ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet122c09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ARCD_LACSK (O53092) Arginine/ornithine antiporter 28 8.3
2VTDB_RABIT (P53789) Vitamin D-binding protein precursor (DBP) (G... 28 8.3

>ARCD_LACSK (O53092) Arginine/ornithine antiporter|
          Length = 475

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 403 LWLCFSMWIPPVAFQGESRQVDGRKH 326
           L LCF  +IP + F G +R+ +G +H
Sbjct: 419 LLLCFIAYIPGIYFYGRARKNNGHQH 444



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>VTDB_RABIT (P53789) Vitamin D-binding protein precursor (DBP) (Group-specific|
           component) (Gc-globulin) (VDB)
          Length = 476

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 325 CVSVRPPACFLPEKLLVESTSRSTTKGN 408
           C S  P  CFL E+L ++  S  TT  N
Sbjct: 190 CTSASPTVCFLKERLQIKHLSLLTTLSN 217


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,807,129
Number of Sequences: 219361
Number of extensions: 860114
Number of successful extensions: 2311
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2311
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2169600302
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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