKPRP 612
>PGCA_RAT (P07897) Aggrecan core protein precursor (Cartilage-specific| proteoglycan core protein) (CSPCP) Length = 2124 Score = 27.3 bits (59), Expect = 9.8 Identities = 15/54 (27%), Positives = 26/54 (48%) Frame = -2 Query: 326 QVPWKGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGKLRPRLNTGERPIA 165 ++PW P R PSG + + + + +G L P SGG++ +G I+ Sbjct: 873 EIPWSSTPTVDRLPSGGESLEGSASASGTGDLSGLP-SGGEITETSASGTEEIS 925
>EFNB3_MOUSE (O35393) Ephrin-B3 precursor| Length = 340 Score = 27.3 bits (59), Expect = 9.8 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%) Frame = +1 Query: 172 GLSPVFSLGRSLPPDLGCIPKQPDS---LTAPRGATGSGPDGALTLPGAP 312 G+ + +G+S P G +P++P S + RGA S G T+PG P Sbjct: 160 GMKVLLRVGQS--PRGGAVPRKPVSEMPMERDRGAAHSAEPGRDTIPGDP 207
>CONG_BOVIN (P23805) Conglutinin precursor| Length = 371 Score = 27.3 bits (59), Expect = 9.8 Identities = 14/37 (37%), Positives = 16/37 (43%) Frame = -2 Query: 314 KGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGK 204 KGAPG AP P GA+ G G + G K Sbjct: 162 KGAPGETGAPGRAGVTGPSGAIGPQGPSGARGPPGLK 198
>CO6A3_HUMAN (P12111) Collagen alpha-3(VI) chain precursor| Length = 3176 Score = 27.3 bits (59), Expect = 9.8 Identities = 13/39 (33%), Positives = 15/39 (38%) Frame = -2 Query: 311 GAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGKLRP 195 G PGR P GP G G G + GG +P Sbjct: 2180 GVPGRDGVPGGPGETGKNGGFGRRGPPGAKGNKGGPGQP 2218
>GCSPA_AERPE (Q9YA15) Probable glycine dehydrogenase [decarboxylating] subunit 1| (EC 1.4.4.2) (Glycine decarboxylase subunit 1) (Glycine cleavage system P-protein subunit 1) Length = 471 Score = 27.3 bits (59), Expect = 9.8 Identities = 18/61 (29%), Positives = 27/61 (44%) Frame = +1 Query: 82 HPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPVFSLGRSLPPDLGCIPKQPDSLTAPR 261 HP +A+ D + + AIG+S V L R +PP + P++ DSL Sbjct: 9 HPWIPNSHKAILDEMLE-----------AIGVSSVDDLYRDIPPTILLSPEEWDSLPIGE 57 Query: 262 G 264 G Sbjct: 58 G 58
>WEB1_YEAST (P38968) Protein WEB1 (Protein transport protein SEC31)| Length = 1273 Score = 27.3 bits (59), Expect = 9.8 Identities = 10/42 (23%), Positives = 20/42 (47%) Frame = -2 Query: 293 RAPSGPDPVAPRGAVNESGCLGMQPKSGGKLRPRLNTGERPI 168 + P+GP P++ + N+ + P G P L++ P+ Sbjct: 1102 KPPTGPPPISMKKRSNKLASIEQNPSQGATYPPTLSSSASPL 1143
>SPTB2_HUMAN (Q01082) Spectrin beta chain, brain 1 (Spectrin, non-erythroid beta| chain 1) (Beta-II spectrin) (Fodrin beta chain) Length = 2364 Score = 27.3 bits (59), Expect = 9.8 Identities = 12/27 (44%), Positives = 19/27 (70%) Frame = -1 Query: 180 RETDSEQVPRGKDEKDFEKRVKECLKL 100 RET SE + R KD +D +K +++C +L Sbjct: 1261 RETASELLMRLKDNRDLQKFLQDCQEL 1287
>NRX2A_HUMAN (Q9P2S2) Neurexin-2-alpha precursor (Neurexin II-alpha)| Length = 1712 Score = 27.3 bits (59), Expect = 9.8 Identities = 12/22 (54%), Positives = 14/22 (63%) Frame = -2 Query: 311 GAPGRVRAPSGPDPVAPRGAVN 246 GAPG + APS P P P G +N Sbjct: 1545 GAPGVLFAPSAPAPNLPAGKMN 1566
>CO4A2_HUMAN (P08572) Collagen alpha-2(IV) chain precursor| Length = 1712 Score = 27.3 bits (59), Expect = 9.8 Identities = 14/34 (41%), Positives = 14/34 (41%) Frame = -2 Query: 311 GAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSG 210 G PG P P PRG GC G Q SG Sbjct: 112 GFPGADGIPGHPGQGGPRGRPGYDGCNGTQGDSG 145
>YGIK_SALTY (P40800) Hypothetical protein ygiK| Length = 435 Score = 27.3 bits (59), Expect = 9.8 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 9/43 (20%) Frame = +1 Query: 115 FDSLFKVLFIFPSRYL---------FAIGLSPVFSLGRSLPPD 216 F+ ++ ++ +F S + FAIGLS +FS+ +LPPD Sbjct: 3 FEYIYPIIVLFGSFAIILAVGVPITFAIGLSSLFSILIALPPD 45
>PALI_MAGGR (Q51MB1) pH-response regulator protein palI/RIM9| Length = 736 Score = 27.3 bits (59), Expect = 9.8 Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 9/100 (9%) Frame = -2 Query: 311 GAPGRVRAPSGPDPVAPRGAVNESGCLG--MQPKSGGKLRPRLNT-------GERPIANK 159 GAP R R + VAPR A + G + ++GG++ P +N E P ++ Sbjct: 591 GAPARSRTSEYYEDVAPRFATPDPSLRGTPVPGQAGGRIPPPINLPAGGPDFDEMPDGSR 650 Query: 158 YREGKMKRTLKRESKSA*NCREGSGWGPAMRPGRMRNGFG 39 + T S+ N R W P P M G+G Sbjct: 651 SPAASERSTFTSISQRGINPR----WNPP--PPSMMPGYG 684
>NRX2B_HUMAN (P58401) Neurexin-2-beta precursor (Neurexin II-beta)| Length = 666 Score = 27.3 bits (59), Expect = 9.8 Identities = 12/22 (54%), Positives = 14/22 (63%) Frame = -2 Query: 311 GAPGRVRAPSGPDPVAPRGAVN 246 GAPG + APS P P P G +N Sbjct: 499 GAPGVLFAPSAPAPNLPAGKMN 520
>CO1A2_CANFA (O46392) Collagen alpha-2(I) chain precursor| Length = 1366 Score = 27.3 bits (59), Expect = 9.8 Identities = 21/62 (33%), Positives = 24/62 (38%), Gaps = 6/62 (9%) Frame = -2 Query: 311 GAPGRVRAPSGPDPVAP------RGAVNESGCLGMQPKSGGKLRPRLNTGERPIANKYRE 150 GAPG P PV RG V E G G + +SG K P + P E Sbjct: 319 GAPGLPGPRGIPGPVGAAGATGARGIVGEPGPAGSKGESGNKGEPGSAGAQGPPGPSGEE 378 Query: 149 GK 144 GK Sbjct: 379 GK 380
>PHK_NOCFA (Q5Z066) Probable phosphoketolase (EC 4.1.2.-)| Length = 822 Score = 27.3 bits (59), Expect = 9.8 Identities = 10/23 (43%), Positives = 14/23 (60%) Frame = +1 Query: 79 PHPLPSRQFQALFDSLFKVLFIF 147 PH LP R+F LF + ++F F Sbjct: 699 PHGLPDREFDTLFTTASPIIFAF 721
>CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor| Length = 1464 Score = 27.3 bits (59), Expect = 9.8 Identities = 13/34 (38%), Positives = 15/34 (44%) Frame = -2 Query: 311 GAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSG 210 G PG AP P PV P G + G G +G Sbjct: 1043 GPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAG 1076
>CO6A1_HUMAN (P12109) Collagen alpha-1(VI) chain precursor| Length = 1028 Score = 27.3 bits (59), Expect = 9.8 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%) Frame = -2 Query: 314 KGAPGRVRAPSG-PDPVAPRGAVNESGCLGMQPKSG 210 +G PG R P G P P PRG E+G G Q + G Sbjct: 424 RGGPGE-RGPRGTPGPRGPRGDPGEAGPQGDQGREG 458
>MED18_SCHPO (O14198) RNA polymerase II mediator complex subunit 18 (Cell| separation protein sep11) (RNA polymerase II mediator complex protein pmc6) Length = 207 Score = 27.3 bits (59), Expect = 9.8 Identities = 19/53 (35%), Positives = 30/53 (56%) Frame = +1 Query: 88 LPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPVFSLGRSLPPDLGCIPKQPDS 246 +PSR+F+A+ +SL K L + F + P + +PP+L P+QPDS Sbjct: 10 VPSRRFEAVVNSLSKTLDGPKTILEFWVVYRP-----KDVPPNL---PRQPDS 54
>CO4A1_HUMAN (P02462) Collagen alpha-1(IV) chain precursor| Length = 1669 Score = 27.3 bits (59), Expect = 9.8 Identities = 14/41 (34%), Positives = 16/41 (39%) Frame = -2 Query: 311 GAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGKLRPRL 189 G G P P P P G E G G+ +G K P L Sbjct: 1130 GVKGEAGLPGTPGPTGPAGQKGEPGSDGIPGSAGEKGEPGL 1170 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,837,603 Number of Sequences: 219361 Number of extensions: 1313441 Number of successful extensions: 6693 Number of sequences better than 10.0: 97 Number of HSP's better than 10.0 without gapping: 5182 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6641 length of database: 80,573,946 effective HSP length: 85 effective length of database: 61,928,261 effective search space used: 1486278264 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
