ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet122g04 |
|---|---|
| Clone Library Name | barley_pub |
>CB26_ARATH (Q9XF89) Chlorophyll a-b binding protein CP26, chloroplast| precursor (Light-harvesting complex II protein 5) (LHCB5) (LHCIIc) Length = 280 Score = 68.2 bits (165), Expect = 5e-12 Identities = 31/38 (81%), Positives = 33/38 (86%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNNLLTVISGAAERVPS 264 QAYVTGEGP ENL HLSDPFGNNLLTVI+G AER P+ Sbjct: 242 QAYVTGEGPVENLAKHLSDPFGNNLLTVIAGTAERAPT 279
>CB13_LYCES (P27522) Chlorophyll a-b binding protein 8, chloroplast precursor| (LHCI type III CAB-8) Length = 273 Score = 40.4 bits (93), Expect = 0.001 Identities = 17/27 (62%), Positives = 21/27 (77%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNNLLT 297 QA VTG GP++NL HL+DP NN+LT Sbjct: 242 QALVTGVGPYQNLLDHLADPVNNNVLT 268
>CB28_PEA (P27490) Chlorophyll a-b binding protein 8, chloroplast precursor| (LHCII type I CAB-8) Length = 268 Score = 39.3 bits (90), Expect = 0.002 Identities = 17/24 (70%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL HLSDP NN Sbjct: 233 QAIVTGKGPLENLADHLSDPVNNN 256
>CB2B_PINSY (P15194) Chlorophyll a-b binding protein type 2 member 1B,| chloroplast precursor (Chlorophyll a-b binding protein type II 1B) (CAB) (LHCP) Length = 274 Score = 38.1 bits (87), Expect = 0.005 Identities = 16/24 (66%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL HL+DP NN Sbjct: 239 QAIVTGKGPIENLADHLADPVNNN 262
>CB25_NICPL (P12470) Chlorophyll a-b binding protein E, chloroplast precursor| (LHCII type I CAB-E) (LHCP) Length = 266 Score = 38.1 bits (87), Expect = 0.005 Identities = 16/24 (66%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL HL+DP NN Sbjct: 231 QALVTGKGPLENLADHLADPVNNN 254
>CB24_PETSP (P04782) Chlorophyll a-b binding protein 25, chloroplast precursor| (LHCII type I CAB-25) (LHCP) Length = 266 Score = 38.1 bits (87), Expect = 0.005 Identities = 16/24 (66%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL HL+DP NN Sbjct: 231 QAIVTGKGPLENLADHLADPVNNN 254
>CB21_TOBAC (P27492) Chlorophyll a-b binding protein 16, chloroplast precursor| (LHCII type I CAB-16) (LHCP) Length = 266 Score = 38.1 bits (87), Expect = 0.005 Identities = 16/24 (66%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL HL+DP NN Sbjct: 231 QAIVTGKGPLENLADHLADPVNNN 254
>CB21_SINAL (P13851) Chlorophyll a-b binding protein 1, chloroplast precursor| (LHCII type I CAB-1) (LHCP) Length = 266 Score = 38.1 bits (87), Expect = 0.005 Identities = 16/24 (66%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL HL+DP NN Sbjct: 231 QAIVTGKGPLENLADHLADPVNNN 254
>CB21_PETSP (P04779) Chlorophyll a-b binding protein 13, chloroplast precursor| (LHCII type I CAB-13) (LHCP) Length = 266 Score = 38.1 bits (87), Expect = 0.005 Identities = 16/24 (66%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL HL+DP NN Sbjct: 231 QAIVTGKGPLENLADHLADPVNNN 254
>CB22_CUCSA (P08222) Chlorophyll a-b binding protein of LHCII type 1| (Chlorophyll a-b binding protein of LHCII type I) (CAB) (LHCP) (Fragment) Length = 206 Score = 38.1 bits (87), Expect = 0.005 Identities = 16/24 (66%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL HL+DP NN Sbjct: 171 QAIVTGKGPLENLADHLADPVNNN 194
>CB21_RAPSA (P14584) Chlorophyll a-b binding of LHCII type 1 protein| (Chlorophyll a-b binding of LHCII type I protein) (CAB) (LHCP) (Fragment) Length = 124 Score = 38.1 bits (87), Expect = 0.005 Identities = 16/24 (66%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL HL+DP NN Sbjct: 89 QAIVTGKGPLENLADHLADPVNNN 112
>CB2G_LYCES (P07369) Chlorophyll a-b binding protein 3C, chloroplast precursor| (LHCII type I CAB-3C) (LHCP) Length = 267 Score = 38.1 bits (87), Expect = 0.005 Identities = 16/24 (66%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL HL+DP NN Sbjct: 232 QAIVTGKGPLENLADHLADPVNNN 255
>CB2D_LYCES (P10707) Chlorophyll a-b binding protein 1D (LHCII type I CAB-1D)| (LHCP) (Fragment) Length = 116 Score = 38.1 bits (87), Expect = 0.005 Identities = 16/24 (66%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL HL+DP NN Sbjct: 81 QAIVTGKGPLENLADHLADPVNNN 104
>CB2A_SPIOL (P12333) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 267 Score = 38.1 bits (87), Expect = 0.005 Identities = 16/24 (66%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL HL+DP NN Sbjct: 232 QAIVTGKGPLENLADHLADPVNNN 255
>CB25_TOBAC (P27496) Chlorophyll a-b binding protein 50, chloroplast precursor| (LHCII type I CAB-50) (LHCP) Length = 267 Score = 38.1 bits (87), Expect = 0.005 Identities = 16/24 (66%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL HL+DP NN Sbjct: 232 QAIVTGKGPLENLADHLADPVNNN 255
>CB25_PETSP (P04783) Chlorophyll a-b binding protein 91R, chloroplast precursor| (LHCII type I CAB-91R) (LHCP) Length = 267 Score = 38.1 bits (87), Expect = 0.005 Identities = 16/24 (66%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL HL+DP NN Sbjct: 232 QAIVTGKGPLENLADHLADPVNNN 255
>CB24_TOBAC (P27495) Chlorophyll a-b binding protein 40, chloroplast precursor| (LHCII type I CAB-40) (LHCP) Length = 267 Score = 38.1 bits (87), Expect = 0.005 Identities = 16/24 (66%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL HL+DP NN Sbjct: 232 QAIVTGKGPLENLADHLADPVNNN 255
>CB23_PETSP (P04781) Chlorophyll a-b binding protein 22R, chloroplast precursor| (LHCII type I CAB-22R) (LHCP) Length = 267 Score = 38.1 bits (87), Expect = 0.005 Identities = 16/24 (66%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL HL+DP NN Sbjct: 232 QAIVTGKGPLENLADHLADPVNNN 255
>CB23_NICPL (P12469) Chlorophyll a-b binding protein C, chloroplast precursor| (LHCII type I CAB-C) (LHCP) Length = 267 Score = 38.1 bits (87), Expect = 0.005 Identities = 16/24 (66%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL HL+DP NN Sbjct: 232 QAIVTGKGPLENLADHLADPVNNN 255
>CB22_ARATH (P04778) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (CAB-140) (LHCP) Length = 267 Score = 38.1 bits (87), Expect = 0.005 Identities = 16/24 (66%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL HL+DP NN Sbjct: 232 QAIVTGKGPIENLADHLADPVNNN 255
>CB21_ARATH (P04777) Chlorophyll a-b binding protein 165/180, chloroplast| precursor (LHCII type I CAB-165/180) Length = 267 Score = 38.1 bits (87), Expect = 0.005 Identities = 16/24 (66%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL HL+DP NN Sbjct: 232 QAIVTGKGPIENLADHLADPVNNN 255
>CB2A_PYRPY (P24006) Chlorophyll a-b binding protein 1A, chloroplast precursor| (LHCII type II CAB-1A) (LHCP) Length = 278 Score = 38.1 bits (87), Expect = 0.005 Identities = 16/24 (66%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL HL+DP NN Sbjct: 243 QAIVTGKGPIENLADHLADPVNNN 266
>CB2A_PINSY (P15193) Chlorophyll a-b binding protein type 2 member 1A,| chloroplast precursor (Chlorophyll a-b binding protein type II 1A) (CAB) (LHCP) Length = 278 Score = 38.1 bits (87), Expect = 0.005 Identities = 16/24 (66%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL HL+DP NN Sbjct: 243 QAIVTGKGPIENLADHLADPVNNN 266
>CB48_MAIZE (Q00827) Chlorophyll a-b binding protein 48, chloroplast precursor| (LHCII type I CAB-48) (LHCP) Length = 264 Score = 38.1 bits (87), Expect = 0.005 Identities = 16/24 (66%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL HL+DP NN Sbjct: 229 QAIVTGKGPIENLADHLTDPVNNN 252
>CB23_APIGR (P92919) Chlorophyll a-b binding protein, chloroplast precursor| (Allergen Api g 3) Length = 264 Score = 38.1 bits (87), Expect = 0.005 Identities = 16/24 (66%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL HL+DP NN Sbjct: 229 QAIVTGKGPLENLADHLADPVNNN 252
>CB22_HORVU (P08963) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (LHCP) Length = 264 Score = 38.1 bits (87), Expect = 0.005 Identities = 16/24 (66%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL HL+DP NN Sbjct: 229 QAIVTGKGPLENLADHLADPVNNN 252
>CB2C_LYCES (P14275) Chlorophyll a-b binding protein 1C, chloroplast precursor| (LHCII type I CAB-1C) (LHCP) (Fragments) Length = 265 Score = 38.1 bits (87), Expect = 0.005 Identities = 16/24 (66%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL HL+DP NN Sbjct: 230 QAIVTGKGPLENLADHLADPVNNN 253
>CB2B_LYCES (P07370) Chlorophyll a-b binding protein 1B, chloroplast precursor| (LHCII type I CAB-1B) (LHCP) Length = 265 Score = 38.1 bits (87), Expect = 0.005 Identities = 16/24 (66%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL HL+DP NN Sbjct: 230 QAIVTGKGPLENLADHLADPVNNN 253
>CB2A_LYCES (P14274) Chlorophyll a-b binding protein 1A, chloroplast precursor| (LHCII type I CAB-1A) (LHCP) (Fragments) Length = 265 Score = 38.1 bits (87), Expect = 0.005 Identities = 16/24 (66%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL HL+DP NN Sbjct: 230 QAIVTGKGPLENLADHLADPVNNN 253
>CB29_MAIZE (P27497) Chlorophyll a-b binding protein M9, chloroplast precursor| (LHCII type I CAB-M9) (LHCP) Length = 265 Score = 38.1 bits (87), Expect = 0.005 Identities = 16/24 (66%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL HL+DP NN Sbjct: 230 QAIVTGKGPLENLADHLADPVNNN 253
>CB22_TOBAC (P27493) Chlorophyll a-b binding protein 21, chloroplast precursor| (LHCII type I CAB-21) (LHCP) Length = 265 Score = 38.1 bits (87), Expect = 0.005 Identities = 16/24 (66%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL HL+DP NN Sbjct: 230 QAIVTGKGPLENLADHLADPVNNN 253
>CB21_ORYSA (P12330) Chlorophyll a-b binding protein 1, chloroplast precursor| (LHCII type I CAB-1) (LHCP) Length = 265 Score = 38.1 bits (87), Expect = 0.005 Identities = 16/24 (66%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL HL+DP NN Sbjct: 230 QAIVTGKGPLENLADHLADPVNNN 253
>CB22_ORYSA (P12331) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (LHCP) Length = 261 Score = 38.1 bits (87), Expect = 0.005 Identities = 16/24 (66%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL HL+DP NN Sbjct: 226 QAIVTGKGPLENLADHLADPVNNN 249
>CB22_PEA (P07371) Chlorophyll a-b binding protein AB80, chloroplast| precursor (LHCII type I CAB-AB80) (LHCP) Length = 269 Score = 38.1 bits (87), Expect = 0.005 Identities = 16/24 (66%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL HL+DP NN Sbjct: 234 QAIVTGKGPLENLADHLADPVNNN 257
>CB22_SOYBN (P09755) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (LHCP) Length = 256 Score = 38.1 bits (87), Expect = 0.005 Identities = 16/24 (66%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL HL+DP NN Sbjct: 221 QAIVTGKGPLENLADHLADPVNNN 244
>CB21_CUCSA (P08221) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) (Fragment) Length = 255 Score = 38.1 bits (87), Expect = 0.005 Identities = 16/24 (66%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL HL+DP NN Sbjct: 220 QAIVTGKGPLENLADHLADPVNNN 243
>CB24_ARATH (P27521) Chlorophyll a-b binding protein 4, chloroplast precursor| (LHCI type III CAB-4) (LHCP) Length = 251 Score = 37.7 bits (86), Expect = 0.007 Identities = 16/26 (61%), Positives = 20/26 (76%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNNLL 300 Q VTG+GPFENL HLSDP+ N ++ Sbjct: 222 QHNVTGKGPFENLLQHLSDPWHNTIV 247
>CB22_MAIZE (P06671) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 265 Score = 37.4 bits (85), Expect = 0.009 Identities = 15/24 (62%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL H++DP NN Sbjct: 230 QAIVTGKGPLENLADHIADPVNNN 253
>CB21_GOSHI (P27518) Chlorophyll a-b binding protein 151, chloroplast precursor| (LHCII type II CAB-151) (LHCP) Length = 265 Score = 37.4 bits (85), Expect = 0.009 Identities = 16/24 (66%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL HL+DP NN Sbjct: 230 QAIVTGKGPIENLFDHLADPVANN 253
>CB22_PINSY (P15192) Chlorophyll a-b binding protein type 2 member 2| (Chlorophyll a-b binding protein type II 2) (CAB) (LHCP) (Fragment) Length = 150 Score = 37.4 bits (85), Expect = 0.009 Identities = 16/24 (66%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL HL+DP NN Sbjct: 115 QAIVTGKGPIENLYDHLADPVANN 138
>CB2F_LYCES (P14277) Chlorophyll a-b binding protein 3B, chloroplast precursor| (LHCII type I CAB-3B) (LHCP) (Fragments) Length = 267 Score = 37.4 bits (85), Expect = 0.009 Identities = 15/24 (62%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL H++DP NN Sbjct: 232 QAIVTGKGPLENLADHIADPVNNN 255
>CB2E_LYCES (P14276) Chlorophyll a-b binding protein 3A, chloroplast precursor| (LHCII type I CAB-3A) (LHCP) (Fragments) Length = 267 Score = 37.4 bits (85), Expect = 0.009 Identities = 15/24 (62%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL H++DP NN Sbjct: 232 QAIVTGKGPLENLADHIADPVNNN 255
>CB21_LEMGI (P12328) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 264 Score = 37.4 bits (85), Expect = 0.009 Identities = 15/24 (62%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL H++DP NN Sbjct: 229 QAIVTGKGPIENLADHIADPVANN 252
>CB21_MAIZE (P12329) Chlorophyll a-b binding protein 1, chloroplast precursor| (LHCII type I CAB-1) (LHCP) Length = 262 Score = 37.4 bits (85), Expect = 0.009 Identities = 15/24 (62%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL H++DP NN Sbjct: 227 QAIVTGKGPLENLADHIADPVNNN 250
>CB21_PINTH (P10049) Chlorophyll a-b binding protein type I, chloroplast| precursor (CAB) (LHCP) Length = 266 Score = 37.4 bits (85), Expect = 0.009 Identities = 16/24 (66%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL HL+DP NN Sbjct: 231 QAIVTGKGPIENLYDHLADPVANN 254
>CB23_HORVU (P27523) Chlorophyll a-b binding protein of LHCII type III,| chloroplast precursor (CAB) Length = 268 Score = 37.0 bits (84), Expect = 0.012 Identities = 16/24 (66%), Positives = 17/24 (70%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL HL DP NN Sbjct: 233 QAIVTGKGPLENLFDHLDDPVANN 256
>CB25_LYCES (P14279) Chlorophyll a-b binding protein 5, chloroplast precursor| (LHCII type I CAB-5) (LHCP) (Fragment) Length = 237 Score = 37.0 bits (84), Expect = 0.012 Identities = 15/24 (62%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL H++DP NN Sbjct: 202 QAIVTGKGPIENLSDHIADPVANN 225
>CB22_PETSP (P04780) Chlorophyll a-b binding protein 22L, chloroplast precursor| (LHCII type I CAB-22L) (LHCP) Length = 267 Score = 37.0 bits (84), Expect = 0.012 Identities = 16/24 (66%), Positives = 17/24 (70%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL HL DP NN Sbjct: 232 QAIVTGKGPLENLADHLVDPVNNN 255
>CB24_LYCES (P14278) Chlorophyll a-b binding protein 4, chloroplast precursor| (LHCII type I CAB-4) (LHCP) Length = 265 Score = 37.0 bits (84), Expect = 0.012 Identities = 15/24 (62%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL H++DP NN Sbjct: 230 QAIVTGKGPIENLSDHINDPVANN 253
>CB2_PHYPA (P20866) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 269 Score = 37.0 bits (84), Expect = 0.012 Identities = 16/24 (66%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL HL+DP NN Sbjct: 233 QAIVTGKGPLENLNDHLADPVANN 256
>CB27_TOBAC (P27491) Chlorophyll a-b binding protein 7, chloroplast precursor| (LHCII type I CAB-7) (LHCP) Length = 267 Score = 36.6 bits (83), Expect = 0.015 Identities = 15/24 (62%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP +NL HL+DP NN Sbjct: 232 QAIVTGKGPLDNLVDHLADPVNNN 255
>CB21_EUGGR (P12327) Chlorophyll a-b binding protein of LHCII type 1| (Chlorophyll a-b binding protein of LHCII type I) (CAB) (LHCP) (Fragment) Length = 127 Score = 36.6 bits (83), Expect = 0.015 Identities = 17/29 (58%), Positives = 19/29 (65%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNNLLTVI 291 QA VTGEGP EN HL DP +N LT + Sbjct: 87 QAIVTGEGPVENWLYHLQDPSAHNGLTAL 115
>CB21_SOYBN (P12471) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) (Fragment) Length = 245 Score = 36.6 bits (83), Expect = 0.015 Identities = 15/24 (62%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL HL++P NN Sbjct: 210 QAIVTGKGPLENLADHLAEPVNNN 233
>CB23_ORYSA (P27519) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 263 Score = 36.2 bits (82), Expect = 0.020 Identities = 15/24 (62%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL H++DP NN Sbjct: 228 QAIVTGKGPIENLFDHVADPVANN 251
>CB26_PETSP (P12062) Chlorophyll a-b binding protein 37, chloroplast precursor| (LHCII type I CAB-37) (LHCP) Length = 265 Score = 36.2 bits (82), Expect = 0.020 Identities = 15/24 (62%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL H++DP NN Sbjct: 230 QAIVTGKGPIENLYDHVADPVANN 253
>CB23_TOBAC (P27494) Chlorophyll a-b binding protein 36, chloroplast precursor| (LHCII type I CAB-36) (LHCP) Length = 265 Score = 36.2 bits (82), Expect = 0.020 Identities = 15/24 (62%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL H++DP NN Sbjct: 230 QAIVTGKGPIENLFDHVADPVANN 253
>CB23_POLMU (P15195) Chlorophyll a-b binding protein type 1 member F3,| chloroplast precursor (DE Chlorophyll a-b binding protein type I F3) (CAB-F3) (LHCP) Length = 265 Score = 36.2 bits (82), Expect = 0.020 Identities = 16/24 (66%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL HL+DP NN Sbjct: 230 QAIVTGKGPIENLSDHLADPAVNN 253
>CB21_PEA (P04159) Chlorophyll a-b binding protein AB96 (LHCII type I| CAB-AB96) (LHCP) (Major 15) (Fragment) Length = 228 Score = 36.2 bits (82), Expect = 0.020 Identities = 15/23 (65%), Positives = 17/23 (73%) Frame = -2 Query: 374 AYVTGEGPFENLCAHLSDPFGNN 306 A VTG+GP ENL HL+DP NN Sbjct: 194 AIVTGKGPLENLADHLADPVNNN 216
>CB23_LYCES (P27489) Chlorophyll a-b binding protein 13, chloroplast precursor| (LHCII type III CAB-13) Length = 265 Score = 35.4 bits (80), Expect = 0.034 Identities = 15/24 (62%), Positives = 17/24 (70%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL HL +P NN Sbjct: 230 QAIVTGKGPLENLLDHLDNPVANN 253
>CB2_CHLMO (P22686) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 256 Score = 35.4 bits (80), Expect = 0.034 Identities = 15/24 (62%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP +NL HL+DP NN Sbjct: 221 QAIVTGKGPIQNLADHLADPGTNN 244
>CB23_SOYBN (P09756) Chlorophyll a-b binding protein 3, chloroplast precursor| (LHCII type I CAB-3) (LHCP) Length = 263 Score = 35.4 bits (80), Expect = 0.034 Identities = 15/24 (62%), Positives = 17/24 (70%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL HL+ P NN Sbjct: 228 QAIVTGKGPLENLADHLAGPVNNN 251
>CB21_WHEAT (P04784) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 266 Score = 35.4 bits (80), Expect = 0.034 Identities = 14/24 (58%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP E+L H++DP NN Sbjct: 231 QAIVTGKGPLEDLADHIADPVNNN 254
>CB23_PEA (P27520) Chlorophyll a-b binding protein 215, chloroplast precursor| (LHCII type II CAB-215) (LHCP) Length = 265 Score = 35.0 bits (79), Expect = 0.044 Identities = 14/24 (58%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP +NL H++DP NN Sbjct: 230 QAIVTGKGPIQNLYDHVADPVANN 253
>CB2_DUNSA (P20865) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 273 Score = 34.7 bits (78), Expect = 0.058 Identities = 15/24 (62%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP ENL HL++P NN Sbjct: 239 QAIVTGKGPIENLTDHLANPAENN 262
>CB11_LYCES (P12360) Chlorophyll a-b binding protein 6A, chloroplast precursor| (LHCI type I CAB-6A) (Light-harvesting complex I 26 kDa protein) Length = 246 Score = 34.3 bits (77), Expect = 0.075 Identities = 15/29 (51%), Positives = 19/29 (65%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNNLLTVI 291 Q+ G GP ENL HL+DP+ NN+ VI Sbjct: 210 QSAYLGTGPLENLATHLADPWHNNIGDVI 238
>LH18_EUGGR (P08976) Light-harvesting complex I LH38 proteins precursor| [Contains: LH38 protein 1; LH38 protein 2; LH38 protein 3] (Fragment) Length = 530 Score = 33.5 bits (75), Expect = 0.13 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 5/39 (12%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNNLLTVI-----SGAAE 276 Q TGE P NL AHL++P G N+ T + SGA E Sbjct: 331 QYLATGESPLANLSAHLANPIGANITTNLAMFASSGAKE 369
>LH15_EUGGR (P08975) Light-harvesting complex I LH35 proteins precursor| [Contains: LH35 protein 1; LH35 protein 2] (Fragment) Length = 331 Score = 32.7 bits (73), Expect = 0.22 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNNLLTVIS 288 Q TGE P NL AH ++P G N+ T ++ Sbjct: 302 QYLATGESPLANLAAHFANPVGANITTTLA 331
>CB2_DUNTE (P27517) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 253 Score = 32.3 bits (72), Expect = 0.29 Identities = 14/23 (60%), Positives = 17/23 (73%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGN 309 QA VTG+GP +NL HL+DP N Sbjct: 218 QAIVTGKGPVQNLTDHLADPTVN 240
>CB2_CHLRE (P14273) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 253 Score = 32.0 bits (71), Expect = 0.37 Identities = 14/24 (58%), Positives = 18/24 (75%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNN 306 QA VTG+GP +NL HL++P NN Sbjct: 218 QAIVTGKGPVQNLDDHLANPTVNN 241
>CB4A_ARATH (Q07473) Chlorophyll a-b binding protein CP29.1, chloroplast| precursor (LHCII protein 4.1) (LHCB4.1) Length = 290 Score = 32.0 bits (71), Expect = 0.37 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNNLLTVISGA 282 QA TG+GP N HLSDP ++ S + Sbjct: 259 QAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 290
>CB4B_ARATH (Q9XF88) Chlorophyll a-b binding protein CP29.2, chloroplast| precursor (LHCII protein 4.2) (LHCB4.2) Length = 287 Score = 32.0 bits (71), Expect = 0.37 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDPFGNNLLTVISGA 282 QA TG+GP N HLSDP ++ S + Sbjct: 256 QAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 287
>DUS10_MOUSE (Q9ESS0) Dual specificity protein phosphatase 10 (EC 3.1.3.48) (EC| 3.1.3.16) (Mitogen-activated protein kinase phosphatase 5) (MAP kinase phosphatase 5) (MKP-5) Length = 483 Score = 29.6 bits (65), Expect = 1.9 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +3 Query: 177 STSCCIARTHAAEHQQPTAADGQSTASSQAG 269 STSCC T+ +HQ T A TA++ G Sbjct: 77 STSCCTVATYDKDHQAQTQAIAAGTATTAIG 107
>USE1_HUMAN (Q9NZ43) USE1-like protein (Hematopoietic stem/progenitor cells| protein MDS032) (Putative MAPK-activating protein PM26) (Protein p31) Length = 259 Score = 29.6 bits (65), Expect = 1.9 Identities = 19/51 (37%), Positives = 25/51 (49%) Frame = +1 Query: 154 LFPGKIHTAHHAASHARMQLSINSRRRRTGNQRPAHRLGTLSAAPEMTVSR 306 L PG++ T A + + SR R T R + LGT SA PEM V + Sbjct: 90 LAPGRVPTTARERVPATKTVHLQSRARYTSEMR-SELLGTDSAEPEMDVRK 139
>NMDE1_RAT (Q00959) Glutamate [NMDA] receptor subunit epsilon 1 precursor| (N-methyl D-aspartate receptor subtype 2A) (NR2A) (NMDAR2A) Length = 1464 Score = 29.3 bits (64), Expect = 2.4 Identities = 11/34 (32%), Positives = 21/34 (61%) Frame = +2 Query: 83 SEIRTVMFLLPLIIYTYGTFVLSYFSPVKFTQHI 184 + + +MF++ LI+ FV YFSPV + +++ Sbjct: 555 ASVWVMMFVMLLIVSAIAVFVFEYFSPVGYNRNL 588
>NMDE1_PANTR (Q5IS45) Glutamate [NMDA] receptor subunit epsilon 1 precursor| (N-methyl D-aspartate receptor subtype 2A) (NR2A) (NMDAR2A) Length = 1464 Score = 29.3 bits (64), Expect = 2.4 Identities = 11/34 (32%), Positives = 21/34 (61%) Frame = +2 Query: 83 SEIRTVMFLLPLIIYTYGTFVLSYFSPVKFTQHI 184 + + +MF++ LI+ FV YFSPV + +++ Sbjct: 555 ASVWVMMFVMLLIVSAIAVFVFEYFSPVGYNRNL 588
>NMDE1_MOUSE (P35436) Glutamate [NMDA] receptor subunit epsilon 1 precursor| (N-methyl D-aspartate receptor subtype 2A) (NR2A) (NMDAR2A) Length = 1464 Score = 29.3 bits (64), Expect = 2.4 Identities = 11/34 (32%), Positives = 21/34 (61%) Frame = +2 Query: 83 SEIRTVMFLLPLIIYTYGTFVLSYFSPVKFTQHI 184 + + +MF++ LI+ FV YFSPV + +++ Sbjct: 555 ASVWVMMFVMLLIVSAIAVFVFEYFSPVGYNRNL 588
>NMDE1_HUMAN (Q12879) Glutamate [NMDA] receptor subunit epsilon 1 precursor| (N-methyl D-aspartate receptor subtype 2A) (NR2A) (NMDAR2A) (hNR2A) Length = 1464 Score = 29.3 bits (64), Expect = 2.4 Identities = 11/34 (32%), Positives = 21/34 (61%) Frame = +2 Query: 83 SEIRTVMFLLPLIIYTYGTFVLSYFSPVKFTQHI 184 + + +MF++ LI+ FV YFSPV + +++ Sbjct: 555 ASVWVMMFVMLLIVSAIAVFVFEYFSPVGYNRNL 588
>CB12_PETHY (P13869) Chlorophyll a-b binding protein, chloroplast precursor| (LHCI type II CAB) Length = 270 Score = 29.3 bits (64), Expect = 2.4 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDP 318 Q TG GP +NL AHL+DP Sbjct: 239 QHIYTGTGPIDNLFAHLADP 258
>CB12_LYCES (P10708) Chlorophyll a-b binding protein 7, chloroplast precursor| (LHCI type II CAB-7) Length = 270 Score = 29.3 bits (64), Expect = 2.4 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = -2 Query: 377 QAYVTGEGPFENLCAHLSDP 318 Q TG GP +NL AHL+DP Sbjct: 239 QHIYTGTGPIDNLFAHLADP 258
>NMDE2_RAT (Q00960) Glutamate [NMDA] receptor subunit epsilon 2 precursor| (N-methyl D-aspartate receptor subtype 2B) (NR2B) (NMDAR2B) Length = 1482 Score = 28.9 bits (63), Expect = 3.2 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = +2 Query: 83 SEIRTVMFLLPLIIYTYGTFVLSYFSPVKFTQ 178 +++ +MF++ LI+ FV YFSPV + + Sbjct: 556 ADVWVMMFVMLLIVSAVAVFVFEYFSPVGYNR 587
>NMDE2_MOUSE (Q01097) Glutamate [NMDA] receptor subunit epsilon 2 precursor| (N-methyl D-aspartate receptor subtype 2B) (NR2B) (NMDAR2B) Length = 1482 Score = 28.9 bits (63), Expect = 3.2 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = +2 Query: 83 SEIRTVMFLLPLIIYTYGTFVLSYFSPVKFTQ 178 +++ +MF++ LI+ FV YFSPV + + Sbjct: 556 ADVWVMMFVMLLIVSAVAVFVFEYFSPVGYNR 587
>NMDE2_HUMAN (Q13224) Glutamate [NMDA] receptor subunit epsilon 2 precursor| (N-methyl D-aspartate receptor subtype 2B) (NR2B) (NMDAR2B) (N-methyl-D-aspartate receptor subunit 3) (NR3) (hNR3) Length = 1484 Score = 28.9 bits (63), Expect = 3.2 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = +2 Query: 83 SEIRTVMFLLPLIIYTYGTFVLSYFSPVKFTQ 178 +++ +MF++ LI+ FV YFSPV + + Sbjct: 556 ADVWVMMFVMLLIVSAVAVFVFEYFSPVGYNR 587
>NMDE3_RAT (Q00961) Glutamate [NMDA] receptor subunit epsilon 3 precursor| (N-methyl D-aspartate receptor subtype 2C) (NR2C) (NMDAR2C) Length = 1237 Score = 27.7 bits (60), Expect = 7.0 Identities = 10/29 (34%), Positives = 18/29 (62%) Frame = +2 Query: 98 VMFLLPLIIYTYGTFVLSYFSPVKFTQHI 184 +MF++ L + F+ YFSPV + Q++ Sbjct: 558 MMFVMCLTVVAITVFMFEYFSPVSYNQNL 586
>MURD_XYLFA (Q9PEB0) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC| 6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase) (D-glutamic acid-adding enzyme) Length = 468 Score = 27.7 bits (60), Expect = 7.0 Identities = 18/53 (33%), Positives = 23/53 (43%) Frame = +1 Query: 184 HAASHARMQLSINSRRRRTGNQRPAHRLGTLSAAPEMTVSRLLPKGSLRWAHR 342 H H Q IN + RP R+ L+AA S LP+ LRW +R Sbjct: 198 HLDWHGSEQRYINDKLSLVTVTRP--RIALLNAADPRLASLALPQSDLRWFNR 248
>GLMS_PYRFU (Q8U4D1) Glucosamine--fructose-6-phosphate aminotransferase| [isomerizing] (EC 2.6.1.16) (Hexosephosphate aminotransferase) (D-fructose-6-phosphate amidotransferase) (GFAT) (L-glutamine-D-fructose-6-phosphate amidotransferase) (Glucosamine-6-ph Length = 597 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = +2 Query: 71 PKLPSEIRTVMFLLPLIIYTYGTFVLSYFSP 163 PKLP EI +++++PL + Y VL +P Sbjct: 554 PKLPEEITPIVYIVPLQLLAYHLAVLRGNNP 584
>DCNL4_BRARE (Q5RHX6) DCN1-like protein 4 (Defective in cullin neddylation| protein 1-like protein 4) (DCUN1 domain-containing protein 4) Length = 280 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 8/50 (16%) Frame = +3 Query: 138 HSYSHTFPR*N--------SHSTSCCIARTHAAEHQQPTAADGQSTASSQ 263 H HT R N SH T+CC + ++PTA D S S+ Sbjct: 21 HKIYHTLHRLNLTEDVGPESHGTACCSRAMPPRKKRRPTAGDDLSAKKSR 70
>NMDE3_HUMAN (Q14957) Glutamate [NMDA] receptor subunit epsilon 3 precursor| (N-methyl D-aspartate receptor subtype 2C) (NR2C) (NMDAR2C) Length = 1233 Score = 27.7 bits (60), Expect = 7.0 Identities = 10/29 (34%), Positives = 18/29 (62%) Frame = +2 Query: 98 VMFLLPLIIYTYGTFVLSYFSPVKFTQHI 184 +MF++ L + F+ YFSPV + Q++ Sbjct: 558 MMFVMCLTVVAITVFMFEYFSPVSYNQNL 586
>NMDE3_MOUSE (Q01098) Glutamate [NMDA] receptor subunit epsilon 3 precursor| (N-methyl D-aspartate receptor subtype 2C) (NR2C) (NMDAR2C) Length = 1239 Score = 27.7 bits (60), Expect = 7.0 Identities = 10/29 (34%), Positives = 18/29 (62%) Frame = +2 Query: 98 VMFLLPLIIYTYGTFVLSYFSPVKFTQHI 184 +MF++ L + F+ YFSPV + Q++ Sbjct: 558 MMFVMCLTVVAITVFMFEYFSPVSYNQNL 586
>CRE1_NEUCR (O59958) DNA-binding protein cre-1 (Carbon catabolite repressor)| Length = 430 Score = 27.3 bits (59), Expect = 9.2 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 10/55 (18%) Frame = +1 Query: 133 RHIRT-------LILFPG---KIHTAHHAASHARMQLSINSRRRRTGNQRPAHRL 267 RHIRT FPG K + H+R+ + NSRR G Q+ H L Sbjct: 95 RHIRTHTGEKPHACQFPGCSKKFSRSDELTRHSRIHSNPNSRRGNKGQQQQQHPL 149 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,211,154 Number of Sequences: 219361 Number of extensions: 933537 Number of successful extensions: 2504 Number of sequences better than 10.0: 89 Number of HSP's better than 10.0 without gapping: 2452 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2504 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 1402043640 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
