>SPAK_BACSU (P33113) Subtilin biosynthesis sensor protein spaK (EC 2.7.13.3)|
          Length = 459

 Score = 31.2 bits (69), Expect = 0.63
 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
 Frame = +1

Query: 1   KQKGGIIHTPTSRLCTISFSHRSRFTSPKIQAY*KLYRSKQGCLQISFSERNHVLSTTYI 180
           KQKG ++    +  C + +S R+ F+SP ++ Y   Y     C+ I        + TTY 
Sbjct: 116 KQKGYLVIERNNEYCVLQYSLRADFSSPLLRKYLPNYELTSICILIILLIIVISIITTYF 175

Query: 181 -------FLTSGALNQFFKANN 225
                  F T   + ++ K  N
Sbjct: 176 ANRLRKHFETLNVITRYIKEQN 197

>ILRL1_RAT (Q62611) Interleukin-1 receptor-like 1 precursor (Fos-responsive|
           gene 1 protein) (Fit-1)
          Length = 566

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +2

Query: 26  HRPVDFAQSVSHTAAGSHRQRYRHTENCTGPSKAAYKSHSVNE 154
           H    F   VSH   G +  R+ HTEN T     A +S +V E
Sbjct: 168 HMSYLFIDKVSHVDEGDYTCRFTHTENGTNYIVTATRSFTVEE 210

>HES1_YEAST (P35843) Protein HES1 (Oxysterol-binding protein homolog 5)|
          Length = 434

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 6/96 (6%)
 Frame = +1

Query: 19  IHTPTSRLCTISFSHRSRFTSPKIQAY*KLYRS------KQGCLQISFSERNHVLSTTYI 180
           I +    LC I FS R  FT  K     ++YRS      K+  L +   + + V  +T I
Sbjct: 221 IQSSNGMLCVIEFSGRGYFTGKKNSFKARIYRSPQEHSHKENALYLISGQWSGV--STII 278

Query: 181 FLTSGALNQFFKANNPKARSALNNSFKANNPKVRRR 288
              S   +QF+ ++       L    +  +P   RR
Sbjct: 279 KKDSQVSHQFYDSSETPTEHLLVKPIEEQHPLESRR 314

>RS2_THEMA (Q9WZM1) 30S ribosomal protein S2|
          Length = 262

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +1

Query: 49  ISFSHRSRFTSPKIQAY*KLYRSKQGCLQISFSERNHVLSTTYIFLTSGA 198
           + F HR+R  +PK+  Y  +Y  ++G   I   +   +L   Y F+   A
Sbjct: 14  VHFGHRTRRWNPKMAPY--IYTERKGIYIIDLQKTQQLLEEAYYFVREKA 61

>GSTM2_PONPY (Q5R8E8) Glutathione S-transferase Mu 2 (EC 2.5.1.18) (GSTM2-2)|
           (GST class-mu 2)
          Length = 217

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 24/81 (29%), Positives = 38/81 (46%)
 Frame = +3

Query: 114 VQARLPTNLIQ*TKSCT*YNIHLPDFRRIKPVL*GKQPQSTERIKQFL*GKQPQSTEKAE 293
           ++ +L  N +Q  + C  YN   PDF ++KP      P+  +   QFL GKQP       
Sbjct: 99  LENQLMDNRMQLARLC--YN---PDFEKLKPEYLEGLPEMLKLYSQFL-GKQPWFLGDKI 152

Query: 294 QCIHFITIHQVIPQNSTKHPT 356
             + FI  + V+ +N    P+
Sbjct: 153 TFVDFIA-YDVLERNQVFEPS 172

>RS2_GLOVI (Q7NJK2) 30S ribosomal protein S2|
          Length = 274

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 13/57 (22%), Positives = 28/57 (49%)
 Frame = +1

Query: 16  IIHTPTSRLCTISFSHRSRFTSPKIQAY*KLYRSKQGCLQISFSERNHVLSTTYIFL 186
           ++  P      + F H++R  +PK++ Y  ++  + G   I  ++  H+L   Y +L
Sbjct: 3   VVSLPQMLEAGVHFGHQTRRWNPKMRRY--IFTDRNGIHIIDLTQTAHLLDEAYSYL 57

>ILRL1_MOUSE (P14719) Interleukin-1 receptor-like 1 precursor (ST2 protein) (T1|
           protein) (Lymphocyte antigen 84)
          Length = 567

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 26  HRPVDFAQSVSHTAAGSHRQRYRHTENCTGPSKAAYKSHSVNE 154
           HR   F  +V+H   G +  ++ H EN T     A +S +V E
Sbjct: 168 HRSYLFIDNVTHDDEGDYTCQFTHAENGTNYIVTATRSFTVEE 210

>YNK6_YEAST (P50942) Hypothetical 133.3 kDa protein in CYB5-LEU4 intergenic|
           region
          Length = 1183

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 78  IAKDTGILKIVQVQARLPTNLIQ*TKSCT*YNIHLPDFRRIKP 206
           I++  G+ +   +     TNLIQ T S   + + L DFR +KP
Sbjct: 435 ISEQDGVFRTNCLDCLDRTNLIQQTISLAVFKLFLEDFRLVKP 477

>TEA1_YEAST (P47988) TY1 enhancer activator|
          Length = 759

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +1

Query: 67  SRFTSPKIQAY*KLY--RSKQGCLQISFSERNHVLSTTYIFLTSGALNQFFKANN 225
           SR T P +Q Y ++Y  RSK+  LQ+ F E++    TT   L   A  +  K NN
Sbjct: 380 SRLT-PDLQEYSEVYYQRSKKTLLQLVFDEQSTARITTVQALFCLAFYELGKGNN 433

>MUTL_LACPL (Q88UZ8) DNA mismatch repair protein mutL|
          Length = 678

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 49  ISFSHRSRFTSPKIQAY*KLYRSKQGCLQISFSERNHVLSTT 174
           I  SHR   T+  +QA+ + Y+S+ G L   F E    L T+
Sbjct: 425 IMISHRDELTATPVQAFDQRYQSESGAL--PFGETAEPLETS 464

>VIME_ONCMY (P48674) Vimentin|
          Length = 461

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 28/76 (36%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
 Frame = +1

Query: 64  RSRFTSPKIQAY*KLYRSKQGCLQISFSERNHVLSTTYIFLTSGALNQFFKAN--NPKAR 237
           RS   S  + A   +Y SK   L+ S +    + S T  F  S A+N  FKAN  N KA 
Sbjct: 44  RSSRMSYSVSAPPSIYASKNVRLRSS-APMPRLSSDTVDFALSDAINSEFKANRTNEKAE 102

Query: 238 -SALNNSFKANNPKVR 282
              LN+ F +   KVR
Sbjct: 103 MQHLNDRFASYIDKVR 118

>MTF1_RHIRA (Q01214) Putative transcription factor MTF1|
          Length = 353

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
 Frame = +2

Query: 26  HRPVDFAQSVSHTAAGSHRQR-YRH-------TENCTGPSKAAYKSHSVNEIMYLVQH 175
           H P+ F+   S +   S++ R +R+       + N + PS ++ KSH+     Y V+H
Sbjct: 103 HIPISFSAITSPSVLSSYKSRDFRNLFTTTNSSPNPSSPSPSSMKSHTRKNSKYTVRH 160


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,656,064
Number of Sequences: 219361
Number of extensions: 1049367
Number of successful extensions: 2198
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2198
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 1380984984
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)