ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet122b02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_462673.1| Oryza sativa (japonica cultivar-group), predic... 208 9e-51
2ref|XM_473728.1| Oryza sativa (japonica cultivar-group), predic... 208 9e-51
3emb|AL731579.4|OSJN00225 Oryza sativa genomic DNA, chromosome 4,... 208 9e-51
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 208 9e-51
5dbj|AK067781.1| Oryza sativa (japonica cultivar-group) cDNA clon... 208 9e-51
6emb|AL607004.4|OSJN00129 Oryza sativa genomic DNA, chromosome 4,... 208 9e-51
7gb|AC107830.10| Mus musculus chromosome 16, clone RP23-230L20, c... 44 0.30
8gb|AC167658.2| Mus musculus chromosome 1, clone wi1-1370B21, com... 42 1.2
9gb|AC158968.3| Mus musculus chromosome 1, clone RP23-411D16, com... 42 1.2
10dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 42 1.2
11gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome 40 4.7
12gb|AY060839.1| Drosophila melanogaster GM02002 full insert cDNA 40 4.7
13gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 40 4.7
14emb|AL139035.27| Human DNA sequence from clone RP11-214F16 on ch... 40 4.7
15gb|AF052225.1| Escherichia coli hemolysin (hlyE) and insertion s... 40 4.7
16emb|AJ272039.1|SPN272039 Streptococcus pneumoniae lytD gene for ... 40 4.7
17gb|AC093335.7| Homo sapiens chromosome 18, clone RP11-850O21, co... 40 4.7
18gb|AE008459.1|AE008459 Streptococcus pneumoniae R6 section 75 of... 40 4.7
19gb|AC108775.12| Mus musculus chromosome 1, clone RP23-331M15, co... 40 4.7
20gb|AC125437.6| Homo sapiens chromosome 18, clone CTD-2286N8, com... 40 4.7
21gb|AE005672.2| Streptococcus pneumoniae TIGR4, complete genome 40 4.7
22emb|BX465837.11| Zebrafish DNA sequence from clone DKEY-27C15 in... 40 4.7
23gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 4.7
24gb|AC076974.33| Mus musculus strain C57BL/6J chromosome 8 clone ... 40 4.7
25dbj|AP004520.1| Lotus japonicus genomic DNA, chromosome 5, clone... 40 4.7 
>ref|XM_462673.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1218

 Score =  208 bits (105), Expect = 9e-51
 Identities = 249/297 (83%)
 Strand = Plus / Minus

                                                                        
Query: 41   aactgttaacaaaatggtatttggattctacatggctctcaccctcccacaaaaaggctc 100
            |||||||||||||||||||||||||||||||||| |||||| | ||||||||||||| ||
Sbjct: 1216 aactgttaacaaaatggtatttggattctacatgactctcagcttcccacaaaaaggatc 1157

                                                                        
Query: 101  caaaaccagccgcctccaggacaagatgtgtgagctctgtaaacgtaagcgttacagttt 160
            ||||| |||| |||||||  |||||||| ||||| ||| | || || |  ||||   |||
Sbjct: 1156 caaaagcagctgcctccaaaacaagatgggtgagttctatgaaagttattgttatcattt 1097

                                                                        
Query: 161  taccatctttagcattaacagagccatcatccagcactttgatatccggccgaccaaaca 220
             |||||| || ||||| |||||||||||||| |  ||||| ||||| ||||| |||||||
Sbjct: 1096 gaccatcctttgcattgacagagccatcatctaagactttaatatctggccgtccaaaca 1037

                                                                        
Query: 221  aagcctgcgtttgcttctctatcagcgagaccgattccttcgacctgatggtagcgtatc 280
            | ||||| ||||||||||||||||| ||||| |  || || || ||||| ||||| || |
Sbjct: 1036 acgcctgtgtttgcttctctatcagtgagacggcctcttttgatctgatagtagcatacc 977

                                                                     
Query: 281  tttgcaacgtatcagcgtccagccgcgagacgtaggacctcagcttgtttgggtttg 337
            |||||||||||||||| ||||  || || || |||||||||||||||||||| ||||
Sbjct: 976  tttgcaacgtatcagcatccaagcgtgaaacataggacctcagcttgtttggatttg 920
to top
>ref|XM_473728.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1218

 Score =  208 bits (105), Expect = 9e-51
 Identities = 249/297 (83%)
 Strand = Plus / Minus

                                                                        
Query: 41   aactgttaacaaaatggtatttggattctacatggctctcaccctcccacaaaaaggctc 100
            |||||||||||||||||||||||||||||||||| |||||| | ||||||||||||| ||
Sbjct: 1216 aactgttaacaaaatggtatttggattctacatgactctcagcttcccacaaaaaggatc 1157

                                                                        
Query: 101  caaaaccagccgcctccaggacaagatgtgtgagctctgtaaacgtaagcgttacagttt 160
            ||||| |||| |||||||  |||||||| ||||| ||| | || || |  ||||   |||
Sbjct: 1156 caaaagcagctgcctccaaaacaagatgggtgagttctatgaaagttattgttatcattt 1097

                                                                        
Query: 161  taccatctttagcattaacagagccatcatccagcactttgatatccggccgaccaaaca 220
             |||||| || ||||| |||||||||||||| |  ||||| ||||| ||||| |||||||
Sbjct: 1096 gaccatcctttgcattgacagagccatcatctaagactttaatatctggccgtccaaaca 1037

                                                                        
Query: 221  aagcctgcgtttgcttctctatcagcgagaccgattccttcgacctgatggtagcgtatc 280
            | ||||| ||||||||||||||||| ||||| |  || || || ||||| ||||| || |
Sbjct: 1036 acgcctgtgtttgcttctctatcagtgagacggcctcttttgatctgatagtagcatacc 977

                                                                     
Query: 281  tttgcaacgtatcagcgtccagccgcgagacgtaggacctcagcttgtttgggtttg 337
            |||||||||||||||| ||||  || || || |||||||||||||||||||| ||||
Sbjct: 976  tttgcaacgtatcagcatccaagcgtgaaacataggacctcagcttgtttggatttg 920
to top
>emb|AL731579.4|OSJN00225 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0006A01,
             complete sequence
          Length = 143157

 Score =  208 bits (105), Expect = 9e-51
 Identities = 249/297 (83%)
 Strand = Plus / Plus

                                                                         
Query: 41    aactgttaacaaaatggtatttggattctacatggctctcaccctcccacaaaaaggctc 100
             |||||||||||||||||||||||||||||||||| |||||| | ||||||||||||| ||
Sbjct: 90639 aactgttaacaaaatggtatttggattctacatgactctcagcttcccacaaaaaggatc 90698

                                                                         
Query: 101   caaaaccagccgcctccaggacaagatgtgtgagctctgtaaacgtaagcgttacagttt 160
             ||||| |||| |||||||  |||||||| ||||| ||| | || || |  ||||   |||
Sbjct: 90699 caaaagcagctgcctccaaaacaagatgggtgagttctatgaaagttattgttatcattt 90758

                                                                         
Query: 161   taccatctttagcattaacagagccatcatccagcactttgatatccggccgaccaaaca 220
              |||||| || ||||| |||||||||||||| |  ||||| ||||| ||||| |||||||
Sbjct: 90759 gaccatcctttgcattgacagagccatcatctaagactttaatatctggccgtccaaaca 90818

                                                                         
Query: 221   aagcctgcgtttgcttctctatcagcgagaccgattccttcgacctgatggtagcgtatc 280
             | ||||| ||||||||||||||||| ||||| |  || || || ||||| ||||| || |
Sbjct: 90819 acgcctgtgtttgcttctctatcagtgagacggcctcttttgatctgatagtagcatacc 90878

                                                                      
Query: 281   tttgcaacgtatcagcgtccagccgcgagacgtaggacctcagcttgtttgggtttg 337
             |||||||||||||||| ||||  || || || |||||||||||||||||||| ||||
Sbjct: 90879 tttgcaacgtatcagcatccaagcgtgaaacataggacctcagcttgtttggatttg 90935
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  208 bits (105), Expect = 9e-51
 Identities = 249/297 (83%)
 Strand = Plus / Plus

                                                                            
Query: 41       aactgttaacaaaatggtatttggattctacatggctctcaccctcccacaaaaaggctc 100
                |||||||||||||||||||||||||||||||||| |||||| | ||||||||||||| ||
Sbjct: 30111660 aactgttaacaaaatggtatttggattctacatgactctcagcttcccacaaaaaggatc 30111719

                                                                            
Query: 101      caaaaccagccgcctccaggacaagatgtgtgagctctgtaaacgtaagcgttacagttt 160
                ||||| |||| |||||||  |||||||| ||||| ||| | || || |  ||||   |||
Sbjct: 30111720 caaaagcagctgcctccaaaacaagatgggtgagttctatgaaagttattgttatcattt 30111779

                                                                            
Query: 161      taccatctttagcattaacagagccatcatccagcactttgatatccggccgaccaaaca 220
                 |||||| || ||||| |||||||||||||| |  ||||| ||||| ||||| |||||||
Sbjct: 30111780 gaccatcctttgcattgacagagccatcatctaagactttaatatctggccgtccaaaca 30111839

                                                                            
Query: 221      aagcctgcgtttgcttctctatcagcgagaccgattccttcgacctgatggtagcgtatc 280
                | ||||| ||||||||||||||||| ||||| |  || || || ||||| ||||| || |
Sbjct: 30111840 acgcctgtgtttgcttctctatcagtgagacggcctcttttgatctgatagtagcatacc 30111899

                                                                         
Query: 281      tttgcaacgtatcagcgtccagccgcgagacgtaggacctcagcttgtttgggtttg 337
                |||||||||||||||| ||||  || || || |||||||||||||||||||| ||||
Sbjct: 30111900 tttgcaacgtatcagcatccaagcgtgaaacataggacctcagcttgtttggatttg 30111956



 Score =  208 bits (105), Expect = 9e-51
 Identities = 249/297 (83%)
 Strand = Plus / Plus

                                                                            
Query: 41       aactgttaacaaaatggtatttggattctacatggctctcaccctcccacaaaaaggctc 100
                |||||||||||||||||||||||||||||||||| |||||| | ||||||||||||| ||
Sbjct: 30050957 aactgttaacaaaatggtatttggattctacatgactctcagcttcccacaaaaaggatc 30051016

                                                                            
Query: 101      caaaaccagccgcctccaggacaagatgtgtgagctctgtaaacgtaagcgttacagttt 160
                ||||| |||| |||||||  |||||||| ||||| ||| | || || |  ||||   |||
Sbjct: 30051017 caaaagcagctgcctccaaaacaagatgggtgagttctatgaaagttattgttatcattt 30051076

                                                                            
Query: 161      taccatctttagcattaacagagccatcatccagcactttgatatccggccgaccaaaca 220
                 |||||| || ||||| |||||||||||||| |  ||||| ||||| ||||| |||||||
Sbjct: 30051077 gaccatcctttgcattgacagagccatcatctaagactttaatatctggccgtccaaaca 30051136

                                                                            
Query: 221      aagcctgcgtttgcttctctatcagcgagaccgattccttcgacctgatggtagcgtatc 280
                | ||||| ||||||||||||||||| ||||| |  || || || ||||| ||||| || |
Sbjct: 30051137 acgcctgtgtttgcttctctatcagtgagacggcctcttttgatctgatagtagcatacc 30051196

                                                                         
Query: 281      tttgcaacgtatcagcgtccagccgcgagacgtaggacctcagcttgtttgggtttg 337
                |||||||||||||||| ||||  || || || |||||||||||||||||||| ||||
Sbjct: 30051197 tttgcaacgtatcagcatccaagcgtgaaacataggacctcagcttgtttggatttg 30051253
to top
>dbj|AK067781.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013120J11, full
            insert sequence
          Length = 1436

 Score =  208 bits (105), Expect = 9e-51
 Identities = 249/297 (83%)
 Strand = Plus / Minus

                                                                        
Query: 41   aactgttaacaaaatggtatttggattctacatggctctcaccctcccacaaaaaggctc 100
            |||||||||||||||||||||||||||||||||| |||||| | ||||||||||||| ||
Sbjct: 1303 aactgttaacaaaatggtatttggattctacatgactctcagcttcccacaaaaaggatc 1244

                                                                        
Query: 101  caaaaccagccgcctccaggacaagatgtgtgagctctgtaaacgtaagcgttacagttt 160
            ||||| |||| |||||||  |||||||| ||||| ||| | || || |  ||||   |||
Sbjct: 1243 caaaagcagctgcctccaaaacaagatgggtgagttctatgaaagttattgttatcattt 1184

                                                                        
Query: 161  taccatctttagcattaacagagccatcatccagcactttgatatccggccgaccaaaca 220
             |||||| || ||||| |||||||||||||| |  ||||| ||||| ||||| |||||||
Sbjct: 1183 gaccatcctttgcattgacagagccatcatctaagactttaatatctggccgtccaaaca 1124

                                                                        
Query: 221  aagcctgcgtttgcttctctatcagcgagaccgattccttcgacctgatggtagcgtatc 280
            | ||||| ||||||||||||||||| ||||| |  || || || ||||| ||||| || |
Sbjct: 1123 acgcctgtgtttgcttctctatcagtgagacggcctcttttgatctgatagtagcatacc 1064

                                                                     
Query: 281  tttgcaacgtatcagcgtccagccgcgagacgtaggacctcagcttgtttgggtttg 337
            |||||||||||||||| ||||  || || || |||||||||||||||||||| ||||
Sbjct: 1063 tttgcaacgtatcagcatccaagcgtgaaacataggacctcagcttgtttggatttg 1007
to top
>emb|AL607004.4|OSJN00129 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNba0093F12,
            complete sequence
          Length = 186142

 Score =  208 bits (105), Expect = 9e-51
 Identities = 249/297 (83%)
 Strand = Plus / Plus

                                                                        
Query: 41   aactgttaacaaaatggtatttggattctacatggctctcaccctcccacaaaaaggctc 100
            |||||||||||||||||||||||||||||||||| |||||| | ||||||||||||| ||
Sbjct: 8071 aactgttaacaaaatggtatttggattctacatgactctcagcttcccacaaaaaggatc 8130

                                                                        
Query: 101  caaaaccagccgcctccaggacaagatgtgtgagctctgtaaacgtaagcgttacagttt 160
            ||||| |||| |||||||  |||||||| ||||| ||| | || || |  ||||   |||
Sbjct: 8131 caaaagcagctgcctccaaaacaagatgggtgagttctatgaaagttattgttatcattt 8190

                                                                        
Query: 161  taccatctttagcattaacagagccatcatccagcactttgatatccggccgaccaaaca 220
             |||||| || ||||| |||||||||||||| |  ||||| ||||| ||||| |||||||
Sbjct: 8191 gaccatcctttgcattgacagagccatcatctaagactttaatatctggccgtccaaaca 8250

                                                                        
Query: 221  aagcctgcgtttgcttctctatcagcgagaccgattccttcgacctgatggtagcgtatc 280
            | ||||| ||||||||||||||||| ||||| |  || || || ||||| ||||| || |
Sbjct: 8251 acgcctgtgtttgcttctctatcagtgagacggcctcttttgatctgatagtagcatacc 8310

                                                                     
Query: 281  tttgcaacgtatcagcgtccagccgcgagacgtaggacctcagcttgtttgggtttg 337
            |||||||||||||||| ||||  || || || |||||||||||||||||||| ||||
Sbjct: 8311 tttgcaacgtatcagcatccaagcgtgaaacataggacctcagcttgtttggatttg 8367
to top
>gb|AC107830.10| Mus musculus chromosome 16, clone RP23-230L20, complete sequence
          Length = 175615

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 24    tatcaaaatgcacaatcaactg 45
             ||||||||||||||||||||||
Sbjct: 67691 tatcaaaatgcacaatcaactg 67712
to top
>gb|AC167658.2| Mus musculus chromosome 1, clone wi1-1370B21, complete sequence
          Length = 39876

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 48    aacaaaatggtatttggattc 68
             |||||||||||||||||||||
Sbjct: 14921 aacaaaatggtatttggattc 14901
to top
>gb|AC158968.3| Mus musculus chromosome 1, clone RP23-411D16, complete sequence
          Length = 183663

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 48   aacaaaatggtatttggattc 68
            |||||||||||||||||||||
Sbjct: 6537 aacaaaatggtatttggattc 6557
to top
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 298     tccagccgcgagacgtaggac 318
               |||||||||||||||||||||
Sbjct: 1534922 tccagccgcgagacgtaggac 1534902
to top
>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome
          Length = 2364842

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 246     cgagaccgattccttcgacctgat 269
               |||||||| |||||||||||||||
Sbjct: 1351078 cgagaccggttccttcgacctgat 1351055
to top
>gb|AY060839.1| Drosophila melanogaster GM02002 full insert cDNA
          Length = 2029

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 337 gtttcctcgtcttcctccac 356
           ||||||||||||||||||||
Sbjct: 120 gtttcctcgtcttcctccac 139
to top
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 101     caaaaccagccgcctccaggacaagatg 128
               |||||||||||| ||||||||| |||||
Sbjct: 2968866 caaaaccagccggctccaggaccagatg 2968839
to top
>emb|AL139035.27| Human DNA sequence from clone RP11-214F16 on chromosome 13 Contains the
             TM9SF2 gene for transmembrane 9 superfamily member 2
             (P76), three novel genes, a cofilin 1 (non-muscle) (CFL1)
             pseudogene, the 5' end of the CLYBL gene for citrate lyase
             beta like (CLB bA134O15.1) and two CpG islands, complete
             sequence
          Length = 157662

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 40    caactgttaacaaaatggtatttg 63
             |||||||||||| |||||||||||
Sbjct: 43784 caactgttaacacaatggtatttg 43761
to top
>gb|AF052225.1| Escherichia coli hemolysin (hlyE) and insertion sequence IS1F
           transposase (tnp) genes, complete cds; sigma factor
           (fecI) gene, partial cds; and insertion sequence IS1F
           unknown gene
          Length = 2344

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 184 ccatcatccagcactttgat 203
           ||||||||||||||||||||
Sbjct: 436 ccatcatccagcactttgat 417
to top
>emb|AJ272039.1|SPN272039 Streptococcus pneumoniae lytD gene for teichoic acid
            phosphorylcholine esterase
          Length = 2486

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 94   aaggctccaaaaccagccgc 113
            ||||||||||||||||||||
Sbjct: 2454 aaggctccaaaaccagccgc 2435
to top
>gb|AC093335.7| Homo sapiens chromosome 18, clone RP11-850O21, complete sequence
          Length = 105499

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 325   ttgtttgggtttgtttcctc 344
             ||||||||||||||||||||
Sbjct: 19651 ttgtttgggtttgtttcctc 19632
to top
>gb|AE008459.1|AE008459 Streptococcus pneumoniae R6 section 75 of 184 of the complete
           genome
          Length = 10334

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 94  aaggctccaaaaccagccgc 113
           ||||||||||||||||||||
Sbjct: 267 aaggctccaaaaccagccgc 248
to top
>gb|AC108775.12| Mus musculus chromosome 1, clone RP23-331M15, complete sequence
          Length = 188126

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 67     tctacatggctctcaccctc 86
              ||||||||||||||||||||
Sbjct: 131318 tctacatggctctcaccctc 131299
to top
>gb|AC125437.6| Homo sapiens chromosome 18, clone CTD-2286N8, complete sequence
          Length = 114688

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 325   ttgtttgggtttgtttcctc 344
             ||||||||||||||||||||
Sbjct: 70248 ttgtttgggtttgtttcctc 70229
to top
>gb|AE005672.2| Streptococcus pneumoniae TIGR4, complete genome
          Length = 2160842

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 94     aaggctccaaaaccagccgc 113
              ||||||||||||||||||||
Sbjct: 884347 aaggctccaaaaccagccgc 884328
to top
>emb|BX465837.11| Zebrafish DNA sequence from clone DKEY-27C15 in linkage group 19,
             complete sequence
          Length = 206154

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 325   ttgtttgggtttgtttcctc 344
             ||||||||||||||||||||
Sbjct: 93276 ttgtttgggtttgtttcctc 93257
to top
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 337     gtttcctcgtcttcctccac 356
               ||||||||||||||||||||
Sbjct: 4362347 gtttcctcgtcttcctccac 4362366
to top
>gb|AC076974.33| Mus musculus strain C57BL/6J chromosome 8 clone rp23-267j18, complete
             sequence
          Length = 211075

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 321   cagcttgtttgggtttgttt 340
             ||||||||||||||||||||
Sbjct: 92637 cagcttgtttgggtttgttt 92618
to top
>dbj|AP004520.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT05P01, TM0048,
              complete sequence
          Length = 110811

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 25     atcaaaatgcacaatcaactgttaacaa 52
              ||||||||| |||||||||||| |||||
Sbjct: 105094 atcaaaatgaacaatcaactgtgaacaa 105067


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,724,485
Number of Sequences: 3902068
Number of extensions: 3724485
Number of successful extensions: 58239
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58091
Number of HSP's gapped (non-prelim): 148
length of query: 356
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 334
effective length of database: 17,147,199,772
effective search space: 5727164723848
effective search space used: 5727164723848
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top