| Clone Name | rbaet120h06 |
|---|---|
| Clone Library Name | barley_pub |
>EXTN_MAIZE (P14918) Extensin precursor (Proline-rich glycoprotein)| Length = 267 Score = 32.0 bits (71), Expect = 0.39 Identities = 19/60 (31%), Positives = 25/60 (41%) Frame = +1 Query: 142 KDPKPNKSPTSYISKPRPFSLAQTNPKLRRGPIGPHNHQRPRCVDHPRVTTSSRSPAPGP 321 K P P +P +Y P+P + T P P P H P+ P T S + P P P Sbjct: 137 KPPTPKPTPPTYTPSPKPPTPKPTPPTYTPSP-KPPTHPTPKPTP-PTYTPSPKPPTPKP 194 Score = 30.0 bits (66), Expect = 1.5 Identities = 17/60 (28%), Positives = 22/60 (36%) Frame = +1 Query: 142 KDPKPNKSPTSYISKPRPFSLAQTNPKLRRGPIGPHNHQRPRCVDHPRVTTSSRSPAPGP 321 K P P +P +Y P+P + T P P P P T S + P P P Sbjct: 84 KPPTPKPTPPTYTPSPKPPTPKPTPPTYTPSPKPPATKPPTPKPTPPTYTPSPKPPTPKP 143 Score = 30.0 bits (66), Expect = 1.5 Identities = 17/60 (28%), Positives = 22/60 (36%) Frame = +1 Query: 142 KDPKPNKSPTSYISKPRPFSLAQTNPKLRRGPIGPHNHQRPRCVDHPRVTTSSRSPAPGP 321 K P P +P +Y P+P + T P P P P T S + P P P Sbjct: 47 KPPTPKPTPPTYTPSPKPPTPKPTPPTYTPSPKPPATKPPTPKPTPPTYTPSPKPPTPKP 106 Score = 27.3 bits (59), Expect = 9.6 Identities = 16/60 (26%), Positives = 22/60 (36%) Frame = +1 Query: 142 KDPKPNKSPTSYISKPRPFSLAQTNPKLRRGPIGPHNHQRPRCVDHPRVTTSSRSPAPGP 321 K P P +P +Y P+P + T P P P P T + + PA P Sbjct: 188 KPPTPKPTPPTYTPSPKPPTPKPTPPTYTPSPKPPATKPPTPKPTPPTYTPTPKPPATKP 247 Score = 27.3 bits (59), Expect = 9.6 Identities = 17/58 (29%), Positives = 22/58 (37%) Frame = +1 Query: 148 PKPNKSPTSYISKPRPFSLAQTNPKLRRGPIGPHNHQRPRCVDHPRVTTSSRSPAPGP 321 P P +P +Y P+P + T P P P P P T S + PA P Sbjct: 174 PTPKPTPPTYTPSPKPPTPKPTPPTYTPSPKPPTPKPTP-----PTYTPSPKPPATKP 226 Score = 27.3 bits (59), Expect = 9.6 Identities = 17/64 (26%), Positives = 25/64 (39%) Frame = +1 Query: 142 KDPKPNKSPTSYISKPRPFSLAQTNPKLRRGPIGPHNHQRPRCVDHPRVTTSSRSPAPGP 321 K P P +P +Y P+P + T P P P P+ T + +P+P P Sbjct: 121 KPPTPKPTPPTYTPSPKPPTPKPTPPTYTPSPKPP----------TPKPTPPTYTPSPKP 170 Query: 322 AGLP 333 P Sbjct: 171 PTHP 174 Score = 27.3 bits (59), Expect = 9.6 Identities = 17/60 (28%), Positives = 26/60 (43%) Frame = +1 Query: 142 KDPKPNKSPTSYISKPRPFSLAQTNPKLRRGPIGPHNHQRPRCVDHPRVTTSSRSPAPGP 321 K P P +P +Y P+P + PK P P P+ P+ T + +P+P P Sbjct: 26 KPPTPKPTPPTYTPSPKPPASKPPTPK----PTPPTYTPSPK-PPTPKPTPPTYTPSPKP 80
>COHA1_HUMAN (Q9UMD9) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen| 2) (180 kDa bullous pemphigoid antigen 2) Length = 1497 Score = 31.2 bits (69), Expect = 0.67 Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 4/70 (5%) Frame = +1 Query: 136 GLKDPKPNKSPTSYISKPR----PFSLAQTNPKLRRGPIGPHNHQRPRCVDHPRVTTSSR 303 G K + K P +P P ++ + K GP GP HQ PR R Sbjct: 707 GPKGDQGEKGPRGLTGEPGMRGLPGAVGEPGAKGAMGPAGPDGHQGPRGEQGLTGMPGIR 766 Query: 304 SPAPGPAGLP 333 P PGP+G P Sbjct: 767 GP-PGPSGDP 775
>IRX5_MOUSE (Q9JKQ4) Iroquois-class homeodomain protein IRX-5 (Iroquois| homeobox protein 5) (Homeodomain protein IRXB2) Length = 484 Score = 30.8 bits (68), Expect = 0.87 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 6/68 (8%) Frame = +1 Query: 148 PKPNKSPTSYISKPRPFSLAQ---TNPKLRRGPIGPHNHQRPRC---VDHPRVTTSSRSP 309 P P P + ++KP+ +SLA+ ++ K++ G G P C + + S SP Sbjct: 320 PPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGSEGSPCPPCPGPMGGQTLGGSRASP 379 Query: 310 APGPAGLP 333 AP PA P Sbjct: 380 APAPARSP 387
>PO2F1_MOUSE (P25425) POU domain, class 2, transcription factor 1| (Octamer-binding transcription factor 1) (Oct-1) (OTF-1) (NF-A1) Length = 770 Score = 30.8 bits (68), Expect = 0.87 Identities = 17/64 (26%), Positives = 24/64 (37%) Frame = +1 Query: 136 GLKDPKPNKSPTSYISKPRPFSLAQTNPKLRRGPIGPHNHQRPRCVDHPRVTTSSRSPAP 315 G D N + + IS P S A T+P L P + T ++ +P P Sbjct: 523 GTTDSTSNNNTATVISTAPPASSAVTSPSLSPSPSASASTSEASSASETNTTQTTSTPLP 582 Query: 316 GPAG 327 P G Sbjct: 583 SPLG 586
>HXA2_CHICK (Q08727) Homeobox protein Hox-A2| Length = 375 Score = 30.4 bits (67), Expect = 1.1 Identities = 19/49 (38%), Positives = 23/49 (46%) Frame = +1 Query: 187 PRPFSLAQTNPKLRRGPIGPHNHQRPRCVDHPRVTTSSRSPAPGPAGLP 333 P PF QT P L P H R P+ + +RS +PGPAG P Sbjct: 49 PPPFE--QTIPSLN-----PGGHPRHSGGGRPKASPRARSGSPGPAGAP 90
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 30.0 bits (66), Expect = 1.5 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 2/68 (2%) Frame = +1 Query: 142 KDPKPNKSPTSYISKPRPFSLAQTNPKLRRGPIGPHNHQRPRCVDHPRVTTSS--RSPAP 315 K+P P K+ K RP S +++ + R P +H RPR R + S R P+P Sbjct: 257 KEPSPEKNSKKEKEKTRPRSRSRSKSRSRTRSRSP-SHTRPRRRHRSRSRSYSPRRRPSP 315 Query: 316 GPAGLPRR 339 PRR Sbjct: 316 RRRPSPRR 323
>PTN23_MOUSE (Q6PB44) Tyrosine-protein phosphatase non-receptor type 23 (EC| 3.1.3.48) Length = 1692 Score = 29.3 bits (64), Expect = 2.5 Identities = 20/57 (35%), Positives = 27/57 (47%) Frame = +1 Query: 148 PKPNKSPTSYISKPRPFSLAQTNPKLRRGPIGPHNHQRPRCVDHPRVTTSSRSPAPG 318 P+P P S S+P+P Q P+ +R GP Q+P HP + S APG Sbjct: 997 PQPQPQPQSQ-SQPQP----QPQPQPQRPAFGPQPTQQPLPFQHPHLFPSQ---APG 1045
>HCN2_RAT (Q9JKA9) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 2 Length = 863 Score = 29.3 bits (64), Expect = 2.5 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%) Frame = +1 Query: 178 ISKPRPFSLAQTNPKLRR----GPIGPHNHQRPRCVDHPRVTTSSRSPAPGPAGLP 333 +++P LA +P+L R GP+ P P P +S R+P P G+P Sbjct: 714 VARPLVGPLALGSPRLVRRAPPGPLPPAASPGPPAASPPAAPSSPRAPRTSPYGVP 769
>HCN2_MOUSE (O88703) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 2 (Brain cyclic nucleotide gated channel 2) (BCNG-2) (Hyperpolarization-activated cation channel 1) (HAC-1) Length = 863 Score = 29.3 bits (64), Expect = 2.5 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%) Frame = +1 Query: 178 ISKPRPFSLAQTNPKLRR----GPIGPHNHQRPRCVDHPRVTTSSRSPAPGPAGLP 333 +++P LA +P+L R GP+ P P P +S R+P P G+P Sbjct: 714 VARPLVGPLALGSPRLVRRAPPGPLPPAASPGPPAASPPAAPSSPRAPRTSPYGVP 769
>SLOU_DROME (P22807) Homeobox protein slou (S59/2) (Protein slouch) (Homeobox| protein NK-1) Length = 659 Score = 29.3 bits (64), Expect = 2.5 Identities = 13/30 (43%), Positives = 15/30 (50%) Frame = +1 Query: 244 PHNHQRPRCVDHPRVTTSSRSPAPGPAGLP 333 PH H P V H R +SS + P PA P Sbjct: 228 PHPHPHPSAVFHLRAPSSSSTAPPSPATSP 257
>YQ35_CAEEL (Q09456) Putative cuticle collagen C09G5.5| Length = 317 Score = 29.3 bits (64), Expect = 2.5 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = +1 Query: 232 GPIGPHNHQRPRCVDHPRVTTSSRSPAPGPAGLP 333 G GP +HQ+ C+ P+ APGPAG P Sbjct: 119 GVAGPAHHQQQECIKCPQ-------GAPGPAGAP 145
>SYCP2_MOUSE (Q9CUU3) Synaptonemal complex protein 2 (SCP-2) (Synaptonemal| complex lateral element protein) (Fragment) Length = 557 Score = 28.9 bits (63), Expect = 3.3 Identities = 13/20 (65%), Positives = 16/20 (80%) Frame = -2 Query: 277 GQRIEDVGDCEAQLGLVAAL 218 G+RI DVGD E Q+G+V AL Sbjct: 204 GERILDVGDYELQVGIVEAL 223
>SYCP2_RAT (O70608) Synaptonemal complex protein 2 (SCP-2) (Synaptonemal| complex lateral element protein) (rnSCP2) Length = 1505 Score = 28.9 bits (63), Expect = 3.3 Identities = 13/20 (65%), Positives = 16/20 (80%) Frame = -2 Query: 277 GQRIEDVGDCEAQLGLVAAL 218 G+RI DVGD E Q+G+V AL Sbjct: 204 GERILDVGDYELQVGIVEAL 223
>APD14_APIME (Q06601) Apidaecins type 14 precursor [Contains: Apidaecin-2| (Apidaecin II); Apidaecin-1B (Apidaecin IB); Apidaecin-1A (Apidaecin IA)] Length = 168 Score = 28.9 bits (63), Expect = 3.3 Identities = 15/47 (31%), Positives = 23/47 (48%) Frame = +1 Query: 145 DPKPNKSPTSYISKPRPFSLAQTNPKLRRGPIGPHNHQRPRCVDHPR 285 + +P + YI +PRP +P+LRR P + RP + PR Sbjct: 121 EAEPGNNRPVYIPQPRP-----PHPRLRREPEAEPGNNRPVYIPQPR 162 Score = 28.9 bits (63), Expect = 3.3 Identities = 15/47 (31%), Positives = 23/47 (48%) Frame = +1 Query: 145 DPKPNKSPTSYISKPRPFSLAQTNPKLRRGPIGPHNHQRPRCVDHPR 285 + +P + YI +PRP +P+LRR P + RP + PR Sbjct: 95 EAEPGNNRPVYIPQPRP-----PHPRLRREPEAEPGNNRPVYIPQPR 136
>COL7_CAEEL (P18832) Cuticle collagen 7 precursor| Length = 316 Score = 28.9 bits (63), Expect = 3.3 Identities = 13/34 (38%), Positives = 18/34 (52%) Frame = +1 Query: 232 GPIGPHNHQRPRCVDHPRVTTSSRSPAPGPAGLP 333 G GP +HQ+ C+ P+ PGPAG+P Sbjct: 121 GVAGPSHHQKQECIKCPQ-------GLPGPAGVP 147
>ZN687_HUMAN (Q8N1G0) Zinc finger protein 687| Length = 1237 Score = 28.5 bits (62), Expect = 4.3 Identities = 14/41 (34%), Positives = 18/41 (43%) Frame = +1 Query: 205 AQTNPKLRRGPIGPHNHQRPRCVDHPRVTTSSRSPAPGPAG 327 AQ + GP+GPH Q P + + SPAP G Sbjct: 107 AQAAGVTKEGPVGPHRMQNGFGSPEPSLPGTPHSPAPPSGG 147
>PRD13_HUMAN (Q9H4Q3) PR domain zinc finger protein 13 (PR domain-containing| protein 13) Length = 717 Score = 28.5 bits (62), Expect = 4.3 Identities = 12/34 (35%), Positives = 15/34 (44%) Frame = +1 Query: 232 GPIGPHNHQRPRCVDHPRVTTSSRSPAPGPAGLP 333 G G H+H HP+ + P P P GLP Sbjct: 358 GGAGHHHHHHAHHHHHPKCLLAGDPPPPPPPGLP 391
>SC24D_HUMAN (O94855) Protein transport protein Sec24D (SEC24-related protein D)| Length = 1032 Score = 28.5 bits (62), Expect = 4.3 Identities = 18/59 (30%), Positives = 20/59 (33%) Frame = +1 Query: 145 DPKPNKSPTSYISKPRPFSLAQTNPKLRRGPIGPHNHQRPRCVDHPRVTTSSRSPAPGP 321 DP SPT + P T L GP P HQ + H R P P P Sbjct: 31 DPSHTASPTGMMKPAGPLGATATRGMLPPGPPPPGPHQFGQNGAHATGHPPQRFPGPPP 89
>PTN23_RAT (O88902) Tyrosine-protein phosphatase non-receptor type 23 (EC| 3.1.3.48) (His-domain-containing protein tyrosine phosphatase) (HD-PTP) (Protein tyrosine phosphatase TD14) (PTP-TD14) (Fragment) Length = 1499 Score = 28.1 bits (61), Expect = 5.6 Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 12/74 (16%) Frame = +1 Query: 148 PKPNKSPTSYISKPRPFSLAQTNPKLRRGPIGPHNHQRPRCVDHPRVTTSSR-------- 303 P+P P +P+P Q P+ +R GP Q+P HP + S Sbjct: 802 PQPQPPPQPQ-PQPQPQPQPQPQPQPQRPVFGPQPTQQPLPFQHPHLFPSQAPGILTPPP 860 Query: 304 ----SPAPGPAGLP 333 +P PG G P Sbjct: 861 PYPFTPQPGVLGQP 874
>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich| glycoprotein) Length = 620 Score = 28.1 bits (61), Expect = 5.6 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 3/63 (4%) Frame = +1 Query: 151 KPNKSPTSYISKPRPFSLAQTNPKLRRGPIGPHNHQRPRCVDH---PRVTTSSRSPAPGP 321 +P +Y P P + + P+ P PH RP + P T+ P+P P Sbjct: 553 QPRTPTPTYGQPPSPPTFSAPPPRQIHSPPPPHRQPRPPTPTYGQPPSPPTTYSPPSPPP 612 Query: 322 AGL 330 GL Sbjct: 613 YGL 615
>IF2_STRAW (Q82K53) Translation initiation factor IF-2| Length = 1046 Score = 28.1 bits (61), Expect = 5.6 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 1/62 (1%) Frame = +1 Query: 154 PNKSPTSYISKPRPFSLAQTNPKLRRGPIG-PHNHQRPRCVDHPRVTTSSRSPAPGPAGL 330 P K+ + P P A+ P R P P +RP + P ++ P PGP Sbjct: 60 PRKAAPAKPGAPSPAQAAR--PAAPRPPAPKPAAAERPAAAERPAAAPAAPGPRPGPKPA 117 Query: 331 PR 336 PR Sbjct: 118 PR 119
>H15_HUMAN (P16401) Histone H1.5 (Histone H1a)| Length = 225 Score = 27.7 bits (60), Expect = 7.4 Identities = 15/39 (38%), Positives = 21/39 (53%) Frame = +3 Query: 141 KGPKAQQKPYKLH*QTKTILLGPNKSKAATRPNWASQSP 257 K PK +KP K + P K+KAA +P A++SP Sbjct: 153 KTPKKAKKPAAAG--VKKVAKSPKKAKAAAKPKKATKSP 189
>QA1S_NEUCR (P11637) Quinate repressor| Length = 919 Score = 27.7 bits (60), Expect = 7.4 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 8/74 (10%) Frame = +1 Query: 142 KDPKPNKSPTSYISKPRPFSLAQT----NPKLRRGPIGPHNHQRPRCVDHPRVTTSSRSP 309 +DP P +S ++ S A N +G H + PR + + R T++ RS Sbjct: 15 RDPLPLPHISSSVASGMKRSFATMAMLYNDTGNSNDVGAHARRPPRTLSNSRSTSAHRSV 74 Query: 310 APG----PAGLPRR 339 +PG P PRR Sbjct: 75 SPGSWSAPNSPPRR 88
>TRIM7_MOUSE (Q923T7) Tripartite motif protein 7 (Glycogenin-interacting| protein) Length = 510 Score = 27.7 bits (60), Expect = 7.4 Identities = 15/43 (34%), Positives = 19/43 (44%) Frame = +1 Query: 151 KPNKSPTSYISKPRPFSLAQTNPKLRRGPIGPHNHQRPRCVDH 279 +PN+ + +S R FSL T P R P P RC H Sbjct: 90 RPNRQLAAVVSLLRRFSLPPTAPGERGTPAVPARAAAARCSQH 132
>GATA2_XENLA (P23770) GATA-binding factor 2 (GATA-2) (Transcription factor| xGATA-2) Length = 452 Score = 27.7 bits (60), Expect = 7.4 Identities = 17/56 (30%), Positives = 20/56 (35%), Gaps = 9/56 (16%) Frame = +1 Query: 193 PFSLAQTNPKLRRGPIGP---------HNHQRPRCVDHPRVTTSSRSPAPGPAGLP 333 PF A +P R G + P +H P P SP PGPA P Sbjct: 118 PFGKAPLHPAARGGSLYPGTGSSACPSSSHSSPHLFGFPPTPPKDVSPDPGPASPP 173
>H15_MOUSE (P43276) Histone H1.5 (H1 VAR.5) (H1b)| Length = 222 Score = 27.7 bits (60), Expect = 7.4 Identities = 15/39 (38%), Positives = 21/39 (53%) Frame = +3 Query: 141 KGPKAQQKPYKLH*QTKTILLGPNKSKAATRPNWASQSP 257 K PK +KP K + P K+KAA +P A++SP Sbjct: 150 KTPKKAKKPAAAG--VKKVAKSPKKAKAAAKPKKAAKSP 186
>AZI1_MOUSE (Q62036) 5-azacytidine-induced protein 1 (Pre-acrosome localization| protein 1) Length = 1060 Score = 27.7 bits (60), Expect = 7.4 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%) Frame = +1 Query: 229 RGPIGPHNHQRPRCVDHPRVTTSSRSPAP-GPA 324 R P P Q P CV HP+ + S P GPA Sbjct: 360 RAPEQPRPMQEPGCVTHPKANNAGASIYPTGPA 392
>104K_THEPA (P15711) 104 kDa microneme-rhoptry antigen precursor (p104)| Length = 924 Score = 27.7 bits (60), Expect = 7.4 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 2/62 (3%) Frame = +1 Query: 136 GLKDPKPNKSPTSYISKPRPFSLAQTN--PKLRRGPIGPHNHQRPRCVDHPRVTTSSRSP 309 G K K P S KP P + + P L + P GP + + PR PR + S R+ Sbjct: 537 GSDSSKEGKKPGSG-KKPGPAREHKPSKIPTLSKKPSGPKDPKHPRDPKEPRKSKSPRTA 595 Query: 310 AP 315 +P Sbjct: 596 SP 597
>MMP9_MOUSE (P41245) Matrix metalloproteinase-9 precursor (EC 3.4.24.35)| (MMP-9) (92 kDa type IV collagenase) (92 kDa gelatinase) (Gelatinase B) (GELB) Length = 730 Score = 27.7 bits (60), Expect = 7.4 Identities = 19/63 (30%), Positives = 27/63 (42%) Frame = +1 Query: 145 DPKPNKSPTSYISKPRPFSLAQTNPKLRRGPIGPHNHQRPRCVDHPRVTTSSRSPAPGPA 324 DP+P + T+ P ++ T P +GP P P T+S P+PGP Sbjct: 450 DPRPPATTTTEPQPTAPPTMCPTIPPTAYPTVGPT--VGPTGAPSPGPTSS---PSPGPT 504 Query: 325 GLP 333 G P Sbjct: 505 GAP 507
>SAN1_YEAST (P22470) Protein SAN1| Length = 610 Score = 27.7 bits (60), Expect = 7.4 Identities = 19/57 (33%), Positives = 25/57 (43%) Frame = +1 Query: 154 PNKSPTSYISKPRPFSLAQTNPKLRRGPIGPHNHQRPRCVDHPRVTTSSRSPAPGPA 324 PN S + ++ P S NP G G +N+Q PR V P SP P P+ Sbjct: 375 PNDSDRNGVNGP---SSTTQNPPSNSG--GSNNNQSPRWVPIPLTLFQFHSPNPNPS 426
>TAB3_XENLA (Q7ZXH3) Mitogen-activated protein kinase kinase kinase| 7-interacting protein 3 homolog Length = 692 Score = 27.7 bits (60), Expect = 7.4 Identities = 20/66 (30%), Positives = 28/66 (42%) Frame = +1 Query: 136 GLKDPKPNKSPTSYISKPRPFSLAQTNPKLRRGPIGPHNHQRPRCVDHPRVTTSSRSPAP 315 GL NK + S+ RP P L R P +N R HP +++RS +P Sbjct: 334 GLNKGPMNKIEITVESQQRP------GPTLNRSPSPINNQSAQRSQQHPVYVSNARSGSP 387 Query: 316 GPAGLP 333 G+P Sbjct: 388 S-RGIP 392
>ESA1_GIBZE (Q4IEV4) Histone acetyltransferase ESA1 (EC 2.3.1.48)| Length = 502 Score = 27.3 bits (59), Expect = 9.6 Identities = 17/62 (27%), Positives = 23/62 (37%) Frame = +1 Query: 142 KDPKPNKSPTSYISKPRPFSLAQTNPKLRRGPIGPHNHQRPRCVDHPRVTTSSRSPAPGP 321 KDPK K+PT K +P +Q P R + D +S + GP Sbjct: 96 KDPKAKKAPTVQSKKTQPSKKSQKRPSKREQSTTSEANTPHPWTDFVENQNRQKSASIGP 155 Query: 322 AG 327 G Sbjct: 156 DG 157
>CWC22_MAGGR (Q52B63) Pre-mRNA-splicing factor CWC22| Length = 907 Score = 27.3 bits (59), Expect = 9.6 Identities = 26/107 (24%), Positives = 39/107 (36%) Frame = +1 Query: 19 STSAINTNPREEKTSVINTSQFVKSPFFFLXXXXXXXXXGLKDPKPNKSPTSYISKPRPF 198 ST+ + P + SV N S +SP G + P P + S P Sbjct: 799 STAPRSGGPPRKAGSVDNRSPLSRSP------------SGSRSPSPRRRRDSPSRSP--- 843 Query: 199 SLAQTNPKLRRGPIGPHNHQRPRCVDHPRVTTSSRSPAPGPAGLPRR 339 + R P N + R + R + +RSP+P P+ RR Sbjct: 844 -VRDRESGGRAAAAAPGNSEARRGRSYSRSPSRTRSPSPAPSRRRRR 889
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 27.3 bits (59), Expect = 9.6 Identities = 20/62 (32%), Positives = 24/62 (38%) Frame = +1 Query: 136 GLKDPKPNKSPTSYISKPRPFSLAQTNPKLRRGPIGPHNHQRPRCVDHPRVTTSSRSPAP 315 G++ P P P Y PRP +RGP+ P RP PR R P Sbjct: 372 GMRGPPPLMPPHGYTGPPRPPPYG-----YQRGPLPP---PRPT----PRPPVPPRGPLR 419 Query: 316 GP 321 GP Sbjct: 420 GP 421
>PSC_DROME (P35820) Polycomb group protein Psc (Protein posterior sex combs)| Length = 1601 Score = 27.3 bits (59), Expect = 9.6 Identities = 14/59 (23%), Positives = 24/59 (40%) Frame = +1 Query: 154 PNKSPTSYISKPRPFSLAQTNPKLRRGPIGPHNHQRPRCVDHPRVTTSSRSPAPGPAGL 330 P SP + +K P T ++ + P + H + ++SP GPAG+ Sbjct: 1224 PKTSPPANAAKVTPLKPVLTPTQVDKKTPSPEKRTAAQMGSHSPTASENKSPKGGPAGV 1282
>PO2F1_RAT (P31503) POU domain, class 2, transcription factor 1| (Octamer-binding transcription factor 1) (Oct-1) (OTF-1) (NF-A1) (Fragment) Length = 632 Score = 27.3 bits (59), Expect = 9.6 Identities = 18/64 (28%), Positives = 24/64 (37%) Frame = +1 Query: 136 GLKDPKPNKSPTSYISKPRPFSLAQTNPKLRRGPIGPHNHQRPRCVDHPRVTTSSRSPAP 315 G D N + T IS P S A T+P L P + T ++ +P P Sbjct: 385 GTTDSTSNNTAT-VISTAPPASSAVTSPSLSPSPSASASTSEASSASETSTTQTTSTPLP 443 Query: 316 GPAG 327 P G Sbjct: 444 SPLG 447 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.315 0.133 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,280,983 Number of Sequences: 219361 Number of extensions: 812758 Number of successful extensions: 1989 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 1887 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1978 length of database: 80,573,946 effective HSP length: 89 effective length of database: 61,050,817 effective search space used: 1465219608 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits)