ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet122g05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1S17P_WHEAT (P46285) Sedoheptulose-1,7-bisphosphatase, chloroplas... 62 1e-10
2S17P_ARATH (P46283) Sedoheptulose-1,7-bisphosphatase, chloroplas... 52 4e-07
3S17P_SPIOL (O20252) Sedoheptulose-1,7-bisphosphatase, chloroplas... 44 1e-04
4S17P_CHLRE (P46284) Sedoheptulose-1,7-bisphosphatase, chloroplas... 33 0.14
5F16P_XANFL (P23014) Fructose-1,6-bisphosphatase (EC 3.1.3.11) (D... 28 4.4
6RKHD1_HUMAN (Q86XN8) RING finger and KH domain-containing protein 1 28 4.4
7PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-b... 28 7.5
8QUEA_XYLFA (Q9PDR5) S-adenosylmethionine:tRNA ribosyltransferase... 28 7.5
9F16P1_HUMAN (P09467) Fructose-1,6-bisphosphatase 1 (EC 3.1.3.11)... 28 7.5
10ANLN_XENLA (Q801E2) Actin-binding protein anillin 27 9.8

>S17P_WHEAT (P46285) Sedoheptulose-1,7-bisphosphatase, chloroplast precursor|
           (EC 3.1.3.37) (Sedoheptulose-bisphosphatase) (SBPase)
           (SED(1,7)P2ase)
          Length = 393

 Score = 62.0 bits (149), Expect(2) = 1e-10
 Identities = 30/32 (93%), Positives = 32/32 (100%)
 Frame = -1

Query: 331 NDGKQSVLDKVITVLDERTQVAYGSKNEIIRF 236
           +DGKQSVLDKVI+VLDERTQVAYGSKNEIIRF
Sbjct: 342 SDGKQSVLDKVISVLDERTQVAYGSKNEIIRF 373



 Score = 21.6 bits (44), Expect(2) = 1e-10
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = -3

Query: 233 ETLYGSSRL 207
           ETLYGSSRL
Sbjct: 375 ETLYGSSRL 383



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>S17P_ARATH (P46283) Sedoheptulose-1,7-bisphosphatase, chloroplast precursor|
           (EC 3.1.3.37) (Sedoheptulose-bisphosphatase) (SBPase)
           (SED(1,7)P2ase)
          Length = 393

 Score = 52.0 bits (123), Expect = 4e-07
 Identities = 25/32 (78%), Positives = 28/32 (87%)
 Frame = -1

Query: 331 NDGKQSVLDKVITVLDERTQVAYGSKNEIIRF 236
           +DG +SVLDK I  LD+RTQVAYGSKNEIIRF
Sbjct: 343 SDGHKSVLDKTIINLDDRTQVAYGSKNEIIRF 374



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>S17P_SPIOL (O20252) Sedoheptulose-1,7-bisphosphatase, chloroplast precursor|
           (EC 3.1.3.37) (Sedoheptulose-bisphosphatase) (SBPase)
           (SED(1,7)P2ase)
          Length = 387

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 21/32 (65%), Positives = 26/32 (81%)
 Frame = -1

Query: 331 NDGKQSVLDKVITVLDERTQVAYGSKNEIIRF 236
           ++G +SVLD  +  LD+RTQVAYGS NEIIRF
Sbjct: 336 SEGTKSVLDIEVKNLDDRTQVAYGSLNEIIRF 367



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>S17P_CHLRE (P46284) Sedoheptulose-1,7-bisphosphatase, chloroplast precursor|
           (EC 3.1.3.37) (Sedoheptulose-bisphosphatase) (SBPase)
           (SED(1,7)P2ase)
          Length = 389

 Score = 33.5 bits (75), Expect = 0.14
 Identities = 18/32 (56%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -1

Query: 328 DGKQ-SVLDKVITVLDERTQVAYGSKNEIIRF 236
           DGK  S LD  I V D+RTQ+ YGS  E+ RF
Sbjct: 341 DGKAVSALDIPILVCDQRTQICYGSIGEVRRF 372



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>F16P_XANFL (P23014) Fructose-1,6-bisphosphatase (EC 3.1.3.11)|
           (D-fructose-1,6-bisphosphate 1-phosphohydrolase)
           (FBPase)
          Length = 364

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 328 DGKQSVLDKVITVLDERTQVAYGSKNEIIRFGR 230
           DG+ ++LD   T L +R    +GS++E+ R  R
Sbjct: 310 DGRGAILDLSATGLHQRVPFIFGSRDEVARVSR 342



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>RKHD1_HUMAN (Q86XN8) RING finger and KH domain-containing protein 1|
          Length = 485

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 326 RQAVGAGQGDHRPRRADPGGLRLQ 255
           R++ GAG   H P   +PGGLRL+
Sbjct: 337 RRSSGAGTPRHSPTLPEPGGLRLE 360



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>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein|
           PUB1 (ARS consensus-binding protein ACBP-60)
           (Poly(U)-binding protein) (Poly uridylate-binding
           protein)
          Length = 452

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 37  SARPLYYQFASSQDNNNNNSMLQ 105
           + RPL   +A+ +DNNNNN+  Q
Sbjct: 228 NGRPLRINWAAKRDNNNNNNYQQ 250



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>QUEA_XYLFA (Q9PDR5) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC|
           5.-.-.-) (Queuosine biosynthesis protein queA)
          Length = 347

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
 Frame = +2

Query: 107 LYNGQLVLTFRLKGKKKEGG---VIIXXXXXXXXXXXXXXXXKGSPEADDLVLGAVGHLG 277
           ++N   V+  RL G+K  GG   ++I                +     + ++L A GH G
Sbjct: 58  VFNDTRVIPARLFGRKVSGGRVEILIERFLGTHQAVVQLRTSRSLKVGNRILLDAGGHAG 117

Query: 278 PLVEDGD 298
            L  DGD
Sbjct: 118 VLGRDGD 124



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>F16P1_HUMAN (P09467) Fructose-1,6-bisphosphatase 1 (EC 3.1.3.11)|
           (D-fructose-1,6-bisphosphate 1-phosphohydrolase 1)
           (FBPase 1)
          Length = 337

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 325 GKQSVLDKVITVLDERTQVAYGSKNEIIRF 236
           GK++VLD + T + +R  V  GS ++++ F
Sbjct: 298 GKEAVLDVIPTDIHQRAPVILGSPDDVLEF 327



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>ANLN_XENLA (Q801E2) Actin-binding protein anillin|
          Length = 1116

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +1

Query: 31  RPSARPLYYQFASSQDNNNNNSMLQT 108
           RP++R   YQ AS+++  NNN+ +QT
Sbjct: 330 RPASRIYSYQSASARNELNNNTPVQT 355


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,097,919
Number of Sequences: 219361
Number of extensions: 433168
Number of successful extensions: 1226
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1222
length of database: 80,573,946
effective HSP length: 85
effective length of database: 61,928,261
effective search space used: 1486278264
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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