>E75BB_DROME (P13055) Ecdysone-induced protein 75B isoform B (E75-C)|
          Length = 1412

 Score = 31.2 bits (69), Expect = 0.67
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 26  HKTVVASQHVQEPRSRPDSHTHKVNKQQSRAHQTH 130
           H  V+AS H Q+ + +  +  H+   QQ + HQ H
Sbjct: 313 HVNVIASNHFQQQQQQHQAQQHQQQHQQHQQHQQH 347

>MOT3_YEAST (P54785) Transcriptional activator/repressor MOT3 (Modulator of|
           transcription protein 3) (Hypoxic gene repressor protein
           7)
          Length = 490

 Score = 30.8 bits (68), Expect = 0.87
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
 Frame = +2

Query: 41  ASQHVQEPRSRPDSHTHKVNKQQSRAH----QTHTRIQR-ANTDDVGTASL 178
           A  H+Q+ + +   H  + ++QQ   H    Q HT +Q  +NT+++G+ SL
Sbjct: 3   ADHHLQQQQQQRQQHQQQQHQQQQHQHQHQQQQHTILQNVSNTNNIGSDSL 53

>VE6_HPV2A (P25484) Protein E6|
          Length = 153

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 9/39 (23%)
 Frame = -2

Query: 135 LVCVWCARDCCLFTLW---------VWLSGLDLGSCTCC 46
           L+CVWC R      +W         VW  G   G+C  C
Sbjct: 27  LLCVWCKRPLSEADIWAFAIKELFVVWRKGFPFGACGKC 65

>RL4_METAC (Q8TRU6) 50S ribosomal protein L4P|
          Length = 253

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 73  ARQPHPQGKQTAITCTPNAYKNTKSKYRRRRHGVPTACAVTS 198
           AR PH +G + A    P A ++ K   + RR+ + +A A T+
Sbjct: 81  ARVPHAKGGRRAHPPKPEADRSEKVNTKERRYAIRSAIAATT 122

>RL4_METMA (Q8PV49) 50S ribosomal protein L4P|
          Length = 253

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 73  ARQPHPQGKQTAITCTPNAYKNTKSKYRRRRHGVPTACAVT 195
           AR PH +G + A    P A ++ K   + RR+ + +A A T
Sbjct: 81  ARVPHAKGGRRAHPPKPEADRSEKVNTKERRYAIRSAIAAT 121

>H15_DROME (Q94890) T-box protein H15|
          Length = 660

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 12/47 (25%), Positives = 20/47 (42%)
 Frame = +2

Query: 35  VVASQHVQEPRSRPDSHTHKVNKQQSRAHQTHTRIQRANTDDVGTAS 175
           V   Q  Q+ + R  +H H    +Q R H  H      N+ + G ++
Sbjct: 166 VAQQQQQQQQQQRQQTHHHATTGKQQRQHHNHHSSNTNNSSNSGNSN 212

>CCD13_HUMAN (Q8IYE1) Coiled-coil domain-containing protein 13|
          Length = 715

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = +2

Query: 2   QAKLNYYYHKTVVASQHVQEPRSRPDSHTHKVNKQQSRAHQTHTRIQRANTDDVGTAS 175
           + KL    H+TVV  QH+++ R  P     K +  Q  A +T T +  +N     T S
Sbjct: 585 ERKLQEERHRTVVLEQHLEKIRLEPG----KASASQRAAPRTKTGLPTSNNRHNPTGS 638

>RAD17_PONPY (Q5R652) Cell cycle checkpoint protein RAD17|
          Length = 681

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +1

Query: 43  ITTRTRAEI*ARQPHPQGKQTAITCTPNAYKNTKSKYRRRRHGV 174
           + T  +A++  RQP   G    IT  P   K T  K   + HG+
Sbjct: 113 VETWLKAQVLERQPKQGGSILLITGPPGCGKTTTIKILSKEHGI 156

>RAD17_HUMAN (O75943) Cell cycle checkpoint protein RAD17 (hRad17)|
           (RF-C/activator 1 homolog)
          Length = 681

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +1

Query: 43  ITTRTRAEI*ARQPHPQGKQTAITCTPNAYKNTKSKYRRRRHGV 174
           + T  +A++  RQP   G    IT  P   K T  K   + HG+
Sbjct: 113 VETWLKAQVLERQPKQGGSILLITGPPGCGKTTTLKILSKEHGI 156

>RAD17_CERAE (Q9XT62) Cell cycle checkpoint protein RAD17|
          Length = 670

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +1

Query: 43  ITTRTRAEI*ARQPHPQGKQTAITCTPNAYKNTKSKYRRRRHGV 174
           + T  +A++  RQP   G    IT  P   K T  K   + HG+
Sbjct: 102 VETWLKAQVLERQPKQGGSILLITGPPGCGKTTTIKVLSKEHGI 145


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,646,148
Number of Sequences: 219361
Number of extensions: 674006
Number of successful extensions: 2221
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2221
length of database: 80,573,946
effective HSP length: 89
effective length of database: 61,050,817
effective search space used: 1465219608
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)