ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet123c07 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X55892.1|ZMLHCABB Zea mays L. mRNA for light-harvesting chlorophyll a/b binding protein Length = 869 Score = 95.6 bits (48), Expect = 4e-17 Identities = 60/64 (93%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcga 177 ||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||| Sbjct: 808 acttgccgggcacaaagttggtggcataggcccatgcgttgttgttgacggggtcggcga 749 Query: 178 ggtg 181 |||| Sbjct: 748 ggtg 745
>gb|BC053854.1| Homo sapiens cDNA clone IMAGE:5194336, partial cds Length = 1044 Score = 83.8 bits (42), Expect = 2e-13 Identities = 60/66 (90%) Strand = Plus / Minus Query: 116 ttacttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggc 175 ||||||||||||||| ||||||| ||| |||||||| ||||||||||||||||||||| Sbjct: 864 ttacttgccgggcacgaagttggtggcgaaggcccaggcgttgttgttgacggggtcgga 805 Query: 176 gaggtg 181 |||||| Sbjct: 804 gaggtg 799
>gb|AY389597.1| Hyacinthus orientalis chloroplast chlorophyll a/b-binding protein mRNA, partial cds Length = 575 Score = 79.8 bits (40), Expect = 3e-12 Identities = 58/64 (90%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcga 177 |||||||||| |||||||||| |||||| ||||| | |||||||||||||||||||||| Sbjct: 470 acttgccggggacaaagttggtggcaaaagcccaggcattgttgttgacggggtcggcga 411 Query: 178 ggtg 181 |||| Sbjct: 410 ggtg 407
>gb|U74295.1|OSU74295 Oryza sativa chlorophyll a/b binding protein (kcdl895) mRNA, complete cds Length = 1022 Score = 79.8 bits (40), Expect = 3e-12 Identities = 58/64 (90%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcga 177 |||||||||| |||||||||| ||| ||||||| |||||||||||||||||||||||| Sbjct: 838 acttgccggggacaaagttggtggcgtaggcccatgcgttgttgttgacggggtcggcga 779 Query: 178 ggtg 181 |||| Sbjct: 778 ggtg 775
>gb|L23107.1|GBICABBP Ginkgo biloba nuclear-encoded chloroplast chlorophyll a/b binding protein mRNA, complete cds Length = 997 Score = 75.8 bits (38), Expect = 4e-11 Identities = 56/62 (90%) Strand = Plus / Minus Query: 120 ttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcgagg 179 |||||||| || ||||||| ||| |||||||| |||||||||||||||||||||||||| Sbjct: 867 ttgccggggacgaagttggtggcgaaggcccaggcgttgttgttgacggggtcggcgagg 808 Query: 180 tg 181 || Sbjct: 807 tg 806
>gb|M29334.1|LGILHCPABP L.gibba light-harvesting chlorophyll a/b protein gene, complete cds Length = 1633 Score = 73.8 bits (37), Expect = 2e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcga 177 |||||||||| || ||||||| ||| |||||||| |||||||||||||||||||||||| Sbjct: 1193 acttgccggggacgaagttggtggcgaaggcccaggcgttgttgttgacggggtcggcga 1134 Query: 178 g 178 | Sbjct: 1133 g 1133
>ref|NM_191799.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 798 Score = 71.9 bits (36), Expect = 6e-10 Identities = 57/64 (89%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcga 177 |||||||||| || ||||||| ||| ||||||| |||||||||||||||||||||||| Sbjct: 796 acttgccggggacgaagttggtggcgtaggcccatgcgttgttgttgacggggtcggcga 737 Query: 178 ggtg 181 |||| Sbjct: 736 ggtg 733
>ref|NM_192636.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 789 Score = 71.9 bits (36), Expect = 6e-10 Identities = 57/64 (89%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcga 177 |||||||||| || ||||||| ||| ||||||| |||||||||||||||||||||||| Sbjct: 784 acttgccggggacgaagttggtggcgtaggcccaggcgttgttgttgacggggtcggcga 725 Query: 178 ggtg 181 |||| Sbjct: 724 ggtg 721
>emb|X13908.1|OSCABR1 Rice cab1R gene for light harvesting chlorophyll a/b-binding protein Length = 1664 Score = 71.9 bits (36), Expect = 6e-10 Identities = 57/64 (89%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcga 177 |||||||||| || ||||||| ||| ||||||| |||||||||||||||||||||||| Sbjct: 1245 acttgccggggacgaagttggtggcgtaggcccaggcgttgttgttgacggggtcggcga 1186 Query: 178 ggtg 181 |||| Sbjct: 1185 ggtg 1182
>gb|AY100470.1| Oryza sativa (indica cultivar-group) putative soluble starch synthase IV-1 gene, complete cds Length = 15000 Score = 71.9 bits (36), Expect = 6e-10 Identities = 57/64 (89%) Strand = Plus / Plus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcga 177 |||||||||| || ||||||| ||| ||||||| |||||||||||||||||||||||| Sbjct: 13878 acttgccggggacgaagttggtggcgtaggcccatgcgttgttgttgacggggtcggcga 13937 Query: 178 ggtg 181 |||| Sbjct: 13938 ggtg 13941
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 71.9 bits (36), Expect = 6e-10 Identities = 57/64 (89%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcga 177 |||||||||| || ||||||| ||| ||||||| |||||||||||||||||||||||| Sbjct: 30025133 acttgccggggacgaagttggtggcgtaggcccatgcgttgttgttgacggggtcggcga 30025074 Query: 178 ggtg 181 |||| Sbjct: 30025073 ggtg 30025070 Score = 71.9 bits (36), Expect = 6e-10 Identities = 57/64 (89%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcga 177 |||||||||| || ||||||| ||| ||||||| |||||||||||||||||||||||| Sbjct: 23604327 acttgccggggacgaagttggtggcgtaggcccaggcgttgttgttgacggggtcggcga 23604268 Query: 178 ggtg 181 |||| Sbjct: 23604267 ggtg 23604264
>dbj|AP003292.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0690B02 Length = 153116 Score = 71.9 bits (36), Expect = 6e-10 Identities = 57/64 (89%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcga 177 |||||||||| || ||||||| ||| ||||||| |||||||||||||||||||||||| Sbjct: 21123 acttgccggggacgaagttggtggcgtaggcccatgcgttgttgttgacggggtcggcga 21064 Query: 178 ggtg 181 |||| Sbjct: 21063 ggtg 21060
>dbj|AP003278.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0518F01 Length = 154541 Score = 71.9 bits (36), Expect = 6e-10 Identities = 57/64 (89%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcga 177 |||||||||| || ||||||| ||| ||||||| |||||||||||||||||||||||| Sbjct: 67026 acttgccggggacgaagttggtggcgtaggcccaggcgttgttgttgacggggtcggcga 66967 Query: 178 ggtg 181 |||| Sbjct: 66966 ggtg 66963
>dbj|AK121563.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034J10, full insert sequence Length = 1180 Score = 71.9 bits (36), Expect = 6e-10 Identities = 57/64 (89%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcga 177 |||||||||| || ||||||| ||| ||||||| |||||||||||||||||||||||| Sbjct: 855 acttgccggggacgaagttggtggcgtaggcccaggcgttgttgttgacggggtcggcga 796 Query: 178 ggtg 181 |||| Sbjct: 795 ggtg 792
>dbj|AK119173.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-B06, full insert sequence Length = 1126 Score = 71.9 bits (36), Expect = 6e-10 Identities = 57/64 (89%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcga 177 |||||||||| || ||||||| ||| ||||||| |||||||||||||||||||||||| Sbjct: 854 acttgccggggacgaagttggtggcgtaggcccaggcgttgttgttgacggggtcggcga 795 Query: 178 ggtg 181 |||| Sbjct: 794 ggtg 791
>emb|X13909.1|OSCABR2 Rice cab2R gene for light harvesting chlorophyll a/b-binding protein Length = 1442 Score = 71.9 bits (36), Expect = 6e-10 Identities = 57/64 (89%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcga 177 |||||||||| || ||||||| ||| ||||||| |||||||||||||||||||||||| Sbjct: 1284 acttgccggggacgaagttggtggcgtaggcccaggcgttgttgttgacggggtcggcga 1225 Query: 178 ggtg 181 |||| Sbjct: 1224 ggtg 1221
>dbj|AK104176.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-C12, full insert sequence Length = 1055 Score = 71.9 bits (36), Expect = 6e-10 Identities = 57/64 (89%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcga 177 |||||||||| || ||||||| ||| ||||||| |||||||||||||||||||||||| Sbjct: 877 acttgccggggacgaagttggtggcgtaggcccatgcgttgttgttgacggggtcggcga 818 Query: 178 ggtg 181 |||| Sbjct: 817 ggtg 814
>dbj|AK103946.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-B02, full insert sequence Length = 1055 Score = 71.9 bits (36), Expect = 6e-10 Identities = 57/64 (89%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcga 177 |||||||||| || ||||||| ||| ||||||| |||||||||||||||||||||||| Sbjct: 877 acttgccggggacgaagttggtggcgtaggcccatgcgttgttgttgacggggtcggcga 818 Query: 178 ggtg 181 |||| Sbjct: 817 ggtg 814
>dbj|AK062725.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-106-D08, full insert sequence Length = 1057 Score = 71.9 bits (36), Expect = 6e-10 Identities = 57/64 (89%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcga 177 |||||||||| || ||||||| ||| ||||||| |||||||||||||||||||||||| Sbjct: 879 acttgccggggacgaagttggtggcgtaggcccatgcgttgttgttgacggggtcggcga 820 Query: 178 ggtg 181 |||| Sbjct: 819 ggtg 816
>dbj|AK061619.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-E02, full insert sequence Length = 650 Score = 71.9 bits (36), Expect = 6e-10 Identities = 57/64 (89%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcga 177 |||||||||| || ||||||| ||| ||||||| |||||||||||||||||||||||| Sbjct: 384 acttgccggggacgaagttggtggcgtaggcccaggcgttgttgttgacggggtcggcga 325 Query: 178 ggtg 181 |||| Sbjct: 324 ggtg 321
>dbj|AK058312.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-H12, full insert sequence Length = 1040 Score = 71.9 bits (36), Expect = 6e-10 Identities = 57/64 (89%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcga 177 |||||||||| || ||||||| ||| ||||||| |||||||||||||||||||||||| Sbjct: 862 acttgccggggacgaagttggtggcgtaggcccatgcgttgttgttgacggggtcggcga 803 Query: 178 ggtg 181 |||| Sbjct: 802 ggtg 799
>dbj|AK058289.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-E06, full insert sequence Length = 1057 Score = 71.9 bits (36), Expect = 6e-10 Identities = 57/64 (89%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcga 177 |||||||||| || ||||||| ||| ||||||| |||||||||||||||||||||||| Sbjct: 879 acttgccggggacgaagttggtggcgtaggcccatgcgttgttgttgacggggtcggcga 820 Query: 178 ggtg 181 |||| Sbjct: 819 ggtg 816
>gb|U73218.1|TAU73218 Triticum aestivum chlorophyll a/b-binding protein WCAB precursor (Wcab) mRNA, complete cds Length = 918 Score = 67.9 bits (34), Expect = 1e-08 Identities = 55/62 (88%) Strand = Plus / Minus Query: 116 ttacttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggc 175 |||||||||||| |||||||||| ||| || ||||| | |||||||||||||||||||| Sbjct: 810 ttacttgccggggacaaagttggtggcgaatgcccatgcattgttgttgacggggtcggc 751 Query: 176 ga 177 || Sbjct: 750 ga 749
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 63.9 bits (32), Expect = 2e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcga 177 |||||||||| || ||||||| ||| | ||||| |||||||||||||||||||||||| Sbjct: 10793780 acttgccggggacgaagttggtggcgtacgcccaggcgttgttgttgacggggtcggcga 10793721 Query: 178 ggtg 181 |||| Sbjct: 10793720 ggtg 10793717 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 135 ttgggggcaaaggcccacc 153 ||||||||||||||||||| Sbjct: 11382380 ttgggggcaaaggcccacc 11382398
>dbj|AP005313.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0512H04 Length = 151049 Score = 63.9 bits (32), Expect = 2e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcga 177 |||||||||| || ||||||| ||| | ||||| |||||||||||||||||||||||| Sbjct: 17503 acttgccggggacgaagttggtggcgtacgcccaggcgttgttgttgacggggtcggcga 17444 Query: 178 ggtg 181 |||| Sbjct: 17443 ggtg 17440
>dbj|AP005700.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0085I16 Length = 141701 Score = 63.9 bits (32), Expect = 2e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcga 177 |||||||||| || ||||||| ||| | ||||| |||||||||||||||||||||||| Sbjct: 130398 acttgccggggacgaagttggtggcgtacgcccaggcgttgttgttgacggggtcggcga 130339 Query: 178 ggtg 181 |||| Sbjct: 130338 ggtg 130335
>emb|X12735.1|HVCAB2 Barley Cab-2 gene for major light-harvesting chlorophyll a/b- binding protein ( LHCP ) Length = 1030 Score = 63.9 bits (32), Expect = 2e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 115 tttacttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcgg 174 ||||||||||||| || ||||||| ||| |||||||| | |||||||| |||||||||| Sbjct: 976 tttacttgccggggacgaagttggtggcgaaggcccaggcattgttgtttacggggtcgg 917 Query: 175 cgag 178 |||| Sbjct: 916 cgag 913
>dbj|AK104350.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-G02, full insert sequence Length = 1013 Score = 63.9 bits (32), Expect = 2e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcga 177 |||||||||| || ||||||| ||| | ||||| |||||||||||||||||||||||| Sbjct: 848 acttgccggggacgaagttggtggcgtacgcccaggcgttgttgttgacggggtcggcga 789 Query: 178 ggtg 181 |||| Sbjct: 788 ggtg 785
>dbj|AK104288.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-E05, full insert sequence Length = 1021 Score = 63.9 bits (32), Expect = 2e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcga 177 |||||||||| || ||||||| ||| | ||||| |||||||||||||||||||||||| Sbjct: 853 acttgccggggacgaagttggtggcgtacgcccaggcgttgttgttgacggggtcggcga 794 Query: 178 ggtg 181 |||| Sbjct: 793 ggtg 790
>dbj|AK104281.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-006-D01, full insert sequence Length = 1056 Score = 63.9 bits (32), Expect = 2e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcga 177 |||||||||| || ||||||| ||| | ||||| |||||||||||||||||||||||| Sbjct: 855 acttgccggggacgaagttggtggcgtacgcccaggcgttgttgttgacggggtcggcga 796 Query: 178 ggtg 181 |||| Sbjct: 795 ggtg 792
>dbj|AK060851.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E08, full insert sequence Length = 1235 Score = 63.9 bits (32), Expect = 2e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcga 177 |||||||||| || ||||||| ||| | ||||| |||||||||||||||||||||||| Sbjct: 853 acttgccggggacgaagttggtggcgtacgcccaggcgttgttgttgacggggtcggcga 794 Query: 178 ggtg 181 |||| Sbjct: 793 ggtg 790
>dbj|AK058305.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-H02, full insert sequence Length = 1045 Score = 63.9 bits (32), Expect = 2e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcga 177 |||||||||| || ||||||| ||| | ||||| |||||||||||||||||||||||| Sbjct: 853 acttgccggggacgaagttggtggcgtacgcccaggcgttgttgttgacggggtcggcga 794 Query: 178 ggtg 181 |||| Sbjct: 793 ggtg 790
>dbj|D00641.1|RICLHCP1 Oryza sativa (japonica cultivar-group) mRNA for type I light-harvesting chlorophyll a/b binding protein of photosystem II (LHCPII), complete cds Length = 1022 Score = 63.9 bits (32), Expect = 2e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcga 177 |||||||||| || ||||||| ||| | ||||| |||||||||||||||||||||||| Sbjct: 834 acttgccggggacgaagttggtggcgtacgcccaggcgttgttgttgacggggtcggcga 775 Query: 178 ggtg 181 |||| Sbjct: 774 ggtg 771
>gb|AC139600.16| Medicago truncatula clone mth2-20m4, complete sequence Length = 124732 Score = 61.9 bits (31), Expect = 6e-07 Identities = 49/55 (89%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtc 172 |||| ||||| |||||||| | |||||||||||| ||||||||||||||||||| Sbjct: 215 actttccggggacaaagtttgtggcaaaggcccaagcgttgttgttgacggggtc 161 Score = 42.1 bits (21), Expect = 0.57 Identities = 42/49 (85%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgac 166 |||| ||||| |||||||| | |||||||||||| ||||| ||||||| Sbjct: 2071 actttccgggaacaaagtttgtggcaaaggcccaagcgttgctgttgac 2023
>ref|NM_102732.2| Arabidopsis thaliana CAB2; chlorophyll binding AT1G29920 (CAB2) mRNA, complete cds Length = 1176 Score = 60.0 bits (30), Expect = 2e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggc 175 |||| ||||| |||||||||| |||||||||||| ||||||||||||| || ||||| Sbjct: 869 actttccgggaacaaagttggtggcaaaggcccaagcgttgttgttgactggatcggc 812
>gb|BT015572.1| Arabidopsis thaliana At1g29910 mRNA sequence Length = 762 Score = 60.0 bits (30), Expect = 2e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggc 175 |||| ||||| |||||||||| |||||||||||| ||||||||||||| || ||||| Sbjct: 760 actttccgggaacaaagttggtggcaaaggcccaagcgttgttgttgactggatcggc 703
>emb|X53398.1|ZMCABM7 Z.mays cab-m7 gene for light harvesting chlorophyll a/b binding protein Length = 2261 Score = 60.0 bits (30), Expect = 2e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggc 175 |||||||||| || ||||||| ||| ||||||| |||||||||||||||||||||| Sbjct: 1808 acttgccggggacgaagttggtggcgtaggcccaagcgttgttgttgacggggtcggc 1751
>gb|BT000726.1| Arabidopsis thaliana clone RAFL06-67-G16 (R11472) putative photosystem II type I chlorophyll a /b binding protein (At1g29920) mRNA, complete cds Length = 1044 Score = 60.0 bits (30), Expect = 2e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggc 175 |||| ||||| |||||||||| |||||||||||| ||||||||||||| || ||||| Sbjct: 855 actttccgggaacaaagttggtggcaaaggcccaagcgttgttgttgactggatcggc 798
>gb|AY128345.1| Arabidopsis thaliana photosystem II type I chlorophyll a/b binding protein, putative (At1g29920) mRNA, complete cds Length = 994 Score = 60.0 bits (30), Expect = 2e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggc 175 |||| ||||| |||||||||| |||||||||||| ||||||||||||| || ||||| Sbjct: 855 actttccgggaacaaagttggtggcaaaggcccaagcgttgttgttgactggatcggc 798
>gb|AY081572.1| Arabidopsis thaliana chlorophyll a/b-binding protein (At1g29920) mRNA, complete cds Length = 898 Score = 60.0 bits (30), Expect = 2e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggc 175 |||| ||||| |||||||||| |||||||||||| ||||||||||||| || ||||| Sbjct: 802 actttccgggaacaaagttggtggcaaaggcccaagcgttgttgttgactggatcggc 745
>gb|AY062814.1| Arabidopsis thaliana chlorophyll a/b-binding protein (At1g29920; F1N18.4) mRNA, complete cds Length = 1007 Score = 60.0 bits (30), Expect = 2e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggc 175 |||| ||||| |||||||||| |||||||||||| ||||||||||||| || ||||| Sbjct: 854 actttccgggaacaaagttggtggcaaaggcccaagcgttgttgttgactggatcggc 797
>gb|AY060500.1| Arabidopsis thaliana At1g29920/F1N18_80 mRNA, complete cds Length = 804 Score = 60.0 bits (30), Expect = 2e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggc 175 |||| ||||| |||||||||| |||||||||||| ||||||||||||| || ||||| Sbjct: 802 actttccgggaacaaagttggtggcaaaggcccaagcgttgttgttgactggatcggc 745
>gb|AY054198.1| Arabidopsis thaliana At1g29920/F1N18_80 mRNA, complete cds Length = 1027 Score = 60.0 bits (30), Expect = 2e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggc 175 |||| ||||| |||||||||| |||||||||||| ||||||||||||| || ||||| Sbjct: 848 actttccgggaacaaagttggtggcaaaggcccaagcgttgttgttgactggatcggc 791
>gb|AY052237.1| Arabidopsis thaliana At1g29920/F1N18_80 mRNA, complete cds Length = 1027 Score = 60.0 bits (30), Expect = 2e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggc 175 |||| ||||| |||||||||| |||||||||||| ||||||||||||| || ||||| Sbjct: 854 actttccgggaacaaagttggtggcaaaggcccaagcgttgttgttgactggatcggc 797
>dbj|AB211497.1| Lemna paucicostata LpCAB1 mRNA for CAB homologue1, partial cds Length = 695 Score = 60.0 bits (30), Expect = 2e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 132 aagttgggggcaaaggcccacccgttgttgttgacggggtcggcgaggtg 181 ||||||| ||| |||||||| ||||||||||||||||||| |||||||| Sbjct: 693 aagttggtggcgaaggcccaggcgttgttgttgacggggtcagcgaggtg 644
>gb|AC008030.4|AC008030 Arabidopsis thaliana chromosome I BAC F1N18 genomic sequence, complete sequence Length = 101075 Score = 60.0 bits (30), Expect = 2e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggc 175 |||| ||||| |||||||||| |||||||||||| ||||||||||||| || ||||| Sbjct: 19894 actttccgggaacaaagttggtggcaaaggcccaagcgttgttgttgactggatcggc 19837 Score = 44.1 bits (22), Expect = 0.14 Identities = 49/58 (84%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggc 175 |||| ||||| |||||||||| || |||||||| ||||||||||||| || ||||| Sbjct: 22540 actttccgggaacaaagttggttgcgaaggcccatgcgttgttgttgactggatcggc 22483
>gb|AY086905.1| Arabidopsis thaliana clone 29298 mRNA, complete sequence Length = 1041 Score = 60.0 bits (30), Expect = 2e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggc 175 |||| ||||| |||||||||| |||||||||||| ||||||||||||| || ||||| Sbjct: 869 actttccgggaacaaagttggtggcaaaggcccaagcgttgttgttgactggatcggc 812
>emb|Y00379.1|ZMLHCP Maize mRNA for light-harvesting chlorophyll a/b binding protein LHCP Length = 967 Score = 60.0 bits (30), Expect = 2e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggc 175 |||||||||| || ||||||| ||| ||||||| |||||||||||||||||||||| Sbjct: 860 acttgccggggacgaagttggtggcgtaggcccaagcgttgttgttgacggggtcggc 803
>emb|X03907.1|ATLHCP1 A.thaliana gene (LHCP AB 165) for chlorophyll a/b binding protein Length = 999 Score = 60.0 bits (30), Expect = 2e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggc 175 |||| ||||| |||||||||| |||||||||||| ||||||||||||| || ||||| Sbjct: 947 actttccgggaacaaagttggtggcaaaggcccaagcgttgttgttgactggatcggc 890
>emb|X89023.1|HVLHCIITI H.vulgare mRNA for LHC II type I protein Length = 934 Score = 60.0 bits (30), Expect = 2e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 120 ttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcga 177 |||||||| || ||||| | |||||| ||||| |||||||||||||||||||||||| Sbjct: 815 ttgccggggacgaagtttgtggcaaatgcccaagcgttgttgttgacggggtcggcga 758
>gb|AY109324.1| Zea mays CL187_1 mRNA sequence Length = 2262 Score = 60.0 bits (30), Expect = 2e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggc 175 |||||||||| || ||||||| ||| ||||||| |||||||||||||||||||||| Sbjct: 1808 acttgccggggacgaagttggtggcgtaggcccaagcgttgttgttgacggggtcggc 1751
>gb|AF072931.1|AF072931 Medicago sativa chlorophyll a/b binding protein (CARCAB1) mRNA, complete cds Length = 983 Score = 60.0 bits (30), Expect = 2e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggc 175 |||| ||||| |||||||||| |||| ||||||| ||||||||||||| |||||||| Sbjct: 850 actttccgggaacaaagttggtggcataggcccatgcgttgttgttgactgggtcggc 793
>emb|X63205.1|ZMCAB48 Zea mays cab48 gene for chlorophyll a/b binding protein precursor Length = 2780 Score = 56.0 bits (28), Expect = 4e-05 Identities = 55/64 (85%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcga 177 |||||||||| || ||||||| ||| | ||||| ||||||||||||||||||||| || Sbjct: 2719 acttgccggggacgaagttggtggcgtaagcccaggcgttgttgttgacggggtcggtga 2660 Query: 178 ggtg 181 |||| Sbjct: 2659 ggtg 2656
>emb|X02358.1|PECAB25 Petunia gene for chlorophyll a/b binding protein cab 25 Length = 1184 Score = 56.0 bits (28), Expect = 4e-05 Identities = 55/64 (85%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcga 177 |||| ||||| |||||||| | ||||||||||||| | |||||||| |||||||| || | Sbjct: 1029 actttccgggaacaaagtttgtggcaaaggcccacgcattgttgttaacggggtcagcaa 970 Query: 178 ggtg 181 |||| Sbjct: 969 ggtg 966
>gb|AY104614.1| Zea mays PCO084486 mRNA sequence Length = 1214 Score = 56.0 bits (28), Expect = 4e-05 Identities = 28/28 (100%) Strand = Plus / Minus Query: 154 cgttgttgttgacggggtcggcgaggtg 181 |||||||||||||||||||||||||||| Sbjct: 955 cgttgttgttgacggggtcggcgaggtg 928
>gb|K00976.1|PETCAB102 Petunia major chlorophyll a/b binding protein (Cab) clone pCab102, 3' end and flank Length = 302 Score = 56.0 bits (28), Expect = 4e-05 Identities = 55/64 (85%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcga 177 |||| ||||| |||||||| | ||||||||||||| | |||||||| |||||||| || | Sbjct: 187 actttccgggaacaaagtttgtggcaaaggcccacgcattgttgttaacggggtcagcaa 128 Query: 178 ggtg 181 |||| Sbjct: 127 ggtg 124
>gb|M12152.1|LGIAB19A Lemna gibba chlorophyll a/b apoprotein gene, complete cds Length = 1913 Score = 56.0 bits (28), Expect = 4e-05 Identities = 52/60 (86%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcga 177 |||||||||| || ||||||| ||| |||||||| |||||||| |||||||||||||| Sbjct: 1532 acttgccggggacgaagttggtggcgaaggcccaggcgttgttggcgacggggtcggcga 1473
>gb|AY430082.1| Trifolium pratense chlorophyll a/b binding protein mRNA, complete cds; nuclear gene for chloroplast product Length = 987 Score = 54.0 bits (27), Expect = 1e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtc 172 |||| ||||| |||||||||| |||||| ||||| ||||||||||||| ||||| Sbjct: 851 actttccgggaacaaagttggtggcaaaagcccaggcgttgttgttgactgggtc 797
>gb|AF279249.1|AF279249 Vigna radiata LHCII type I chlorophyll a/b-binding protein (CipLhcb1*2) mRNA, complete cds; nuclear gene for chloroplast product Length = 932 Score = 54.0 bits (27), Expect = 1e-04 Identities = 57/67 (85%) Strand = Plus / Minus Query: 115 tttacttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcgg 174 ||||||| || || |||||||||| ||| ||||||| ||||||||||||| ||||||| Sbjct: 852 tttactttccagggacaaagttggtggcgtaggcccaggcgttgttgttgacagggtcgg 793 Query: 175 cgaggtg 181 | ||||| Sbjct: 792 caaggtg 786
>gb|M15214.1|TOMCBPH Tomato chlorophyll a/b-binding protein gene Cab-3T, complete cds Length = 339 Score = 54.0 bits (27), Expect = 1e-04 Identities = 54/63 (85%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcga 177 |||| ||||| |||||||| | |||||||||||| |||||||||| || |||||||| | Sbjct: 337 actttccgggaacaaagtttgtggcaaaggcccagacgttgttgttaactgggtcggcaa 278 Query: 178 ggt 180 ||| Sbjct: 277 ggt 275
>ref|NM_001036402.1| Arabidopsis thaliana O-acetyltransferase AT2G34410 transcript variant AT2G34410.3 mRNA, complete cds Length = 3299 Score = 52.0 bits (26), Expect = 6e-04 Identities = 50/58 (86%) Strand = Plus / Plus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggc 175 |||| ||||| || ||||||| ||| |||||||| ||||||||||||| |||||||| Sbjct: 2487 actttccggggacgaagttggtggcgaaggcccaagcgttgttgttgactgggtcggc 2544
>ref|NM_001036401.1| Arabidopsis thaliana O-acetyltransferase AT2G34410 transcript variant AT2G34410.2 mRNA, complete cds Length = 3338 Score = 52.0 bits (26), Expect = 6e-04 Identities = 50/58 (86%) Strand = Plus / Plus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggc 175 |||| ||||| || ||||||| ||| |||||||| ||||||||||||| |||||||| Sbjct: 2487 actttccggggacgaagttggtggcgaaggcccaagcgttgttgttgactgggtcggc 2544
>ref|NM_128994.2| Arabidopsis thaliana LHB1B2; chlorophyll binding AT2G34420 (LHB1B2) transcript variant AT2G34420.1 mRNA, complete cds Length = 1354 Score = 52.0 bits (26), Expect = 6e-04 Identities = 50/58 (86%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggc 175 |||| ||||| || ||||||| ||| |||||||| ||||||||||||| |||||||| Sbjct: 851 actttccggggacgaagttggtggcgaaggcccaagcgttgttgttgactgggtcggc 794
>ref|NM_179900.1| Arabidopsis thaliana LHB1B2 AT2G34420 (LHB1B2) transcript variant AT2G34420.2 mRNA, complete cds Length = 1312 Score = 52.0 bits (26), Expect = 6e-04 Identities = 50/58 (86%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggc 175 |||| ||||| || ||||||| ||| |||||||| ||||||||||||| |||||||| Sbjct: 809 actttccggggacgaagttggtggcgaaggcccaagcgttgttgttgactgggtcggc 752
>gb|AY142513.1| Arabidopsis thaliana putative photosystem II type I chlorophyll a/b binding protein (At2g34420) mRNA, complete cds Length = 829 Score = 52.0 bits (26), Expect = 6e-04 Identities = 50/58 (86%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggc 175 |||| ||||| || ||||||| ||| |||||||| ||||||||||||| |||||||| Sbjct: 796 actttccggggacgaagttggtggcgaaggcccaagcgttgttgttgactgggtcggc 739
>gb|AY045806.1| Arabidopsis thaliana putative photosystem II type I chlorophyll a/b binding protein (At2g34420) mRNA, complete cds Length = 1015 Score = 52.0 bits (26), Expect = 6e-04 Identities = 50/58 (86%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggc 175 |||| ||||| || ||||||| ||| |||||||| ||||||||||||| |||||||| Sbjct: 851 actttccggggacgaagttggtggcgaaggcccaagcgttgttgttgactgggtcggc 794
>emb|AJ313013.1|PCO313013 Pinus contorta cab gene for chlorophyll a/b binding protein Length = 1197 Score = 52.0 bits (26), Expect = 6e-04 Identities = 53/62 (85%) Strand = Plus / Minus Query: 120 ttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcgagg 179 |||||||| || ||||||| |||| ||||||| |||||||| | ||||||||||| ||| Sbjct: 884 ttgccggggacgaagttggtggcataggcccaggcgttgttgctaacggggtcggccagg 825 Query: 180 tg 181 || Sbjct: 824 tg 823
>gb|AC004481.3| Arabidopsis thaliana chromosome 2 clone F13P17 map ve016, complete sequence Length = 112763 Score = 52.0 bits (26), Expect = 6e-04 Identities = 50/58 (86%) Strand = Plus / Plus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggc 175 |||| ||||| || ||||||| ||| |||||||| ||||||||||||| |||||||| Sbjct: 93205 actttccggggacgaagttggtggcgaaggcccaagcgttgttgttgactgggtcggc 93262
>gb|AC004077.3| Arabidopsis thaliana chromosome 2 clone T31E10 map ve016, complete sequence Length = 93060 Score = 52.0 bits (26), Expect = 6e-04 Identities = 50/58 (86%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggc 175 |||| ||||| || ||||||| ||| |||||||| ||||||||||||| |||||||| Sbjct: 80997 actttccggggacgaagttggtggcgaaggcccaagcgttgttgttgactgggtcggc 80940
>gb|AY081587.1| Arabidopsis thaliana photosystem II type I chlorophyll a/b binding protein (At2g34420) mRNA, complete cds Length = 883 Score = 52.0 bits (26), Expect = 6e-04 Identities = 50/58 (86%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggc 175 |||| ||||| || ||||||| ||| |||||||| ||||||||||||| |||||||| Sbjct: 796 actttccggggacgaagttggtggcgaaggcccaagcgttgttgttgactgggtcggc 739
>gb|AY079110.1| Arabidopsis thaliana At2g34420/T31E10.24 mRNA, complete cds Length = 798 Score = 52.0 bits (26), Expect = 6e-04 Identities = 50/58 (86%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggc 175 |||| ||||| || ||||||| ||| |||||||| ||||||||||||| |||||||| Sbjct: 796 actttccggggacgaagttggtggcgaaggcccaagcgttgttgttgactgggtcggc 739
>gb|AY079101.1| Arabidopsis thaliana At2g34420/T31E10.24 mRNA, complete cds Length = 798 Score = 52.0 bits (26), Expect = 6e-04 Identities = 50/58 (86%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggc 175 |||| ||||| || ||||||| ||| |||||||| ||||||||||||| |||||||| Sbjct: 796 actttccggggacgaagttggtggcgaaggcccaagcgttgttgttgactgggtcggc 739
>gb|AY065125.1| Arabidopsis thaliana photosystem II type I chlorophyll a/b binding protein (At2g34420; T31E10.24) mRNA, complete cds Length = 969 Score = 52.0 bits (26), Expect = 6e-04 Identities = 50/58 (86%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggc 175 |||| ||||| || ||||||| ||| |||||||| ||||||||||||| |||||||| Sbjct: 847 actttccggggacgaagttggtggcgaaggcccaagcgttgttgttgactgggtcggc 790
>gb|AF419587.1|AF419587 Arabidopsis thaliana At2g34420/T31E10.24 mRNA, complete cds Length = 969 Score = 52.0 bits (26), Expect = 6e-04 Identities = 50/58 (86%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggc 175 |||| ||||| || ||||||| ||| |||||||| ||||||||||||| |||||||| Sbjct: 847 actttccggggacgaagttggtggcgaaggcccaagcgttgttgttgactgggtcggc 790
>gb|AF419548.1|AF419548 Arabidopsis thaliana At2g34420/T31E10.24 mRNA, complete cds Length = 969 Score = 52.0 bits (26), Expect = 6e-04 Identities = 50/58 (86%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggc 175 |||| ||||| || ||||||| ||| |||||||| ||||||||||||| |||||||| Sbjct: 847 actttccggggacgaagttggtggcgaaggcccaagcgttgttgttgactgggtcggc 790
>gb|AF428397.1|AF428397 Arabidopsis thaliana At2g34420/T31E10.24 mRNA, complete cds Length = 1024 Score = 52.0 bits (26), Expect = 6e-04 Identities = 50/58 (86%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggc 175 |||| ||||| || ||||||| ||| |||||||| ||||||||||||| |||||||| Sbjct: 847 actttccggggacgaagttggtggcgaaggcccaagcgttgttgttgactgggtcggc 790
>gb|AY039561.1| Arabidopsis thaliana At2g34420/T31E10.24 mRNA, complete cds Length = 995 Score = 52.0 bits (26), Expect = 6e-04 Identities = 50/58 (86%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggc 175 |||| ||||| || ||||||| ||| |||||||| ||||||||||||| |||||||| Sbjct: 847 actttccggggacgaagttggtggcgaaggcccaagcgttgttgttgactgggtcggc 790
>gb|AF372886.1|AF372886 Arabidopsis thaliana At2g34420/T31E10.24 mRNA, complete cds Length = 969 Score = 52.0 bits (26), Expect = 6e-04 Identities = 50/58 (86%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggc 175 |||| ||||| || ||||||| ||| |||||||| ||||||||||||| |||||||| Sbjct: 847 actttccggggacgaagttggtggcgaaggcccaagcgttgttgttgactgggtcggc 790
>emb|BX819530.1|CNS0A9V8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB87ZE01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 291 Score = 52.0 bits (26), Expect = 6e-04 Identities = 50/58 (86%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggc 175 |||| ||||| || ||||||| ||| |||||||| ||||||||||||| |||||||| Sbjct: 167 actttccggggacgaagttggtggcgaaggcccaagcgttgttgttgactgggtcggc 110
>emb|BX820019.1|CNS0A9C1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS62ZC05 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 903 Score = 52.0 bits (26), Expect = 6e-04 Identities = 50/58 (86%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggc 175 |||| ||||| || ||||||| ||| |||||||| ||||||||||||| |||||||| Sbjct: 828 actttccggggacgaagttggtggcgaaggcccaagcgttgttgttgactgggtcggc 771
>emb|BX820007.1|CNS0A9CM Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS5ZF09 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 885 Score = 52.0 bits (26), Expect = 6e-04 Identities = 50/58 (86%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggc 175 |||| ||||| || ||||||| ||| |||||||| ||||||||||||| |||||||| Sbjct: 831 actttccggggacgaagttggtggcgaaggcccaagcgttgttgttgactgggtcggc 774
>emb|BX822910.1|CNS0A63G Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB71ZG07 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 919 Score = 52.0 bits (26), Expect = 6e-04 Identities = 50/58 (86%) Strand = Plus / Plus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggc 175 |||| ||||| || ||||||| ||| |||||||| ||||||||||||| |||||||| Sbjct: 88 actttccggggacgaagttggtggcgaaggcccaagcgttgttgttgactgggtcggc 145
>emb|X64460.1|ATLH1B2 A.thaliana Lhb1B2 gene for photosystem II chlorophyll a/b binding protein Length = 1405 Score = 52.0 bits (26), Expect = 6e-04 Identities = 50/58 (86%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggc 175 |||| ||||| || ||||||| ||| |||||||| ||||||||||||| |||||||| Sbjct: 1096 actttccggggacgaagttggtggcgaaggcccaagcgttgttgttgactgggtcggc 1039
>emb|X67714.1|PCCABA P.contorta cab gene for chlorophyll a/b binding protein Length = 2574 Score = 52.0 bits (26), Expect = 6e-04 Identities = 53/62 (85%) Strand = Plus / Minus Query: 120 ttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcgagg 179 |||||||| || ||||||| |||| ||||||| |||||||| | ||||||||||| ||| Sbjct: 1962 ttgccggggacgaagttggtggcataggcccaggcgttgttgctaacggggtcggccagg 1903 Query: 180 tg 181 || Sbjct: 1902 tg 1901
>emb|X81808.1|PALHCB1 P.abies (L.)Karst. Lhcb1*1 mRNA for light-harvesting chlorophyll a/b-binding protein Length = 1078 Score = 52.0 bits (26), Expect = 6e-04 Identities = 53/62 (85%) Strand = Plus / Minus Query: 120 ttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcgagg 179 ||||| || |||||||||| ||| ||||||| ||||||||||||| ||||| |||||| Sbjct: 834 ttgccagggacaaagttggtggcgtaggcccaggcgttgttgttgacagggtcagcgagg 775 Query: 180 tg 181 || Sbjct: 774 tg 773
>gb|U51633.1|PPU51633 Pinus palustris type 1 light-harvesting chlorophyll a/b-binding polypeptide (Lhcb1) mRNA, partial cds Length = 414 Score = 52.0 bits (26), Expect = 6e-04 Identities = 44/50 (88%) Strand = Plus / Minus Query: 132 aagttgggggcaaaggcccacccgttgttgttgacggggtcggcgaggtg 181 ||||||| |||| ||||||| |||||||||| ||||||||||| ||||| Sbjct: 273 aagttggtggcataggcccaggcgttgttgttaacggggtcggccaggtg 224
>gb|M30620.1|TOMCBPE2 Tomato chlorophyll a/b-binding protein Cab-3A gene, 3' end Length = 351 Score = 52.0 bits (26), Expect = 6e-04 Identities = 50/58 (86%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggc 175 |||| ||||| |||||||| | |||||||||||| |||||||||| || |||||||| Sbjct: 349 actttccgggaacaaagtttgtggcaaaggcccaggcgttgttgttaactgggtcggc 292
>gb|M10144.1|WHTCAB Wheat major chlorophyll a/b-binding protein gene, complete cds Length = 1191 Score = 50.1 bits (25), Expect = 0.002 Identities = 46/53 (86%) Strand = Plus / Minus Query: 123 ccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggc 175 |||||||| ||||||| ||||| | |||| ||||||||||||| |||||||| Sbjct: 994 ccgggcacgaagttggtggcaatgagccacgcgttgttgttgacagggtcggc 942
>gb|AF003127.1|AF003127 Mesembryanthemum crystallinum chlorophyll a/b-binding protein (CAB) mRNA, nuclear gene encoding chloroplast protein, complete cds Length = 1042 Score = 48.1 bits (24), Expect = 0.009 Identities = 54/64 (84%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcga 177 |||||||||| || ||||||| ||| |||||||| | ||||||||||| ||||| || | Sbjct: 826 acttgccgggaacgaagttggtggcgaaggcccaagcattgttgttgactgggtcagcaa 767 Query: 178 ggtg 181 |||| Sbjct: 766 ggtg 763
>gb|U43707.1|PAU43707 Picea abies chlorophyll a/b binding protein of PS II mRNA, partial cds Length = 551 Score = 48.1 bits (24), Expect = 0.009 Identities = 27/28 (96%) Strand = Plus / Minus Query: 154 cgttgttgttgacggggtcggcgaggtg 181 |||||||||||||||||||||| ||||| Sbjct: 358 cgttgttgttgacggggtcggccaggtg 331
>gb|DQ252493.1| Solanum tuberosum clone 062G02 chlorophyll a-b binding protein 3C-like mRNA, complete cds Length = 1055 Score = 48.1 bits (24), Expect = 0.009 Identities = 54/64 (84%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcga 177 |||| ||||| |||||||| | |||||||||||| |||||||||| || ||||| || | Sbjct: 837 actttccgggaacaaagtttgtggcaaaggcccaagcgttgttgttaactgggtcagcaa 778 Query: 178 ggtg 181 |||| Sbjct: 777 ggtg 774
>gb|L07119.1|COTIIABINA Gossypium hirsutum chloroplast photosystem II chlorophyll A/B-binding protein gene, complete cds Length = 1260 Score = 48.1 bits (24), Expect = 0.009 Identities = 54/64 (84%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcga 177 |||| ||||| |||||||||| |||| ||||||| | ||||||||||| ||||| || | Sbjct: 990 actttccggggacaaagttggtggcataggcccaagcattgttgttgactgggtcagcaa 931 Query: 178 ggtg 181 |||| Sbjct: 930 ggtg 927
>emb|AJ131044.1|CAR131044 Cicer arietinum mRNA for chlorophyll a/b binding protein Length = 983 Score = 46.1 bits (23), Expect = 0.036 Identities = 47/55 (85%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtc 172 |||| ||||| |||||||||| |||| ||||||| | ||||||||||| ||||| Sbjct: 813 actttccgggaacaaagttggtggcataggcccatgcattgttgttgacagggtc 759
>gb|M30622.1|TOMCBPF2 Tomato chlorophyll a/b-binding protein Cab-3B gene, 3' end Length = 351 Score = 46.1 bits (23), Expect = 0.036 Identities = 47/55 (85%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtc 172 |||| ||||| |||||||| | |||||||||||| |||||||||| || ||||| Sbjct: 349 actttccgggaacaaagtttgtggcaaaggcccaggcgttgttgttaactgggtc 295
>ref|NM_102731.2| Arabidopsis thaliana CAB3 (CHLOROPHYLL A/B BINDING PROTEIN 3); chlorophyll binding AT1G29910 (CAB3) mRNA, complete cds Length = 1020 Score = 44.1 bits (22), Expect = 0.14 Identities = 49/58 (84%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggc 175 |||| ||||| |||||||||| || |||||||| ||||||||||||| || ||||| Sbjct: 855 actttccgggaacaaagttggttgcgaaggcccatgcgttgttgttgactggatcggc 798
>gb|AY389549.1| Hyacinthus orientalis chloroplast chlorophyll A-B binding protein 3C (LHCP) mRNA, partial cds Length = 661 Score = 44.1 bits (22), Expect = 0.14 Identities = 43/50 (86%) Strand = Plus / Minus Query: 132 aagttgggggcaaaggcccacccgttgttgttgacggggtcggcgaggtg 181 ||||||| |||||| ||||| | |||||||||||||| ||||| ||||| Sbjct: 658 aagttggtggcaaacgcccaggcattgttgttgacgggatcggcaaggtg 609
>gb|AY114594.1| Arabidopsis thaliana chlorophyll a/b-binding protein (At1g29910) mRNA, complete cds Length = 870 Score = 44.1 bits (22), Expect = 0.14 Identities = 49/58 (84%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggc 175 |||| ||||| |||||||||| || |||||||| ||||||||||||| || ||||| Sbjct: 802 actttccgggaacaaagttggttgcgaaggcccatgcgttgttgttgactggatcggc 745
>gb|AY065165.1| Arabidopsis thaliana chlorophyll a/b-binding protein (At1g29910; F1N18.5) mRNA, complete cds Length = 1019 Score = 44.1 bits (22), Expect = 0.14 Identities = 49/58 (84%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggc 175 |||| ||||| |||||||||| || |||||||| ||||||||||||| || ||||| Sbjct: 855 actttccgggaacaaagttggttgcgaaggcccatgcgttgttgttgactggatcggc 798
>emb|BX815776.1|CNS0AE4K Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS93ZB12 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 972 Score = 44.1 bits (22), Expect = 0.14 Identities = 50/58 (86%), Gaps = 1/58 (1%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggc 175 |||| ||||| |||||||||| ||||| |||||| ||||||||||||| || ||||| Sbjct: 839 actttccgggaacaaagttggtggcaa-ggcccaagcgttgttgttgactggatcggc 783
>emb|X02357.1|PECAB13 Petunia gene for chlorophyll a/b binding protein cab 13 Length = 1019 Score = 44.1 bits (22), Expect = 0.14 Identities = 37/42 (88%) Strand = Plus / Minus Query: 140 ggcaaaggcccacccgttgttgttgacggggtcggcgaggtg 181 ||||||||||||| | |||||||| |||||||| || ||||| Sbjct: 898 ggcaaaggcccacgcattgttgttaacggggtcagcaaggtg 857
>emb|X03908.1|ATLHCP2 A.thaliana gene (LHCP AB 180) for chlorophyll a/b binding protein Length = 1060 Score = 44.1 bits (22), Expect = 0.14 Identities = 49/58 (84%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggc 175 |||| ||||| |||||||||| || |||||||| ||||||||||||| || ||||| Sbjct: 1008 actttccgggaacaaagttggttgcgaaggcccatgcgttgttgttgactggatcggc 951
>emb|X14794.1|ZMCAB1 Maize cab-1 gene for chlorophyll a/b-binding protein Length = 2100 Score = 44.1 bits (22), Expect = 0.14 Identities = 49/58 (84%) Strand = Plus / Minus Query: 120 ttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcga 177 |||||||| || ||||||| ||| ||||||| ||||||||||||| ||||| |||| Sbjct: 1676 ttgccggggacgaagttggtggcgtaggcccatgcgttgttgttgactgggtcagcga 1619
>gb|DQ226825.1| Boechera divaricarpa isolate SLW-B-H09 mRNA sequence Length = 775 Score = 42.1 bits (21), Expect = 0.57 Identities = 42/49 (85%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgac 166 |||| ||||| || ||||||| ||| |||||||| ||||||||||||| Sbjct: 630 actttccggggacgaagttggtggcgaaggcccatgcgttgttgttgac 582
>gb|AC124343.3| Mus musculus BAC clone RP24-445C12 from chromosome 3, complete sequence Length = 139786 Score = 42.1 bits (21), Expect = 0.57 Identities = 24/25 (96%) Strand = Plus / Minus Query: 85 acatactcatgaaaactcgattttc 109 |||||||||||||||||| |||||| Sbjct: 99430 acatactcatgaaaactcaattttc 99406
>emb|X16436.1|SACAB Mustard cab gene for chlorophyll a/b-binding protein Length = 2774 Score = 42.1 bits (21), Expect = 0.57 Identities = 42/49 (85%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgac 166 |||| ||||| || ||||||| ||| |||||||| ||||||||||||| Sbjct: 2374 actttccggggacgaagttggtggcgaaggcccatgcgttgttgttgac 2326
>gb|AF458406.1|AF458406 Brassica oleracea chlorophyll a/b binding protein (CAB1) mRNA, complete cds Length = 980 Score = 42.1 bits (21), Expect = 0.57 Identities = 42/49 (85%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgac 166 |||| ||||| || ||||||| |||||||||||| | ||||||||||| Sbjct: 841 actttccggggacgaagttggtggcaaaggcccatgcattgttgttgac 793
>emb|BX821638.1|CNS0A92F Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL5ZG08 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 911 Score = 42.1 bits (21), Expect = 0.57 Identities = 36/41 (87%) Strand = Plus / Minus Query: 135 ttgggggcaaaggcccacccgttgttgttgacggggtcggc 175 |||| ||| |||||||| ||||||||||||| |||||||| Sbjct: 814 ttggtggcgaaggcccaagcgttgttgttgactgggtcggc 774
>emb|X15894.1|SACAB1 Sinapsis alba cab-1 gene for chlorophyll a/b-binding polypeptide Length = 2775 Score = 42.1 bits (21), Expect = 0.57 Identities = 42/49 (85%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgac 166 |||| ||||| || ||||||| ||| |||||||| ||||||||||||| Sbjct: 2375 actttccggggacgaagttggtggcgaaggcccatgcgttgttgttgac 2327
>emb|X12981.1|GMCAB3 Soybean Cab3 gene for PSII LHCII chlorophyll a/b binding protein Length = 1361 Score = 42.1 bits (21), Expect = 0.57 Identities = 42/49 (85%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgac 166 |||| ||||| || ||||||| |||| ||||||| ||||||||||||| Sbjct: 1040 actttccggggacgaagttggtggcataggcccaggcgttgttgttgac 992
>ref|XM_478729.1| Oryza sativa (japonica cultivar-group), mRNA Length = 972 Score = 40.1 bits (20), Expect = 2.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 154 cgttgttgttgacggggtcggcgaggtg 181 |||||||| |||||||||||||||||| Sbjct: 797 cgttgttggcgacggggtcggcgaggtg 770
>ref|XM_507374.1| PREDICTED Oryza sativa (japonica cultivar-group), P0406F06.33 mRNA Length = 995 Score = 40.1 bits (20), Expect = 2.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 154 cgttgttgttgacggggtcggcgaggtg 181 |||||||| |||||||||||||||||| Sbjct: 821 cgttgttggcgacggggtcggcgaggtg 794
>ref|XM_507373.1| PREDICTED Oryza sativa (japonica cultivar-group), P0406F06.33 mRNA Length = 1007 Score = 40.1 bits (20), Expect = 2.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 154 cgttgttgttgacggggtcggcgaggtg 181 |||||||| |||||||||||||||||| Sbjct: 821 cgttgttggcgacggggtcggcgaggtg 794
>ref|XM_507372.1| PREDICTED Oryza sativa (japonica cultivar-group), P0406F06.33 mRNA Length = 1108 Score = 40.1 bits (20), Expect = 2.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 154 cgttgttgttgacggggtcggcgaggtg 181 |||||||| |||||||||||||||||| Sbjct: 823 cgttgttggcgacggggtcggcgaggtg 796
>ref|XM_507371.1| PREDICTED Oryza sativa (japonica cultivar-group), P0406F06.33 mRNA Length = 1000 Score = 40.1 bits (20), Expect = 2.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 154 cgttgttgttgacggggtcggcgaggtg 181 |||||||| |||||||||||||||||| Sbjct: 826 cgttgttggcgacggggtcggcgaggtg 799
>ref|XM_507370.1| PREDICTED Oryza sativa (japonica cultivar-group), P0406F06.33 mRNA Length = 1012 Score = 40.1 bits (20), Expect = 2.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 154 cgttgttgttgacggggtcggcgaggtg 181 |||||||| |||||||||||||||||| Sbjct: 826 cgttgttggcgacggggtcggcgaggtg 799
>ref|XM_507369.1| PREDICTED Oryza sativa (japonica cultivar-group), P0406F06.33 mRNA Length = 1032 Score = 40.1 bits (20), Expect = 2.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 154 cgttgttgttgacggggtcggcgaggtg 181 |||||||| |||||||||||||||||| Sbjct: 828 cgttgttggcgacggggtcggcgaggtg 801
>ref|XM_506410.2| PREDICTED Oryza sativa (japonica cultivar-group), P0406F06.33 mRNA Length = 1159 Score = 40.1 bits (20), Expect = 2.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 154 cgttgttgttgacggggtcggcgaggtg 181 |||||||| |||||||||||||||||| Sbjct: 861 cgttgttggcgacggggtcggcgaggtg 834
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 140 ggcaaaggcccacccgttgttgtt 163 |||||||||| ||||||||||||| Sbjct: 1153507 ggcaaaggccgacccgttgttgtt 1153484
>gb|AC135564.4| Oryza sativa chromosome 3 BAC OSJNBb0056O10 genomic sequence, complete sequence Length = 139771 Score = 40.1 bits (20), Expect = 2.3 Identities = 50/60 (83%) Strand = Plus / Plus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcga 177 |||||||||| || ||||||| ||| | ||||| |||||||| |||||||||||||| Sbjct: 78974 acttgccggggacgaagttggtggcgtatgcccaggcgttgttggcgacggggtcggcga 79033
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 2.3 Identities = 50/60 (83%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcga 177 |||||||||| || ||||||| ||| | ||||| |||||||| |||||||||||||| Sbjct: 21808842 acttgccggggacgaagttggtggcgtatgcccaggcgttgttggcgacggggtcggcga 21808783
>gb|AC092482.71| Mus musculus strain C57BL/6J clone rp23-60j11, complete sequence Length = 220334 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 67 catacatccagagtacacacatac 90 ||||||| |||||||||||||||| Sbjct: 92264 catacatacagagtacacacatac 92287
>emb|BX842575.1| Mycobacterium tuberculosis H37Rv complete genome; segment 4/13 Length = 349306 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 140 ggcaaaggcccacccgttgttgtt 163 |||||||||| ||||||||||||| Sbjct: 119676 ggcaaaggccgacccgttgttgtt 119653
>emb|BX248337.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 4/14 Length = 327650 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 140 ggcaaaggcccacccgttgttgtt 163 |||||||||| ||||||||||||| Sbjct: 166910 ggcaaaggccgacccgttgttgtt 166887
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 2.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 154 cgttgttgttgacggggtcggcgaggtg 181 |||||||| |||||||||||||||||| Sbjct: 22434834 cgttgttggcgacggggtcggcgaggtg 22434807
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 2.3 Identities = 50/60 (83%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcga 177 |||||||||| || ||||||| ||| | ||||| |||||||| |||||||||||||| Sbjct: 21801871 acttgccggggacgaagttggtggcgtatgcccaggcgttgttggcgacggggtcggcga 21801812
>emb|AL824704.27| Mouse DNA sequence from clone RP23-286H14 on chromosome 4, complete sequence Length = 205555 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 acacacatactcatgaaaac 100 |||||||||||||||||||| Sbjct: 73413 acacacatactcatgaaaac 73432
>gb|AF139467.2|AF139467 Vigna radiata LHCII type I chlorophyll a/b binding protein (CipLhcb1) mRNA, complete cds; nuclear gene for chloroplast product Length = 975 Score = 40.1 bits (20), Expect = 2.3 Identities = 53/64 (82%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcga 177 |||| ||||| || ||||||| ||| ||||||| ||||||||||||| ||||| || | Sbjct: 848 actttccggggacgaagttggtggcgtaggcccaggcgttgttgttgactgggtcagcaa 789 Query: 178 ggtg 181 |||| Sbjct: 788 ggtg 785
>dbj|AP004270.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0406F06 Length = 144533 Score = 40.1 bits (20), Expect = 2.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 154 cgttgttgttgacggggtcggcgaggtg 181 |||||||| |||||||||||||||||| Sbjct: 95901 cgttgttggcgacggggtcggcgaggtg 95874
>dbj|AK109399.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-C08, full insert sequence Length = 1111 Score = 40.1 bits (20), Expect = 2.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 154 cgttgttgttgacggggtcggcgaggtg 181 |||||||| |||||||||||||||||| Sbjct: 826 cgttgttggcgacggggtcggcgaggtg 799
>dbj|AK119545.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-G05, full insert sequence Length = 1012 Score = 40.1 bits (20), Expect = 2.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 154 cgttgttgttgacggggtcggcgaggtg 181 |||||||| |||||||||||||||||| Sbjct: 826 cgttgttggcgacggggtcggcgaggtg 799
>dbj|AK119533.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-F03, full insert sequence Length = 1000 Score = 40.1 bits (20), Expect = 2.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 154 cgttgttgttgacggggtcggcgaggtg 181 |||||||| |||||||||||||||||| Sbjct: 826 cgttgttggcgacggggtcggcgaggtg 799
>emb|Z75663.1|AGCHLABBP A.graveolens mRNA for chlorophyll a/b binding protein Length = 963 Score = 40.1 bits (20), Expect = 2.3 Identities = 53/64 (82%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcga 177 |||| ||||| |||||||| | |||||||||||| | |||||||| || ||||| || | Sbjct: 835 actttccgggaacaaagttagtggcaaaggcccaggcattgttgttaacagggtctgcaa 776 Query: 178 ggtg 181 |||| Sbjct: 775 ggtg 772
>dbj|AK104495.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-C03, full insert sequence Length = 973 Score = 40.1 bits (20), Expect = 2.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 154 cgttgttgttgacggggtcggcgaggtg 181 |||||||| |||||||||||||||||| Sbjct: 797 cgttgttggcgacggggtcggcgaggtg 770
>dbj|AK104465.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-C07, full insert sequence Length = 1012 Score = 40.1 bits (20), Expect = 2.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 154 cgttgttgttgacggggtcggcgaggtg 181 |||||||| |||||||||||||||||| Sbjct: 826 cgttgttggcgacggggtcggcgaggtg 799
>dbj|AK104224.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-E11, full insert sequence Length = 995 Score = 40.1 bits (20), Expect = 2.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 154 cgttgttgttgacggggtcggcgaggtg 181 |||||||| |||||||||||||||||| Sbjct: 821 cgttgttggcgacggggtcggcgaggtg 794
>dbj|AK103999.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-D10, full insert sequence Length = 1007 Score = 40.1 bits (20), Expect = 2.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 154 cgttgttgttgacggggtcggcgaggtg 181 |||||||| |||||||||||||||||| Sbjct: 821 cgttgttggcgacggggtcggcgaggtg 794
>dbj|AK103926.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-D02, full insert sequence Length = 1000 Score = 40.1 bits (20), Expect = 2.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 154 cgttgttgttgacggggtcggcgaggtg 181 |||||||| |||||||||||||||||| Sbjct: 826 cgttgttggcgacggggtcggcgaggtg 799
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 gttgttgacggggtcggcga 177 |||||||||||||||||||| Sbjct: 357104 gttgttgacggggtcggcga 357085
>dbj|AK068972.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001G03, full insert sequence Length = 1107 Score = 40.1 bits (20), Expect = 2.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 154 cgttgttgttgacggggtcggcgaggtg 181 |||||||| |||||||||||||||||| Sbjct: 822 cgttgttggcgacggggtcggcgaggtg 795
>dbj|AK066762.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075I09, full insert sequence Length = 1106 Score = 40.1 bits (20), Expect = 2.3 Identities = 50/60 (83%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcga 177 |||||||||| || ||||||| ||| | ||||| |||||||| |||||||||||||| Sbjct: 841 acttgccggggacgaagttggtggcgtatgcccaggcgttgttggcgacggggtcggcga 782
>dbj|AK061512.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-G12, full insert sequence Length = 1032 Score = 40.1 bits (20), Expect = 2.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 154 cgttgttgttgacggggtcggcgaggtg 181 |||||||| |||||||||||||||||| Sbjct: 828 cgttgttggcgacggggtcggcgaggtg 801
>dbj|AK058315.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-A06, full insert sequence Length = 685 Score = 40.1 bits (20), Expect = 2.3 Identities = 50/60 (83%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcga 177 |||||||||| || ||||||| ||| | ||||| |||||||| |||||||||||||| Sbjct: 416 acttgccggggacgaagttggtggcgtatgcccaggcgttgttggcgacggggtcggcga 357
>gb|AF061577.1|AF061577 Oryza sativa chlorophyll a/b binding protein (RCABP89) mRNA, nuclear gene encoding chloroplast protein, complete cds Length = 1027 Score = 40.1 bits (20), Expect = 2.3 Identities = 50/60 (83%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcga 177 |||||||||| || ||||||| ||| | ||||| |||||||| |||||||||||||| Sbjct: 830 acttgccggggacgaagttggtggcgtatgcccaggcgttgttggcgacggggtcggcga 771
>gb|AF022739.1|AF022739 Oryza sativa chlorophyll a-b binding protein mRNA, complete cds Length = 1100 Score = 40.1 bits (20), Expect = 2.3 Identities = 50/60 (83%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcga 177 |||||||||| ||||| |||| ||| | ||||| |||||||| |||||||||||||| Sbjct: 837 acttgccggggacaaaattggtggcgtatgcccaggcgttgttggcgacggggtcggcga 778
>gb|U39475.1|GMU39475 Glycine max chlorophyll a/b-binding protein (cab3) mRNA, nuclear gene encoding chloroplast protein, complete cds Length = 977 Score = 40.1 bits (20), Expect = 2.3 Identities = 53/64 (82%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcga 177 |||||||||| || ||||||| ||| ||||||| | ||||||||||| ||||| || | Sbjct: 821 acttgccggggacgaagttggtggcgtaggcccaggcattgttgttgactgggtccgcaa 762 Query: 178 ggtg 181 |||| Sbjct: 761 ggtg 758
>gb|U20983.1|STU20983 Solanum tuberosum chlorophyll a/b binding protein (Lhcb1-2) gene, nuclear gene encoding chloroplast protein, complete cds Length = 798 Score = 40.1 bits (20), Expect = 2.3 Identities = 38/44 (86%) Strand = Plus / Minus Query: 123 ccgggcacaaagttgggggcaaaggcccacccgttgttgttgac 166 ||||| |||||||| | |||||||||||| | ||||||||||| Sbjct: 791 ccgggaacaaagtttgtggcaaaggcccatgcattgttgttgac 748
>gb|AC145321.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0094P07, complete sequence Length = 162311 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 157 tgttgttgacggggtcggcgagg 179 ||||| ||||||||||||||||| Sbjct: 120569 tgttgctgacggggtcggcgagg 120547 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 157 tgttgttgacggggtcggcgagg 179 ||||| ||||||||||||||||| Sbjct: 47924 tgttgctgacggggtcggcgagg 47902
>gb|AC145307.3| Mus musculus BAC clone RP24-400C6 from chromosome 17, complete sequence Length = 203180 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 79 gtacacacatactcatgaa 97 ||||||||||||||||||| Sbjct: 67258 gtacacacatactcatgaa 67276 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 79 gtacacacatactcatgaa 97 ||||||||||||||||||| Sbjct: 67162 gtacacacatactcatgaa 67180
>gb|AC124583.4| Mus musculus BAC clone RP23-123P18 from chromosome 17, complete sequence Length = 221980 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 79 gtacacacatactcatgaa 97 ||||||||||||||||||| Sbjct: 159379 gtacacacatactcatgaa 159397 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 79 gtacacacatactcatgaa 97 ||||||||||||||||||| Sbjct: 159283 gtacacacatactcatgaa 159301
>emb|AL138926.13| Human DNA sequence from clone RP11-173E24 on chromosome 1q31.1-31.3, complete sequence Length = 169162 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 1 gttccatatgggccctcaa 19 ||||||||||||||||||| Sbjct: 137531 gttccatatgggccctcaa 137549
>gb|AC123518.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0088N01, complete sequence Length = 123954 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 157 tgttgttgacggggtcggcgagg 179 ||||| ||||||||||||||||| Sbjct: 100740 tgttgctgacggggtcggcgagg 100718
>gb|AC102463.12| Mus musculus chromosome 1, clone RP24-328M5, complete sequence Length = 155111 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 79 gtacacacatactcatgaa 97 ||||||||||||||||||| Sbjct: 115036 gtacacacatactcatgaa 115054
>emb|AJ439060.1|AGA439060 Anopheles gambiae DNA from 2R chromosome, clone 11N17 Length = 147295 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 42 acaacatcaacgatccgat 60 ||||||||||||||||||| Sbjct: 77330 acaacatcaacgatccgat 77348
>gb|AC154419.2| Mus musculus BAC clone RP24-212C1 from chromosome 14, complete sequence Length = 167114 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 18 aattgtaaacatttttgataggg 40 ||||||||||||||| ||||||| Sbjct: 22084 aattgtaaacattttagataggg 22106
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 157 tgttgttgacggggtcggcgagg 179 ||||| ||||||||||||||||| Sbjct: 4795947 tgttggtgacggggtcggcgagg 4795925 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 157 tgttgttgacggggtcggcgagg 179 ||||| ||||||||||||||||| Sbjct: 4774961 tgttggtgacggggtcggcgagg 4774939
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 157 tgttgttgacggggtcggcgagg 179 ||||| ||||||||||||||||| Sbjct: 5249475 tgttgctgacggggtcggcgagg 5249497 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 157 tgttgttgacggggtcggcgagg 179 ||||| ||||||||||||||||| Sbjct: 5176830 tgttgctgacggggtcggcgagg 5176852 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 157 tgttgttgacggggtcggcgagg 179 ||||| ||||||||||||||||| Sbjct: 248477 tgttggtgacggggtcggcgagg 248455
>dbj|D00571.1|PYPLHABBP Pyrus pyrifolia var. culta mRNA for light harvesting a/b binding protein, complete cds Length = 1055 Score = 38.2 bits (19), Expect = 8.9 Identities = 49/59 (83%) Strand = Plus / Minus Query: 123 ccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtcggcgaggtg 181 ||||| || ||||||| ||| ||||||| | |||||||| ||||||||||| ||||| Sbjct: 892 ccggggacgaagttggtggcgtaggcccaggcattgttgttcacggggtcggccaggtg 834
>gb|AC175464.1| Mus musculus BAC clone RP23-129E4 from chromosome 16, complete sequence Length = 224605 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 105 ttttcaagggtttacttgc 123 ||||||||||||||||||| Sbjct: 102771 ttttcaagggtttacttgc 102789
>gb|AC167668.1| Mus musculus BAC clone RP24-241I19 from chromosome 14, complete sequence Length = 173679 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 18 aattgtaaacatttttgataggg 40 ||||||||||||||| ||||||| Sbjct: 36285 aattgtaaacattttagataggg 36263
>dbj|AP006526.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0591A03 Length = 147043 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 135 ttgggggcaaaggcccacc 153 ||||||||||||||||||| Sbjct: 16068 ttgggggcaaaggcccacc 16086
>dbj|AB122115.1| Chlamydomonas reinhardtii LhcI-2 gene for light-harvesting chlorophyll-a/b protein of photosystem I (Type III), complete cds Length = 2389 Score = 38.2 bits (19), Expect = 8.9 Identities = 25/27 (92%) Strand = Plus / Minus Query: 155 gttgttgttgacggggtcggcgaggtg 181 |||||||||||||||||| || ||||| Sbjct: 2214 gttgttgttgacggggtcagccaggtg 2188
>dbj|AK121578.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033036K16, full insert sequence Length = 1861 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 157 tgttgttgacggggtcggcgagg 179 ||||| ||||||||||||||||| Sbjct: 367 tgttgctgacggggtcggcgagg 345
>dbj|AK111754.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056F18, full insert sequence Length = 2791 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 157 tgttgttgacggggtcggcgagg 179 ||||| ||||||||||||||||| Sbjct: 459 tgttggtgacggggtcggcgagg 437
>ref|XM_321513.2| Anopheles gambiae str. PEST ENSANGP00000018135 (ENSANGG00000015646), partial mRNA Length = 5643 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 42 acaacatcaacgatccgat 60 ||||||||||||||||||| Sbjct: 3548 acaacatcaacgatccgat 3566
>emb|X16647.1|RSCHABBP Radish mRNA for chlorophyll a/b binding protein of photosystem II Length = 518 Score = 38.2 bits (19), Expect = 8.9 Identities = 46/55 (83%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtc 172 |||| ||||| || ||||||| || |||||||| ||||||||||||| ||||| Sbjct: 373 actttccggggacgaagttggtagcgaaggcccatgcgttgttgttgactgggtc 319
>dbj|AK072329.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023039E06, full insert sequence Length = 2667 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 157 tgttgttgacggggtcggcgagg 179 ||||| ||||||||||||||||| Sbjct: 367 tgttgctgacggggtcggcgagg 345
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 157 tgttgttgacggggtcggcgagg 179 ||||| ||||||||||||||||| Sbjct: 5315952 tgttgctgacggggtcggcgagg 5315974 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 157 tgttgttgacggggtcggcgagg 179 ||||| ||||||||||||||||| Sbjct: 5243307 tgttgctgacggggtcggcgagg 5243329 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 157 tgttgttgacggggtcggcgagg 179 ||||| ||||||||||||||||| Sbjct: 248477 tgttggtgacggggtcggcgagg 248455
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 157 tgttgttgacggggtcggcgagg 179 ||||| ||||||||||||||||| Sbjct: 4795928 tgttggtgacggggtcggcgagg 4795906 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 157 tgttgttgacggggtcggcgagg 179 ||||| ||||||||||||||||| Sbjct: 4774942 tgttggtgacggggtcggcgagg 4774920
>emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa0032J07 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 160673 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 157 tgttgttgacggggtcggcgagg 179 ||||| ||||||||||||||||| Sbjct: 56516 tgttggtgacggggtcggcgagg 56538
>emb|AL713946.3|CNS07YPP Oryza sativa chromosome 12, . BAC OJ1005_B07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 161762 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 157 tgttgttgacggggtcggcgagg 179 ||||| ||||||||||||||||| Sbjct: 72170 tgttggtgacggggtcggcgagg 72192 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 157 tgttgttgacggggtcggcgagg 179 ||||| ||||||||||||||||| Sbjct: 51184 tgttggtgacggggtcggcgagg 51206
>gb|AC129222.4| Mus musculus BAC clone RP24-532L14 from 14, complete sequence Length = 181469 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 77 gagtacacacatactcatgaaaa 99 |||||||||||||| |||||||| Sbjct: 104800 gagtacacacatacacatgaaaa 104822
>emb|AL672253.7| Mouse DNA sequence from clone RP23-13G19 on chromosome 2, complete sequence Length = 182150 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 84 cacatactcatgaaaactc 102 ||||||||||||||||||| Sbjct: 179339 cacatactcatgaaaactc 179357
>dbj|AB013728.1| Cryptomeria japonica mRNA for light-harvesting chlorophyll a/b-binding protein of photosystem II, complete cds Length = 935 Score = 38.2 bits (19), Expect = 8.9 Identities = 46/55 (83%) Strand = Plus / Minus Query: 118 acttgccgggcacaaagttgggggcaaaggcccacccgttgttgttgacggggtc 172 |||| ||||| |||||||| | |||| | ||||| ||||||||||||| ||||| Sbjct: 810 acttcccgggaacaaagttagtggcataagcccaggcgttgttgttgacagggtc 756 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,432,157 Number of Sequences: 3902068 Number of extensions: 1432157 Number of successful extensions: 102283 Number of sequences better than 10.0: 173 Number of HSP's better than 10.0 without gapping: 175 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 101572 Number of HSP's gapped (non-prelim): 712 length of query: 181 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 159 effective length of database: 17,147,199,772 effective search space: 2726404763748 effective search space used: 2726404763748 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
