>CAD_DROME (P09085) Homeotic protein caudal|
          Length = 427

 Score = 33.1 bits (74), Expect = 0.17
 Identities = 21/72 (29%), Positives = 25/72 (34%), Gaps = 11/72 (15%)
 Frame = +2

Query: 191 ENVPLHKNGLRQSHYAHHVHLPDVHAPGPQGLDGAAPRRHPLVEAQRQ-----------Q 337
           +NVP   + L Q H+ HH H     A       G AP    L E                
Sbjct: 96  QNVPTSAHQLMQQHHHHHAHASSSSASSGSSSSGGAPGAPQLNETNSSIGVGGAGGGGGV 155

Query: 338 QGVPDDAPGAAP 373
            G  D  PG+AP
Sbjct: 156 GGATDGGPGSAP 167

>KNOB_PLAFN (P06719) Knob-associated histidine-rich protein precursor (KAHRP)|
          Length = 657

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +2

Query: 212 NGLRQSHYAHHVHLPDVHAPGPQGLDGAAPRRHPLVEAQRQQQGVP 349
           +G  Q+H+ HH H   +H   PQG     P   P+V+ Q  ++  P
Sbjct: 106 HGQDQAHHHHHHHHHHLHPQQPQGTVANPPSNEPVVKTQVFREARP 151

>SURF1_MOUSE (P09925) Surfeit locus protein 1|
          Length = 306

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = -1

Query: 334 LTLSLDERMAPRCRAVEALRSRGVDIGKVNMVGIVRLPE 218
           +T+ ++    PR +     R +G  +G+V++VGIVRL E
Sbjct: 179 VTILVNRGFVPRKKVNPETRQKGQVLGEVDLVGIVRLTE 217

>MRS1_SACDO (P41905) Mitochondrial RNA-splicing protein MRS1|
          Length = 363

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 310 MAPRCRAVEALRSRGVDIGKVNMVGI 233
           +  RC   E LR+R VD GKVN+ G+
Sbjct: 51  LVSRCAVFEQLRNRLVDEGKVNLFGV 76

>SF3A2_HUMAN (Q15428) Splicing factor 3A subunit 2 (Spliceosome-associated|
           protein 62) (SAP 62) (SF3a66)
          Length = 464

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 18/45 (40%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = +2

Query: 242 HVHLPDVHAPGPQGLDGAAPRRHPLVEA-QRQQQGVPDDAPGAAP 373
           H   P VH P   G+   AP  HP   A   Q  GV   APG  P
Sbjct: 358 HPPAPGVHPPPSAGVHPQAPGVHPAAPAVHPQAPGVHPPAPGMHP 402

>SURF1_RAT (Q9QXU2) Surfeit locus protein 1|
          Length = 306

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = -1

Query: 334 LTLSLDERMAPRCRAVEALRSRGVDIGKVNMVGIVRLPE 218
           +T+ ++    PR +     R +G  +G+V++VGIVRL E
Sbjct: 179 VTILVNRGFVPRKKVNPETRQQGQVLGEVDLVGIVRLTE 217

>TRPE_PSEPU (P20579) Anthranilate synthase component 1 (EC 4.1.3.27)|
           (Anthranilate synthase component I)
          Length = 493

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = -1

Query: 328 LSLDERMAPRCRAVEALRSRGVDIGKVNMVGIVRLPEAIFVERY 197
           LS D+ +A     ++  R+   D+G+V+  G VRL E + +ERY
Sbjct: 327 LSDDKEIAEHLMLIDLGRN---DVGRVSSTGSVRLTEKMVIERY 367

>FOXK2_HUMAN (Q01167) Forkhead box protein K2 (Interleukin enhancer-binding|
           factor 1) (Cellular transcription factor ILF-1)
          Length = 655

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
 Frame = +2

Query: 224 QSHYAHHVHLP----DVHAPGPQGLDGAAPRRHP 313
           + H    +HLP    D+HAPG +G  GAAP   P
Sbjct: 62  REHGPLELHLPAPPRDLHAPGRRGHGGAAPELPP 95

>TRPE_SULSO (Q06128) Anthranilate synthase component 1 (EC 4.1.3.27)|
           (Anthranilate synthase component I)
          Length = 421

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 11/22 (50%), Positives = 18/22 (81%)
 Frame = -1

Query: 262 DIGKVNMVGIVRLPEAIFVERY 197
           D+GKV + G V++PE ++VE+Y
Sbjct: 280 DLGKVCVPGTVKVPELMYVEKY 301

>SF3A2_MOUSE (Q62203) Splicing factor 3A subunit 2 (Spliceosome-associated|
           protein 62) (SAP 62) (SF3a66)
          Length = 475

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 17/44 (38%), Positives = 18/44 (40%)
 Frame = +2

Query: 242 HVHLPDVHAPGPQGLDGAAPRRHPLVEAQRQQQGVPDDAPGAAP 373
           H   P VH   P G+  AAP  HP      Q  GV    PG  P
Sbjct: 412 HPQAPGVHPQPPPGVHPAAPGVHP------QPPGVHPSNPGVHP 449



 Score = 28.9 bits (63), Expect = 3.2
 Identities = 18/45 (40%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = +2

Query: 242 HVHLPDVHAPGPQGLDGAAPRRHPLVEA-QRQQQGVPDDAPGAAP 373
           H   P VH P   G+   AP  HP   A   Q  GV   APG  P
Sbjct: 369 HPPAPGVHPPPSAGVHPQAPGVHPPAPAVHPQAPGVHPPAPGIHP 413



 Score = 27.3 bits (59), Expect = 9.2
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +2

Query: 242 HVHLPDVHAPGPQGLDGAAPRRHPLVEAQRQQQGVPDDAPGAAP 373
           H   P VH P P G+  + P  HP       +  +P D PG  P
Sbjct: 427 HPAAPGVH-PQPPGVHPSNPGVHPAPMPPMLRPPLPSDGPGNMP 469

>FOXL2_HUMAN (P58012) Forkhead box protein L2|
          Length = 376

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 16/47 (34%), Positives = 19/47 (40%)
 Frame = +2

Query: 233 YAHHVHLPDVHAPGPQGLDGAAPRRHPLVEAQRQQQGVPDDAPGAAP 373
           +AHH+H      P P     AAP    L  A       P  AP +AP
Sbjct: 295 HAHHLHAAAAPPPAPPHHGAAAPPPGQLSPASPATAAPPAPAPTSAP 341

>FOXL2_MOUSE (O88470) Forkhead box protein L2 (Pituitary forkhead factor)|
           (P-Frk)
          Length = 375

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 16/47 (34%), Positives = 19/47 (40%)
 Frame = +2

Query: 233 YAHHVHLPDVHAPGPQGLDGAAPRRHPLVEAQRQQQGVPDDAPGAAP 373
           +AHH+H      P P     AAP    L  A       P  AP +AP
Sbjct: 294 HAHHLHAAAAPPPAPPHHGAAAPPPGQLSPASPATAAPPAPAPTSAP 340

>BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1 protein)|
          Length = 1362

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +2

Query: 221 RQSHYAHHVHLPDVHAPGPQGLDGAAPRRHPLVEAQRQQQGVPDDAPGAAP 373
           ++ H+ HH  +    AP PQ       +  P    Q+QQQ  P   P + P
Sbjct: 736 KKHHHHHHQQMQQAPAPVPQQPPPPPQQPPPPPPPQQQQQPPPPPPPPSMP 786

>LHX1_RAT (P63007) LIM/homeobox protein Lhx1 (LIM homeobox protein 1)|
           (Homeobox protein Lim-1) (Rlim)
          Length = 406

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
 Frame = +2

Query: 245 VHLPDVHAPGPQG-----LDGAAPRRHPLVEAQRQQQGV---PDDAPGAAP 373
           V LP V + GP G     LD   P  HP  EAQR    +   P D+P   P
Sbjct: 309 VDLPFVPSSGPSGTPLGGLDHPLPGHHPSSEAQRFTDILAHPPGDSPSPEP 359

>LHX1_MOUSE (P63006) LIM/homeobox protein Lhx1 (LIM homeobox protein 1)|
           (Homeobox protein Lim-1)
          Length = 406

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
 Frame = +2

Query: 245 VHLPDVHAPGPQG-----LDGAAPRRHPLVEAQRQQQGV---PDDAPGAAP 373
           V LP V + GP G     LD   P  HP  EAQR    +   P D+P   P
Sbjct: 309 VDLPFVPSSGPSGTPLGGLDHPLPGHHPSSEAQRFTDILAHPPGDSPSPEP 359

>LHX1_MESAU (P63008) LIM/homeobox protein Lhx1 (LIM homeobox protein 1)|
           (Homeobox protein Lim-1) (Homeobox protein LMX-2)
          Length = 406

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
 Frame = +2

Query: 245 VHLPDVHAPGPQG-----LDGAAPRRHPLVEAQRQQQGV---PDDAPGAAP 373
           V LP V + GP G     LD   P  HP  EAQR    +   P D+P   P
Sbjct: 309 VDLPFVPSSGPSGTPLGGLDHPLPGHHPSSEAQRFTDILAHPPGDSPSPEP 359

>MAFB_RAT (P54842) Transcription factor MafB (V-maf musculoaponeurotic|
           fibrosarcoma oncogene homolog B) (Transcription factor
           MAF1)
          Length = 323

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 17/56 (30%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
 Frame = +2

Query: 212 NGLRQSHYAHHVHLPDVHAPGPQG---LDGAAPRRHPLVEAQRQQQGVPDDAPGAA 370
           +G R +H+ HH H P  H   P      D   P  HP      Q    P  A   A
Sbjct: 125 DGFRSAHHHHHHHHPHPHHGYPGAGVTHDELGPHAHPHHHHHHQASPPPSSAASPA 180

>TRPE_PSESS (P21689) Anthranilate synthase component 1 (EC 4.1.3.27)|
           (Anthranilate synthase component I)
          Length = 505

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -1

Query: 262 DIGKVNMVGIVRLPEAIFVERY 197
           D+G+V+ +G V+L E + +ERY
Sbjct: 346 DVGRVSEIGTVKLTEKMVIERY 367

>ALX3_MOUSE (O70137) Homeobox protein aristaless-like 3 (Proline-rich|
           transcription factor ALX3)
          Length = 343

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +2

Query: 266 APGPQGLDGAAPRRHP 313
           APGPQG   AAP  HP
Sbjct: 25  APGPQGTPDAAPHLHP 40

>BSN_MOUSE (O88737) Bassoon protein|
          Length = 3941

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 257 DVHAPGPQGLDGAAPRRHPLVEAQRQQQGVPDDAPGAAPD 376
           +  A GP G +  +PRR   V+++ Q+ G    +P  +PD
Sbjct: 107 ETRAQGPSGQEAESPRRTLQVDSRTQRSG---RSPSVSPD 143

>KPC1_TRIRE (Q99014) Protein kinase C-like (EC 2.7.11.13)|
          Length = 1139

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 7/57 (12%)
 Frame = +2

Query: 224 QSHYA-------HHVHLPDVHAPGPQGLDGAAPRRHPLVEAQRQQQGVPDDAPGAAP 373
           Q HY        HH + P  +A   QG     P +    + Q+QQQ  P   P   P
Sbjct: 694 QGHYGAAGPAPQHHKYNPADYANVDQGFPAQPPAQQRPPQPQQQQQAPPAQMPPQQP 750

>FOXGB_MOUSE (Q60987) Forkhead box protein G1B (Forkhead-related protein FKHL1)|
           (Transcription factor BF-1) (Brain factor 1) (BF1)
          Length = 481

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 19/55 (34%), Positives = 22/55 (40%)
 Frame = +2

Query: 206 HKNGLRQSHYAHHVHLPDVHAPGPQGLDGAAPRRHPLVEAQRQQQGVPDDAPGAA 370
           H N     H+ HH H    H P P      AP+  P    Q+QQQ  P   P  A
Sbjct: 39  HHNSHHPQHHHHHHH--HHHPPPP------APQPPPPPPQQQQQQPPPAPQPPQA 85


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,914,009
Number of Sequences: 219361
Number of extensions: 1163480
Number of successful extensions: 3707
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 3515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3703
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 1407308304
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)