ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet122f02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DUFFY_MOUSE (Q9QUI6) Duffy antigen/chemokine receptor (CD234 ant... 32 0.95
2NAPG_HAEIN (P44652) Ferredoxin-type protein napG homolog 30 2.1
3MURD_SYNEL (Q8DMN8) UDP-N-acetylmuramoylalanine--D-glutamate lig... 30 2.1
4KLKB1_MOUSE (P26262) Plasma kallikrein precursor (EC 3.4.21.34) ... 30 2.8

>DUFFY_MOUSE (Q9QUI6) Duffy antigen/chemokine receptor (CD234 antigen)|
          Length = 334

 Score = 31.6 bits (70), Expect = 0.95
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -2

Query: 189 SIYRGCLMSLGIWPWQGATYQRALAMTTLCGCFFCPDPR 73
           S +   L +LG W W    Y  A A   L GC+ C +PR
Sbjct: 120 SAHSTALCNLGYWVW----YTSAFAQALLIGCYACLNPR 154



to top

>NAPG_HAEIN (P44652) Ferredoxin-type protein napG homolog|
          Length = 279

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +3

Query: 123 PFDMLHLAKARSPGTSGNPYRCCR 194
           P+DMLHLA   SP  +G PY   R
Sbjct: 83  PYDMLHLASLLSPVEAGTPYFIAR 106



to top

>MURD_SYNEL (Q8DMN8) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC|
           6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase) (D-glutamic acid-adding enzyme)
          Length = 454

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 436 NLVPELWDISTSGFNSIASSICRCVPVVEA*LWFFDPPL 320
           N  P+ W IST G  ++   I + + + E  +WF D PL
Sbjct: 231 NRWPQAWWISTQGAIALPKGIAQGIYIAEDQVWFQDQPL 269



to top

>KLKB1_MOUSE (P26262) Plasma kallikrein precursor (EC 3.4.21.34) (Plasma|
           prekallikrein) (Kininogenin) (Fletcher factor)
           [Contains: Plasma kallikrein heavy chain; Plasma
           kallikrein light chain]
          Length = 638

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 186 IYRGCLMSLGIWPWQGATYQRALAMTTLCG 97
           I  G   SLG WPWQ +   + ++ T LCG
Sbjct: 391 IVGGTNASLGEWPWQVSLQVKLVSQTHLCG 420


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,236,745
Number of Sequences: 219361
Number of extensions: 1166373
Number of successful extensions: 3243
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3242
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top