ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet123h06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY149607.1| Hordeum vulgare cultivar Orthega cinnamoyl CoA re... 317 8e-84
2gb|AC129572.6| Mus musculus chromosome 5, clone RP23-452L7, comp... 40 2.7
3gb|AC113018.7| Mus musculus chromosome 5, clone RP23-183C18, com... 40 2.7

>gb|AY149607.1| Hordeum vulgare cultivar Orthega cinnamoyl CoA reductase mRNA,
            complete cds
          Length = 1279

 Score =  317 bits (160), Expect = 8e-84
 Identities = 166/168 (98%)
 Strand = Plus / Minus

                                                                        
Query: 43   gcgttgaccatcgaagacgatacattactatgttggcttatagtccacttaaataacata 102
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1279 gcgttgaccatcgaagacgatacattactatgtttgcttatagtccacttaaataacata 1220

                                                                        
Query: 103  acacgatattagataggacgtatacacaaacataacagatcatgttacagaaaaaacgtg 162
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1219 acacgatattagataggacgtatacacaaacataacagatcatgttacagaaaaaacgtg 1160

                                                            
Query: 163  aactgtgctgtttcttcagcaccatcacgctgttgcaccgtccagctg 210
             |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1159 tactgtgctgtttcttcagcaccatcacgctgttgcaccgtccagctg 1112



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>gb|AC129572.6| Mus musculus chromosome 5, clone RP23-452L7, complete sequence
          Length = 178011

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 73    tgttggcttatagtccacttaaat 96
             ||||||||||| ||||||||||||
Sbjct: 26301 tgttggcttattgtccacttaaat 26324



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>gb|AC113018.7| Mus musculus chromosome 5, clone RP23-183C18, complete sequence
          Length = 215671

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 73   tgttggcttatagtccacttaaat 96
            ||||||||||| ||||||||||||
Sbjct: 3403 tgttggcttattgtccacttaaat 3380


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,986,948
Number of Sequences: 3902068
Number of extensions: 1986948
Number of successful extensions: 143812
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 143808
Number of HSP's gapped (non-prelim): 4
length of query: 212
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 190
effective length of database: 17,147,199,772
effective search space: 3257967956680
effective search space used: 3257967956680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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