ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet124a12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF250934.1|AF250934 Hordeum vulgare germin B (GerB) gene, com... 557 e-156
2gb|AF250935.1|AF250935 Hordeum vulgare germin F (GerF) gene, com... 515 e-143
3gb|AF250936.1|AF250936 Hordeum vulgare germin D (GerD) gene, com... 98 2e-17
4gb|AF005084.1|AF005084 Triticum aestivum oxalate oxidase mRNA, p... 74 3e-10
5gb|AF250937.1|AF250937 Hordeum vulgare germin E (GerE) gene, par... 58 2e-05
6gb|AC141634.4| Mus musculus BAC clone RP24-69A18 from chromosome... 50 0.004
7gb|AC122387.3| Mus musculus BAC clone RP24-76F22 from 6, complet... 50 0.004
8ref|XM_480823.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.00
9emb|Z69662.1|CEF56D5 Caenorhabditis elegans Cosmid F56D5, comple... 42 1.00
10gb|BC010109.2| Homo sapiens CD99 molecule, mRNA (cDNA clone MGC:... 42 1.00
11gb|BC002584.2| Homo sapiens CD99 molecule, mRNA (cDNA clone MGC:... 42 1.00
12gb|BC003147.1| Homo sapiens CD99 molecule, mRNA (cDNA clone MGC:... 42 1.00
13gb|BC024310.1| Homo sapiens CD99 molecule, mRNA (cDNA clone MGC:... 42 1.00
14gb|BC021620.1| Homo sapiens CD99 molecule, mRNA (cDNA clone MGC:... 42 1.00
15ref|NM_002414.3| Homo sapiens CD99 molecule (CD99), mRNA 42 1.00
16emb|CR620339.1| full-length cDNA clone CS0DI082YB19 of Placenta ... 42 1.00
17emb|CR617471.1| full-length cDNA clone CS0DI036YH18 of Placenta ... 42 1.00
18emb|CR615331.1| full-length cDNA clone CS0DE013YA05 of Placenta ... 42 1.00
19emb|CR613828.1| full-length cDNA clone CS0DL011YA16 of B cells (... 42 1.00
20emb|CR613826.1| full-length cDNA clone CS0DL011YA18 of B cells (... 42 1.00
21emb|CR613006.1| full-length cDNA clone CS0DI056YM24 of Placenta ... 42 1.00
22emb|CR612683.1| full-length cDNA clone CS0DI044YA19 of Placenta ... 42 1.00
23emb|CR611995.1| full-length cDNA clone CS0DJ006YG11 of T cells (... 42 1.00
24emb|CR611199.1| full-length cDNA clone CS0DJ007YA14 of T cells (... 42 1.00
25emb|CR610873.1| full-length cDNA clone CS0DI041YC12 of Placenta ... 42 1.00
26emb|CR606510.1| full-length cDNA clone CS0DL005YG07 of B cells (... 42 1.00
27emb|CR605688.1| full-length cDNA clone CS0DI009YO21 of Placenta ... 42 1.00
28emb|CR599762.1| full-length cDNA clone CS0DI009YG12 of Placenta ... 42 1.00
29emb|CR590061.1| full-length cDNA clone CS0DI062YA02 of Placenta ... 42 1.00
30emb|CR450286.1| Homo sapiens full open reading frame cDNA clone ... 42 1.00
31dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.00
32gb|AC097457.2| Homo sapiens BAC clone RP11-3J1 from 4, complete ... 42 1.00
33gb|AY766185.1| Uncultured murine large bowel bacterium BAC 31B, ... 42 1.00
34dbj|AP004559.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.00
35dbj|AK059812.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.00
36emb|AL359398.2|CNS05TE1 Human chromosome 14 DNA sequence BAC R-3... 42 1.00
37emb|AL139354.6|CNS01DXK Human chromosome 14 DNA sequence BAC R-9... 42 1.00
38gb|U82164.1|HSU82164 Human transmembrane protein CD99 type II mR... 42 1.00
39emb|X16996.1|HSE2 Human mRNA for T-cell surface glycoprotein E2 42 1.00
40gb|M16279.1|HUMMIC2A Human MIC2 mRNA, complete cds 42 1.00
41gb|AC102324.9| Mus musculus chromosome 1, clone RP24-476A18, com... 40 3.9
42ref|XM_480457.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.9
43gb|AC161502.9| Mus musculus chromosome 1, clone RP23-33E21, comp... 40 3.9
44gb|AC008255.9| Drosophila melanogaster clone BACR48D17, complete... 40 3.9
45emb|CR936241.17| Zebrafish DNA sequence from clone DKEY-18J18 in... 40 3.9
46emb|AL359921.13| Human DNA sequence from clone RP11-385F5 on chr... 40 3.9
47emb|AJ630365.1| Canis familiaris MHC class II region on chromoso... 40 3.9
48gb|AC157542.11| Mus musculus chromosome 1, clone RP23-115I1, com... 40 3.9
49gb|AC110062.4| Homo sapiens chromosome 18, clone CTD-2125N24, co... 40 3.9
50gb|AC159652.6| Mus musculus 10 BAC RP24-123H21 (Roswell Park Can... 40 3.9
51gb|AC073897.6|AC073897 Homo sapiens chromosome 15 clone RP11-718... 40 3.9
52gb|AC018488.7|AC018488 Drosophila melanogaster, chromosome X, re... 40 3.9
53gb|AC006209.25| Homo sapiens X BAC GS1-546D14 (Genome Systems Hu... 40 3.9
54gb|AC153983.7| Mus musculus 6 BAC RP24-479J14 (Roswell Park Canc... 40 3.9
55gb|AC078793.13| Homo sapiens 3 BAC RP11-693A13 (Roswell Park Can... 40 3.9
56dbj|AP005531.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.9
57dbj|AP005505.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.9
58dbj|AK061029.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.9
59gb|AC153931.2| Mus musculus 10 BAC RP24-147A18 (Roswell Park Can... 40 3.9
60gb|AE003498.5| Drosophila melanogaster chromosome X, section 50 ... 40 3.9
61gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome 40 3.9
62gb|AF032976.1|AF032976 Oryza sativa germin-like protein 6 (GER6)... 40 3.9 
>gb|AF250934.1|AF250934 Hordeum vulgare germin B (GerB) gene, complete cds
          Length = 2798

 Score =  557 bits (281), Expect = e-156
 Identities = 296/301 (98%)
 Strand = Plus / Minus

                                                                        
Query: 1    gcaaaaaggcaaaggagcacctttgtattccattcattaaacagggaaaacaatcatcac 60
            |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 2731 gcaaaaaggcaaaggagcacctctgtattccattcattaaacagtgaaaacaatcatcac 2672

                                                                        
Query: 61   caacacattctgacatgaatctgacaagaaacatatcatgtcacgcttcaaaaggaaaat 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2671 caacacattctgacatgaatctgacaagaaacatatcatgtcacgcttcaaaaggaaaat 2612

                                                                        
Query: 121  gaaaacacagctcacaaccatgcatgcatacgtattattacatgccatttattctatata 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2611 gaaaacacagctcacaaccatgcatgcatacgtattattacatgccatttattctatata 2552

                                                                        
Query: 181  ctagcattacatatgaactttccatatgcccaaatgaaagagagtatctagtagttgtta 240
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 2551 ctagcattacatatgaactttccatatgcccagatgaaagagagtatctagtagttgtta 2492

                                                                        
Query: 241  ttctcccaaaactgagattgaagccagtgaatcaaatccttctccacctgaaacgccgtg 300
            |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 2491 ttctcccagaactgagattgaagccagtgaatcagatccttctccacctgaaacgccgtg 2432

             
Query: 301  g 301
            |
Sbjct: 2431 g 2431
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>gb|AF250935.1|AF250935 Hordeum vulgare germin F (GerF) gene, complete cds
          Length = 2689

 Score =  515 bits (260), Expect = e-143
 Identities = 293/303 (96%), Gaps = 2/303 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    gcaaaaaggcaaaggagcacctttgtattccattcattaaacagggaaaacaatcatcac 60
            |||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 2622 gcaacaaggcaaaggagcacctctgtattccattcattaaacagtgaaaacaatcatcac 2563

                                                                        
Query: 61   caacacattctgacatgaatctgacaagaaacatatcatgtcacgcttcaaaaggaaaat 120
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 2562 caacacattctgacatgaatccgacaagaaacatatcatgtcacgcttcaaaaggaaaat 2503

                                                                        
Query: 121  gaaaa--cacagctcacaaccatgcatgcatacgtattattacatgccatttattctata 178
            |||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 2502 gaaaattcacagctcacaaccatgcatgcatacgtattactacatgccatttattctata 2443

                                                                        
Query: 179  tactagcattacatatgaactttccatatgcccaaatgaaagagagtatctagtagttgt 238
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 2442 tactagcattacatatgaactttccatatgcccagatgaaagagagtatctagtagttgt 2383

                                                                        
Query: 239  tattctcccaaaactgagattgaagccagtgaatcaaatccttctccacctgaaacgccg 298
            |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 2382 tattctcccagaactgagattgaagccagtgaatcagatccttctccacctgaaacgccg 2323

               
Query: 299  tgg 301
            |||
Sbjct: 2322 tgg 2320
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>gb|AF250936.1|AF250936 Hordeum vulgare germin D (GerD) gene, complete cds
          Length = 1272

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 67/73 (91%)
 Strand = Plus / Minus

                                                                        
Query: 229  tagtagttgttattctcccaaaactgagattgaagccagtgaatcaaatccttctccacc 288
            ||||||||||| |||||||| ||||||||||| |||||||| || | |||||||||||||
Sbjct: 1251 tagtagttgttgttctcccagaactgagattggagccagtgtattagatccttctccacc 1192

                         
Query: 289  tgaaacgccgtgg 301
            |||||||||||||
Sbjct: 1191 tgaaacgccgtgg 1179
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>gb|AF005084.1|AF005084 Triticum aestivum oxalate oxidase mRNA, partial cds
          Length = 837

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 64/73 (87%)
 Strand = Plus / Minus

                                                                       
Query: 229 tagtagttgttattctcccaaaactgagattgaagccagtgaatcaaatccttctccacc 288
           ||||||| |||||||||||| ||||||||||| ||||| | |||||  | ||| ||||||
Sbjct: 667 tagtagtggttattctcccagaactgagattggagccaatcaatcagtttcttttccacc 608

                        
Query: 289 tgaaacgccgtgg 301
           |||||||||||||
Sbjct: 607 tgaaacgccgtgg 595
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>gb|AF250937.1|AF250937 Hordeum vulgare germin E (GerE) gene, partial cds
          Length = 783

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 62/73 (84%)
 Strand = Plus / Minus

                                                                       
Query: 229 tagtagttgttattctcccaaaactgagattgaagccagtgaatcaaatccttctccacc 288
           ||||||| |||||| ||||| ||||||||||| ||||| | |||||  | ||| ||||||
Sbjct: 645 tagtagtggttattttcccagaactgagattggagccaatcaatcagtttcttttccacc 586

                        
Query: 289 tgaaacgccgtgg 301
           ||||| |||||||
Sbjct: 585 tgaaatgccgtgg 573
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>gb|AC141634.4| Mus musculus BAC clone RP24-69A18 from chromosome 6, complete sequence
          Length = 227680

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                      
Query: 173   tctatatactagcattacatatgaa 197
             |||||||||||||||||||||||||
Sbjct: 55834 tctatatactagcattacatatgaa 55858
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>gb|AC122387.3| Mus musculus BAC clone RP24-76F22 from 6, complete sequence
          Length = 191058

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                       
Query: 173    tctatatactagcattacatatgaa 197
              |||||||||||||||||||||||||
Sbjct: 190753 tctatatactagcattacatatgaa 190777
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>ref|XM_480823.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 995

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 48/57 (84%)
 Strand = Plus / Minus

                                                                    
Query: 241 ttctcccaaaactgagattgaagccagtgaatcaaatccttctccacctgaaacgcc 297
           |||||||| ||||||||||| ||||| | ||| |  | ||| |||||||||||||||
Sbjct: 750 ttctcccagaactgagattggagccaatcaattagcttcttttccacctgaaacgcc 694
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>emb|Z69662.1|CEF56D5 Caenorhabditis elegans Cosmid F56D5, complete sequence
          Length = 38375

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 113   aggaaaatgaaaacacagctcacaa 137
             |||||||||||||| ||||||||||
Sbjct: 29460 aggaaaatgaaaactcagctcacaa 29436
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>gb|BC010109.2| Homo sapiens CD99 molecule, mRNA (cDNA clone MGC:19734
           IMAGE:3606974), complete cds
          Length = 1255

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 277 tccttctccacctgaaacgcc 297
           |||||||||||||||||||||
Sbjct: 486 tccttctccacctgaaacgcc 466
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>gb|BC002584.2| Homo sapiens CD99 molecule, mRNA (cDNA clone MGC:2282
           IMAGE:3161673), complete cds
          Length = 1185

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 277 tccttctccacctgaaacgcc 297
           |||||||||||||||||||||
Sbjct: 418 tccttctccacctgaaacgcc 398
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>gb|BC003147.1| Homo sapiens CD99 molecule, mRNA (cDNA clone MGC:3938
           IMAGE:2906143), complete cds
          Length = 1149

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 277 tccttctccacctgaaacgcc 297
           |||||||||||||||||||||
Sbjct: 376 tccttctccacctgaaacgcc 356
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>gb|BC024310.1| Homo sapiens CD99 molecule, mRNA (cDNA clone MGC:14521
           IMAGE:4094268), complete cds
          Length = 1258

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 277 tccttctccacctgaaacgcc 297
           |||||||||||||||||||||
Sbjct: 479 tccttctccacctgaaacgcc 459
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>gb|BC021620.1| Homo sapiens CD99 molecule, mRNA (cDNA clone MGC:4214
           IMAGE:2957883), complete cds
          Length = 1149

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 277 tccttctccacctgaaacgcc 297
           |||||||||||||||||||||
Sbjct: 376 tccttctccacctgaaacgcc 356
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>ref|NM_002414.3| Homo sapiens CD99 molecule (CD99), mRNA
          Length = 1255

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 277 tccttctccacctgaaacgcc 297
           |||||||||||||||||||||
Sbjct: 486 tccttctccacctgaaacgcc 466
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>emb|CR620339.1| full-length cDNA clone CS0DI082YB19 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1040

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 277 tccttctccacctgaaacgcc 297
           |||||||||||||||||||||
Sbjct: 289 tccttctccacctgaaacgcc 269
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>emb|CR617471.1| full-length cDNA clone CS0DI036YH18 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1051

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 277 tccttctccacctgaaacgcc 297
           |||||||||||||||||||||
Sbjct: 331 tccttctccacctgaaacgcc 311
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>emb|CR615331.1| full-length cDNA clone CS0DE013YA05 of Placenta of Homo sapiens
           (human)
          Length = 1039

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 277 tccttctccacctgaaacgcc 297
           |||||||||||||||||||||
Sbjct: 375 tccttctccacctgaaacgcc 355
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>emb|CR613828.1| full-length cDNA clone CS0DL011YA16 of B cells (Ramos cell line)
           Cot 25-normalized of Homo sapiens (human)
          Length = 1073

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 277 tccttctccacctgaaacgcc 297
           |||||||||||||||||||||
Sbjct: 434 tccttctccacctgaaacgcc 414
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>emb|CR613826.1| full-length cDNA clone CS0DL011YA18 of B cells (Ramos cell line)
           Cot 25-normalized of Homo sapiens (human)
          Length = 1093

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 277 tccttctccacctgaaacgcc 297
           |||||||||||||||||||||
Sbjct: 434 tccttctccacctgaaacgcc 414
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>emb|CR613006.1| full-length cDNA clone CS0DI056YM24 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1107

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 277 tccttctccacctgaaacgcc 297
           |||||||||||||||||||||
Sbjct: 375 tccttctccacctgaaacgcc 355
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>emb|CR612683.1| full-length cDNA clone CS0DI044YA19 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1055

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 277 tccttctccacctgaaacgcc 297
           |||||||||||||||||||||
Sbjct: 333 tccttctccacctgaaacgcc 313
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>emb|CR611995.1| full-length cDNA clone CS0DJ006YG11 of T cells (Jurkat cell line)
           Cot 10-normalized of Homo sapiens (human)
          Length = 1089

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 277 tccttctccacctgaaacgcc 297
           |||||||||||||||||||||
Sbjct: 360 tccttctccacctgaaacgcc 340
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>emb|CR611199.1| full-length cDNA clone CS0DJ007YA14 of T cells (Jurkat cell line)
           Cot 10-normalized of Homo sapiens (human)
          Length = 842

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 277 tccttctccacctgaaacgcc 297
           |||||||||||||||||||||
Sbjct: 363 tccttctccacctgaaacgcc 343
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>emb|CR610873.1| full-length cDNA clone CS0DI041YC12 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1083

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 277 tccttctccacctgaaacgcc 297
           |||||||||||||||||||||
Sbjct: 344 tccttctccacctgaaacgcc 324
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>emb|CR606510.1| full-length cDNA clone CS0DL005YG07 of B cells (Ramos cell line)
           Cot 25-normalized of Homo sapiens (human)
          Length = 1173

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 277 tccttctccacctgaaacgcc 297
           |||||||||||||||||||||
Sbjct: 453 tccttctccacctgaaacgcc 433
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>emb|CR605688.1| full-length cDNA clone CS0DI009YO21 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1077

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 277 tccttctccacctgaaacgcc 297
           |||||||||||||||||||||
Sbjct: 437 tccttctccacctgaaacgcc 417
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>emb|CR599762.1| full-length cDNA clone CS0DI009YG12 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1092

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 277 tccttctccacctgaaacgcc 297
           |||||||||||||||||||||
Sbjct: 344 tccttctccacctgaaacgcc 324
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>emb|CR590061.1| full-length cDNA clone CS0DI062YA02 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1142

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 277 tccttctccacctgaaacgcc 297
           |||||||||||||||||||||
Sbjct: 417 tccttctccacctgaaacgcc 397
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>emb|CR450286.1| Homo sapiens full open reading frame cDNA clone RZPDo834A101D for
           gene CD99, CD99 antigen; complete cds; without stopcodon
          Length = 555

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 277 tccttctccacctgaaacgcc 297
           |||||||||||||||||||||
Sbjct: 312 tccttctccacctgaaacgcc 292
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 48/57 (84%)
 Strand = Plus / Plus

                                                                        
Query: 241     ttctcccaaaactgagattgaagccagtgaatcaaatccttctccacctgaaacgcc 297
               |||||||| ||||||||||| ||||| | ||| |  | ||| |||||||||||||||
Sbjct: 7988306 ttctcccagaactgagattggagccaatcaattagcttcttttccacctgaaacgcc 7988362



 Score = 40.1 bits (20), Expect = 3.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 229     tagtagttgttattctcccaaaactgag 256
               ||||||| ||| ||||||||||||||||
Sbjct: 5237108 tagtagtggttgttctcccaaaactgag 5237081
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>gb|AC097457.2| Homo sapiens BAC clone RP11-3J1 from 4, complete sequence
          Length = 120836

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 115   gaaaatgaaaacacagctcac 135
             |||||||||||||||||||||
Sbjct: 67019 gaaaatgaaaacacagctcac 67039
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>gb|AY766185.1| Uncultured murine large bowel bacterium BAC 31B, complete sequence
          Length = 42737

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 9     gcaaaggagcacctttgtatt 29
             |||||||||||||||||||||
Sbjct: 28250 gcaaaggagcacctttgtatt 28230
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>dbj|AP004559.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0461A06
          Length = 136384

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 48/57 (84%)
 Strand = Plus / Plus

                                                                      
Query: 241   ttctcccaaaactgagattgaagccagtgaatcaaatccttctccacctgaaacgcc 297
             |||||||| ||||||||||| ||||| | ||| |  | ||| |||||||||||||||
Sbjct: 60476 ttctcccagaactgagattggagccaatcaattagcttcttttccacctgaaacgcc 60532
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>dbj|AK059812.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-B04, full
           insert sequence
          Length = 995

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 48/57 (84%)
 Strand = Plus / Minus

                                                                    
Query: 241 ttctcccaaaactgagattgaagccagtgaatcaaatccttctccacctgaaacgcc 297
           |||||||| ||||||||||| ||||| | ||| |  | ||| |||||||||||||||
Sbjct: 750 ttctcccagaactgagattggagccaatcaattagcttcttttccacctgaaacgcc 694
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>emb|AL359398.2|CNS05TE1 Human chromosome 14 DNA sequence BAC R-369C8 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 176399

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 111   aaaggaaaatgaaaacacagc 131
             |||||||||||||||||||||
Sbjct: 65832 aaaggaaaatgaaaacacagc 65812
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>emb|AL139354.6|CNS01DXK Human chromosome 14 DNA sequence BAC R-945F5 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 201539

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 111    aaaggaaaatgaaaacacagc 131
              |||||||||||||||||||||
Sbjct: 194910 aaaggaaaatgaaaacacagc 194890
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>gb|U82164.1|HSU82164 Human transmembrane protein CD99 type II mRNA, complete cds
          Length = 573

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 277 tccttctccacctgaaacgcc 297
           |||||||||||||||||||||
Sbjct: 312 tccttctccacctgaaacgcc 292
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>emb|X16996.1|HSE2 Human mRNA for T-cell surface glycoprotein E2
          Length = 1110

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 277 tccttctccacctgaaacgcc 297
           |||||||||||||||||||||
Sbjct: 435 tccttctccacctgaaacgcc 415
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>gb|M16279.1|HUMMIC2A Human MIC2 mRNA, complete cds
          Length = 1238

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 277 tccttctccacctgaaacgcc 297
           |||||||||||||||||||||
Sbjct: 489 tccttctccacctgaaacgcc 469
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>gb|AC102324.9| Mus musculus chromosome 1, clone RP24-476A18, complete sequence
          Length = 129634

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 112    aaggaaaatgaaaacacagc 131
              ||||||||||||||||||||
Sbjct: 126608 aaggaaaatgaaaacacagc 126627
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>ref|XM_480457.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 982

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 229 tagtagttgttattctcccaaaactgag 256
           ||||||| ||| ||||||||||||||||
Sbjct: 778 tagtagtggttgttctcccaaaactgag 751
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>gb|AC161502.9| Mus musculus chromosome 1, clone RP23-33E21, complete sequence
          Length = 215417

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 112    aaggaaaatgaaaacacagc 131
              ||||||||||||||||||||
Sbjct: 203724 aaggaaaatgaaaacacagc 203705
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>gb|AC008255.9| Drosophila melanogaster clone BACR48D17, complete sequence
          Length = 183316

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 108    tcaaaaggaaaatgaaaaca 127
              ||||||||||||||||||||
Sbjct: 180598 tcaaaaggaaaatgaaaaca 180579
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>emb|CR936241.17| Zebrafish DNA sequence from clone DKEY-18J18 in linkage group 18,
             complete sequence
          Length = 100610

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   caaaaggaaaatgaaaacac 128
             ||||||||||||||||||||
Sbjct: 54629 caaaaggaaaatgaaaacac 54648
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>emb|AL359921.13| Human DNA sequence from clone RP11-385F5 on chromosome 1 Contains a novel
              gene, the LGALS8 gene for lectin, galactoside-binding,
              soluble, 8 (galectin 8), the gene for protein BAP28
              (FLJ10359), a novel gene, the 5' end of the ACTN2 gene for
              actinin, alpha 2 and three CpG islands, complete sequence
          Length = 213757

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 141    tgcatgcatacgtattatta 160
              ||||||||||||||||||||
Sbjct: 184057 tgcatgcatacgtattatta 184038
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>emb|AJ630365.1| Canis familiaris MHC class II region on chromosome CFA12, partial
              sequence, BAC clone 181g17, containing DLA-DMB, DLA-DMA and
              BRD2 genes, GL004-like protein pseudogene, DLA-DOA gene,
              RPL26 and RPL11 pseudogenes, DLA-DPB1 pseudogenes, DLA-DPA1
              pseudogene, UPF0224 family pseudogene and partial col11a2
              gene
          Length = 155570

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 110    aaaaggaaaatgaaaacaca 129
              ||||||||||||||||||||
Sbjct: 102770 aaaaggaaaatgaaaacaca 102751
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>gb|AC157542.11| Mus musculus chromosome 1, clone RP23-115I1, complete sequence
          Length = 211677

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 112    aaggaaaatgaaaacacagc 131
              ||||||||||||||||||||
Sbjct: 179036 aaggaaaatgaaaacacagc 179055
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>gb|AC110062.4| Homo sapiens chromosome 18, clone CTD-2125N24, complete sequence
          Length = 139550

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 106   cttcaaaaggaaaatgaaaa 125
             ||||||||||||||||||||
Sbjct: 91769 cttcaaaaggaaaatgaaaa 91750
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>gb|AC159652.6| Mus musculus 10 BAC RP24-123H21 (Roswell Park Cancer Institute
            (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 202827

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 110  aaaaggaaaatgaaaacaca 129
            ||||||||||||||||||||
Sbjct: 8085 aaaaggaaaatgaaaacaca 8066
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>gb|AC073897.6|AC073897 Homo sapiens chromosome 15 clone RP11-718O11 map 15q21.1, complete
              sequence
          Length = 180538

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 112    aaggaaaatgaaaacacagc 131
              ||||||||||||||||||||
Sbjct: 139538 aaggaaaatgaaaacacagc 139519
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>gb|AC018488.7|AC018488 Drosophila melanogaster, chromosome X, region 13A-13B, BAC clone
              BACR09F03, complete sequence
          Length = 165118

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 108    tcaaaaggaaaatgaaaaca 127
              ||||||||||||||||||||
Sbjct: 134388 tcaaaaggaaaatgaaaaca 134407
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>gb|AC006209.25| Homo sapiens X BAC GS1-546D14 (Genome Systems Human Bac Library)
             complete sequence
          Length = 141759

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 278   ccttctccacctgaaacgcc 297
             ||||||||||||||||||||
Sbjct: 82127 ccttctccacctgaaacgcc 82146
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>gb|AC153983.7| Mus musculus 6 BAC RP24-479J14 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 178303

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 115   gaaaatgaaaacacagctca 134
             ||||||||||||||||||||
Sbjct: 75214 gaaaatgaaaacacagctca 75233
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>gb|AC078793.13| Homo sapiens 3 BAC RP11-693A13 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 152829

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 110   aaaaggaaaatgaaaacaca 129
             ||||||||||||||||||||
Sbjct: 42867 aaaaggaaaatgaaaacaca 42886
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>dbj|AP005531.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:B1099H05
          Length = 186036

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 229    tagtagttgttattctcccaaaactgag 256
              ||||||| ||| ||||||||||||||||
Sbjct: 105464 tagtagtggttgttctcccaaaactgag 105437
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>dbj|AP005505.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0610E02
          Length = 135816

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 229   tagtagttgttattctcccaaaactgag 256
             ||||||| ||| ||||||||||||||||
Sbjct: 28696 tagtagtggttgttctcccaaaactgag 28669
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>dbj|AK061029.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-G10, full
           insert sequence
          Length = 982

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 229 tagtagttgttattctcccaaaactgag 256
           ||||||| ||| ||||||||||||||||
Sbjct: 778 tagtagtggttgttctcccaaaactgag 751
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>gb|AC153931.2| Mus musculus 10 BAC RP24-147A18 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 172260

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 110    aaaaggaaaatgaaaacaca 129
              ||||||||||||||||||||
Sbjct: 107121 aaaaggaaaatgaaaacaca 107102
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>gb|AE003498.5| Drosophila melanogaster chromosome X, section 50 of 74 of the complete
              sequence
          Length = 341520

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 108    tcaaaaggaaaatgaaaaca 127
              ||||||||||||||||||||
Sbjct: 135143 tcaaaaggaaaatgaaaaca 135162
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>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome
          Length = 4096345

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 22      tttgtattccattcattaaa 41
               ||||||||||||||||||||
Sbjct: 3081539 tttgtattccattcattaaa 3081520
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>gb|AF032976.1|AF032976 Oryza sativa germin-like protein 6 (GER6) mRNA, complete cds
          Length = 967

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 229 tagtagttgttattctcccaaaactgag 256
           ||||||| ||| ||||||||||||||||
Sbjct: 762 tagtagtggttgttctcccaaaactgag 735


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,019,974
Number of Sequences: 3902068
Number of extensions: 4019974
Number of successful extensions: 94041
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 93887
Number of HSP's gapped (non-prelim): 152
length of query: 301
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 279
effective length of database: 17,147,199,772
effective search space: 4784068736388
effective search space used: 4784068736388
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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