ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet120b03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_464472.1| Oryza sativa (japonica cultivar-group), mRNA 218 1e-53
2ref|XM_506747.1| PREDICTED Oryza sativa (japonica cultivar-group... 218 1e-53
3dbj|AK105018.2| Oryza sativa (japonica cultivar-group) cDNA clon... 218 1e-53
4dbj|AK099565.1| Oryza sativa (japonica cultivar-group) cDNA clon... 218 1e-53
5dbj|AK070521.1| Oryza sativa (japonica cultivar-group) cDNA clon... 218 1e-53
6gb|BT018049.1| Zea mays clone EL01N0531D09.c mRNA sequence 188 1e-44
7gb|AY111753.1| Zea mays CL11375_2 mRNA sequence 180 2e-42
8dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 163 6e-37
9dbj|AP004191.3| Oryza sativa (japonica cultivar-group) genomic D... 163 6e-37
10dbj|AP004184.3| Oryza sativa (japonica cultivar-group) genomic D... 163 6e-37
11gb|AY108192.1| Zea mays PCO101856 mRNA sequence 149 8e-33
12gb|BT024096.1| Zea mays clone EL01N0527B08 mRNA sequence 119 7e-24
13emb|BX927240.11| Zebrafish DNA sequence from clone DKEY-16N13 in... 42 1.4
14gb|AY126660.1| Canis lupus MHC class II antigen (Calu-DRB1) gene... 40 5.5
15gb|AY126652.1| Canis lupus MHC class II antigen (Calu-DQB1) gene... 40 5.5
16gb|AY126650.1| Canis lupus MHC class II antigen (DLA-DQB1) gene,... 40 5.5
17gb|DQ499153.1| Canis familiaris MHC class II antigen (DLA-DQB1) ... 40 5.5
18gb|U40959.1| Caenorhabditis elegans cosmid B0310, complete sequence 40 5.5
19gb|AF516923.1| Canis latrans MHC class II histocompatibility ant... 40 5.5
20gb|AF516916.1| Canis rufus MHC class II histocompatibility antig... 40 5.5
21gb|AY009512.1| Canis rufus MHC Class II antigen (Caru-DRB) gene,... 40 5.5
22gb|AY009511.1| Canis lupus MHC Class II antigen (Calu-DRB) gene,... 40 5.5
23gb|AY009510.1| Canis lupus MHC Class II antigen (Calu-DRB) gene,... 40 5.5
24emb|AJ316223.1|CFA316223 Canis lupus partial DLA-DQB1 gene for M... 40 5.5
25emb|AJ311095.1|CFA311095 Canis familiaris partial DLA-DRB1 gene ... 40 5.5
26gb|DQ415890.1| Canis familiaris MHC class II antigen (DLA-DQB1) ... 40 5.5
27dbj|AB223280.1| Aspergillus oryzae cDNA, contig sequence: AoEST0111 40 5.5
28dbj|AB223182.1| Aspergillus oryzae cDNA, contig sequence: AoEST0013 40 5.5
29dbj|AP007157.1| Aspergillus oryzae RIB40 genomic DNA, SC023 40 5.5
30gb|AC097494.3| Homo sapiens BAC clone RP11-273B19 from 4, comple... 40 5.5
31gb|S76138.1| DLA-DRB1 (DLA-DRB1-Dw3)=leucocyte antigen class II ... 40 5.5
32gb|AF336108.1|AF336108 Canis lupus MHC class II antigen beta cha... 40 5.5
33gb|AF343741.1|AF343741 Canis familiaris MHC class II antigen bet... 40 5.5
34gb|AF343740.1|AF343740 Canis lupus MHC class II antigen beta cha... 40 5.5
35gb|AF343732.1|AF343732 Canis lupus MHC class II antigen beta cha... 40 5.5
36gb|AY220508.1| Canis familiaris MHC class II antigen beta chain ... 40 5.5
37gb|AY220507.1| Canis familiaris MHC class II antigen beta chain ... 40 5.5
38gb|AF113704.1|AF113704 Canis familiaris MHC class II antigen DLA... 40 5.5
39gb|AF113705.1|AF113705 Canis familiaris MHC class II antigen DLA... 40 5.5
40gb|AY009941.1| Canis familiaris MHC class II antigen beta chain ... 40 5.5
41ref|NM_001014768.1| Canis familiaris MHC class II DLA DRB1 beta ... 40 5.5
42gb|AF043165.1|AF043165 Canis familiaris MHC class II DLA-DQ beta... 40 5.5
43gb|AF043164.1|AF043164 Canis familiaris MHC class II DLA-DQ beta... 40 5.5
44gb|AF043161.1|AF043161 Canis familiaris MHC class II DLA-DQ beta... 40 5.5
45gb|AF043160.1|AF043160 Canis familiaris MHC class II DLA-DQ beta... 40 5.5
46gb|AF043156.1|AF043156 Canis familiaris MHC class II DLA-DQ beta... 40 5.5
47gb|AF061039.1|AF061039 Canis familiaris MHC class II antigen bet... 40 5.5
48emb|AM084382.1| Canis familiaris partial DLA-DRB1 gene for MHC c... 40 5.5
49emb|AM076471.1| Canis familiaris partial DLA-DRB1 gene for MHC c... 40 5.5
50emb|AM076470.1| Canis familiaris partial DLA-DRB1 gene for MHC c... 40 5.5
51gb|U58685.1|CFU58685 Canis familiaris MHC Class II DLA DRBB1 bet... 40 5.5
52gb|M30129.1|DOGMHCDOBA Dog MHC class II DLA beta chain variable ... 40 5.5
53gb|M30132.1|DOGMHC3LAB Dog MHC class II DLA beta chain variable ... 40 5.5
54emb|AL772236.11| Mouse DNA sequence from clone RP23-98F14 on chr... 40 5.5
55emb|AJ012456.1|CFA012456 Canis Familiaris DLA-DRB1 gene, DRB1*08... 40 5.5
56emb|AJ012455.1|CFA012455 Canis Familiaris DLA-DRB1 gene, DRB1*29... 40 5.5
57gb|M29611.1|DOGMHDRBA C.familiaris MHC class II DLA-DR-beta-1 ge... 40 5.5
58gb|M57529.1|DOGMHCDW4 Canine MHC class II DLA-DRB mRNA (Dw4), pa... 40 5.5
59gb|M57535.1|DOGMHCD8 Canine MHC class II DLA-DRB mRNA (D8), part... 40 5.5
60dbj|AB045893.1| Nepenthes alata NaAP3 mRNA for aspartic proteina... 40 5.5 
>ref|XM_464472.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1613

 Score =  218 bits (110), Expect = 1e-53
 Identities = 176/198 (88%)
 Strand = Plus / Minus

                                                                        
Query: 212  cttcccggtgcaggttccgaatccgacgttgtagtcctcgcccttgcaacaagctgtcaa 271
            |||||| |||||||||||||||||||| |||||| | || ||||||||||||||||||||
Sbjct: 1386 cttcccagtgcaggttccgaatccgacattgtagccttcacccttgcaacaagctgtcaa 1327

                                                                        
Query: 272  gatgacttcatccccatcttggaggaacttgcgggtcgaattcccaactgatatctcctt 331
            |||||| |||||||||||||  ||||||||||||||||| || |||||||||||||||||
Sbjct: 1326 gatgacctcatccccatcttctaggaacttgcgggtcgagtttccaactgatatctcctt 1267

                                                                        
Query: 332  ctgcccgttccacgttatctccagcaagcatcccaaagagtccggttcaggtccactgag 391
            |||||| ||||| |||| ||||||||| ||||||||||| || |  |||||||| || ||
Sbjct: 1266 ctgcccattccatgttagctccagcaaacatcccaaagattctgtctcaggtccgcttag 1207

                              
Query: 392  ggtgccagtcgcaaacat 409
             |||||||| ||||||||
Sbjct: 1206 tgtgccagttgcaaacat 1189
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>ref|XM_506747.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1524_D08.17 mRNA
          Length = 1619

 Score =  218 bits (110), Expect = 1e-53
 Identities = 176/198 (88%)
 Strand = Plus / Minus

                                                                        
Query: 212  cttcccggtgcaggttccgaatccgacgttgtagtcctcgcccttgcaacaagctgtcaa 271
            |||||| |||||||||||||||||||| |||||| | || ||||||||||||||||||||
Sbjct: 1389 cttcccagtgcaggttccgaatccgacattgtagccttcacccttgcaacaagctgtcaa 1330

                                                                        
Query: 272  gatgacttcatccccatcttggaggaacttgcgggtcgaattcccaactgatatctcctt 331
            |||||| |||||||||||||  ||||||||||||||||| || |||||||||||||||||
Sbjct: 1329 gatgacctcatccccatcttctaggaacttgcgggtcgagtttccaactgatatctcctt 1270

                                                                        
Query: 332  ctgcccgttccacgttatctccagcaagcatcccaaagagtccggttcaggtccactgag 391
            |||||| ||||| |||| ||||||||| ||||||||||| || |  |||||||| || ||
Sbjct: 1269 ctgcccattccatgttagctccagcaaacatcccaaagattctgtctcaggtccgcttag 1210

                              
Query: 392  ggtgccagtcgcaaacat 409
             |||||||| ||||||||
Sbjct: 1209 tgtgccagttgcaaacat 1192
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>dbj|AK105018.2| Oryza sativa (japonica cultivar-group) cDNA clone:001-009-D02, full
            insert sequence
          Length = 1609

 Score =  218 bits (110), Expect = 1e-53
 Identities = 176/198 (88%)
 Strand = Plus / Minus

                                                                        
Query: 212  cttcccggtgcaggttccgaatccgacgttgtagtcctcgcccttgcaacaagctgtcaa 271
            |||||| |||||||||||||||||||| |||||| | || ||||||||||||||||||||
Sbjct: 1384 cttcccagtgcaggttccgaatccgacattgtagccttcacccttgcaacaagctgtcaa 1325

                                                                        
Query: 272  gatgacttcatccccatcttggaggaacttgcgggtcgaattcccaactgatatctcctt 331
            |||||| |||||||||||||  ||||||||||||||||| || |||||||||||||||||
Sbjct: 1324 gatgacctcatccccatcttctaggaacttgcgggtcgagtttccaactgatatctcctt 1265

                                                                        
Query: 332  ctgcccgttccacgttatctccagcaagcatcccaaagagtccggttcaggtccactgag 391
            |||||| ||||| |||| ||||||||| ||||||||||| || |  |||||||| || ||
Sbjct: 1264 ctgcccattccatgttagctccagcaaacatcccaaagattctgtctcaggtccgcttag 1205

                              
Query: 392  ggtgccagtcgcaaacat 409
             |||||||| ||||||||
Sbjct: 1204 tgtgccagttgcaaacat 1187
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>dbj|AK099565.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034M07, full
           insert sequence
          Length = 1177

 Score =  218 bits (110), Expect = 1e-53
 Identities = 176/198 (88%)
 Strand = Plus / Minus

                                                                       
Query: 212 cttcccggtgcaggttccgaatccgacgttgtagtcctcgcccttgcaacaagctgtcaa 271
           |||||| |||||||||||||||||||| |||||| | || ||||||||||||||||||||
Sbjct: 907 cttcccagtgcaggttccgaatccgacattgtagccttcacccttgcaacaagctgtcaa 848

                                                                       
Query: 272 gatgacttcatccccatcttggaggaacttgcgggtcgaattcccaactgatatctcctt 331
           |||||| |||||||||||||  ||||||||||||||||| || |||||||||||||||||
Sbjct: 847 gatgacctcatccccatcttctaggaacttgcgggtcgagtttccaactgatatctcctt 788

                                                                       
Query: 332 ctgcccgttccacgttatctccagcaagcatcccaaagagtccggttcaggtccactgag 391
           |||||| ||||| |||| ||||||||| ||||||||||| || |  |||||||| || ||
Sbjct: 787 ctgcccattccatgttagctccagcaaacatcccaaagattctgtctcaggtccgcttag 728

                             
Query: 392 ggtgccagtcgcaaacat 409
            |||||||| ||||||||
Sbjct: 727 tgtgccagttgcaaacat 710
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>dbj|AK070521.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023055F19, full
            insert sequence
          Length = 1619

 Score =  218 bits (110), Expect = 1e-53
 Identities = 176/198 (88%)
 Strand = Plus / Minus

                                                                        
Query: 212  cttcccggtgcaggttccgaatccgacgttgtagtcctcgcccttgcaacaagctgtcaa 271
            |||||| |||||||||||||||||||| |||||| | || ||||||||||||||||||||
Sbjct: 1389 cttcccagtgcaggttccgaatccgacattgtagccttcacccttgcaacaagctgtcaa 1330

                                                                        
Query: 272  gatgacttcatccccatcttggaggaacttgcgggtcgaattcccaactgatatctcctt 331
            |||||| |||||||||||||  ||||||||||||||||| || |||||||||||||||||
Sbjct: 1329 gatgacctcatccccatcttctaggaacttgcgggtcgagtttccaactgatatctcctt 1270

                                                                        
Query: 332  ctgcccgttccacgttatctccagcaagcatcccaaagagtccggttcaggtccactgag 391
            |||||| ||||| |||| ||||||||| ||||||||||| || |  |||||||| || ||
Sbjct: 1269 ctgcccattccatgttagctccagcaaacatcccaaagattctgtctcaggtccgcttag 1210

                              
Query: 392  ggtgccagtcgcaaacat 409
             |||||||| ||||||||
Sbjct: 1209 tgtgccagttgcaaacat 1192
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>gb|BT018049.1| Zea mays clone EL01N0531D09.c mRNA sequence
          Length = 872

 Score =  188 bits (95), Expect = 1e-44
 Identities = 191/223 (85%)
 Strand = Plus / Minus

                                                                       
Query: 184 tgttggctcatggcagtgacggcacgatcttcccggtgcaggttccgaatccgacgttgt 243
           |||||||||| || |||| |||||  | |||||||||||||||||| || || | |||||
Sbjct: 559 tgttggctcagggaagtgccggcagaaccttcccggtgcaggttccaaaaccaatgttgt 500

                                                                       
Query: 244 agtcctcgcccttgcaacaagctgtcaagatgacttcatccccatcttggaggaacttgc 303
           || |||| |||||||||||  ||||||||||||||||||| |||||||  ||||||||||
Sbjct: 499 agccctcacccttgcaacatcctgtcaagatgacttcatctccatcttctaggaacttgc 440

                                                                       
Query: 304 gggtcgaattcccaactgatatctccttctgcccgttccacgttatctccagcaagcatc 363
           ||||| ||||||| || | ||||||||||||||||||||| || | ||||||||  || |
Sbjct: 439 gggtcaaattccccaccggtatctccttctgcccgttccatgtcagctccagcagacacc 380

                                                      
Query: 364 ccaaagagtccggttcaggtccactgagggtgccagtcgcaaa 406
           | |  |||||||||||||||||||| || ||||||||||||||
Sbjct: 379 cgagcgagtccggttcaggtccactcagtgtgccagtcgcaaa 337
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>gb|AY111753.1| Zea mays CL11375_2 mRNA sequence
          Length = 644

 Score =  180 bits (91), Expect = 2e-42
 Identities = 190/223 (85%)
 Strand = Plus / Plus

                                                                       
Query: 184 tgttggctcatggcagtgacggcacgatcttcccggtgcaggttccgaatccgacgttgt 243
           |||||||||| || |||| |||||  | |||||||||||||||||| || || | |||||
Sbjct: 248 tgttggctcagggaagtgccggcagaaccttcccggtgcaggttccaaaaccaatgttgt 307

                                                                       
Query: 244 agtcctcgcccttgcaacaagctgtcaagatgacttcatccccatcttggaggaacttgc 303
           || | || |||||||||||  ||||||||||||||||||| |||||||  ||||||||||
Sbjct: 308 agccttcacccttgcaacatcctgtcaagatgacttcatctccatcttctaggaacttgc 367

                                                                       
Query: 304 gggtcgaattcccaactgatatctccttctgcccgttccacgttatctccagcaagcatc 363
           ||||| ||||||| || | ||||||||||||||||||||| || | ||||||||  || |
Sbjct: 368 gggtcaaattccccaccggtatctccttctgcccgttccatgtcagctccagcagacacc 427

                                                      
Query: 364 ccaaagagtccggttcaggtccactgagggtgccagtcgcaaa 406
           | |  |||||||||||||||||||| || ||||||||||||||
Sbjct: 428 cgagggagtccggttcaggtccactcagtgtgccagtcgcaaa 470
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  163 bits (82), Expect = 6e-37
 Identities = 109/118 (92%)
 Strand = Plus / Plus

                                                                           
Query: 253     ccttgcaacaagctgtcaagatgacttcatccccatcttggaggaacttgcgggtcgaat 312
               ||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||| |
Sbjct: 5415397 ccttgcaacaagctgtcaagatgacctcatccccatcttctaggaacttgcgggtcgagt 5415456

                                                                         
Query: 313     tcccaactgatatctccttctgcccgttccacgttatctccagcaagcatcccaaaga 370
               | ||||||||||||||||||||||| ||||| |||| ||||||||| |||||||||||
Sbjct: 5415457 ttccaactgatatctccttctgcccattccatgttagctccagcaaacatcccaaaga 5415514



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                                 
Query: 212     cttcccggtgcaggttccgaatccgacgttgtag 245
               |||||| |||||||||||||||||||| ||||||
Sbjct: 5415239 cttcccagtgcaggttccgaatccgacattgtag 5415272
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>dbj|AP004191.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1524_D08
          Length = 143046

 Score =  163 bits (82), Expect = 6e-37
 Identities = 109/118 (92%)
 Strand = Plus / Plus

                                                                         
Query: 253   ccttgcaacaagctgtcaagatgacttcatccccatcttggaggaacttgcgggtcgaat 312
             ||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||| |
Sbjct: 68978 ccttgcaacaagctgtcaagatgacctcatccccatcttctaggaacttgcgggtcgagt 69037

                                                                       
Query: 313   tcccaactgatatctccttctgcccgttccacgttatctccagcaagcatcccaaaga 370
             | ||||||||||||||||||||||| ||||| |||| ||||||||| |||||||||||
Sbjct: 69038 ttccaactgatatctccttctgcccattccatgttagctccagcaaacatcccaaaga 69095



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                               
Query: 212   cttcccggtgcaggttccgaatccgacgttgtag 245
             |||||| |||||||||||||||||||| ||||||
Sbjct: 68820 cttcccagtgcaggttccgaatccgacattgtag 68853
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>dbj|AP004184.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1225_F07
          Length = 142772

 Score =  163 bits (82), Expect = 6e-37
 Identities = 109/118 (92%)
 Strand = Plus / Plus

                                                                          
Query: 253    ccttgcaacaagctgtcaagatgacttcatccccatcttggaggaacttgcgggtcgaat 312
              ||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||| |
Sbjct: 141700 ccttgcaacaagctgtcaagatgacctcatccccatcttctaggaacttgcgggtcgagt 141759

                                                                        
Query: 313    tcccaactgatatctccttctgcccgttccacgttatctccagcaagcatcccaaaga 370
              | ||||||||||||||||||||||| ||||| |||| ||||||||| |||||||||||
Sbjct: 141760 ttccaactgatatctccttctgcccattccatgttagctccagcaaacatcccaaaga 141817



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                                
Query: 212    cttcccggtgcaggttccgaatccgacgttgtag 245
              |||||| |||||||||||||||||||| ||||||
Sbjct: 141542 cttcccagtgcaggttccgaatccgacattgtag 141575
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>gb|AY108192.1| Zea mays PCO101856 mRNA sequence
          Length = 1637

 Score =  149 bits (75), Expect = 8e-33
 Identities = 186/223 (83%)
 Strand = Plus / Minus

                                                                        
Query: 184  tgttggctcatggcagtgacggcacgatcttcccggtgcaggttccgaatccgacgttgt 243
            |||||||||| || |||| ||||| || |||||| ||||| ||||| || || | |||||
Sbjct: 1428 tgttggctcagggaagtgccggcaggaccttcccagtgcaagttccaaaaccaatgttgt 1369

                                                                        
Query: 244  agtcctcgcccttgcaacaagctgtcaagatgacttcatccccatcttggaggaacttgc 303
            || | || |||||||| ||  ||||||||||||| ||||| |||||||  || |||||||
Sbjct: 1368 agccttcacccttgcagcatcctgtcaagatgacctcatctccatcttctagaaacttgc 1309

                                                                        
Query: 304  gggtcgaattcccaactgatatctccttctgcccgttccacgttatctccagcaagcatc 363
            ||||| |||| || |||| ||||||||||||||||||||| |||| |||||  |  ||||
Sbjct: 1308 gggtcaaattgcccactggtatctccttctgcccgttccatgttagctccaatagacatc 1249

                                                       
Query: 364  ccaaagagtccggttcaggtccactgagggtgccagtcgcaaa 406
            | |  ||||||||||||||||||||||| |||||||| |||||
Sbjct: 1248 cgagggagtccggttcaggtccactgagtgtgccagttgcaaa 1206
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>gb|BT024096.1| Zea mays clone EL01N0527B08 mRNA sequence
          Length = 1600

 Score =  119 bits (60), Expect = 7e-24
 Identities = 141/168 (83%)
 Strand = Plus / Minus

                                                                        
Query: 239  gttgtagtcctcgcccttgcaacaagctgtcaagatgacttcatccccatcttggaggaa 298
            ||||||| | || |||||||| ||  ||||||||||||| ||||| |||||||  |  ||
Sbjct: 1374 gttgtagccttcacccttgcagcatcctgtcaagatgacctcatctccatcttctaaaaa 1315

                                                                        
Query: 299  cttgcgggtcgaattcccaactgatatctccttctgcccgttccacgttatctccagcaa 358
            |||||||||| |||| || |||| ||||||||||||||||||||| |||| |||||  | 
Sbjct: 1314 cttgcgggtcaaattgcccactggtatctccttctgcccgttccatgttagctccaatag 1255

                                                            
Query: 359  gcatcccaaagagtccggttcaggtccactgagggtgccagtcgcaaa 406
             ||||| |  ||||||||||||||||||||||| |||||||| |||||
Sbjct: 1254 acatccgagggagtccggttcaggtccactgagtgtgccagttgcaaa 1207
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>emb|BX927240.11| Zebrafish DNA sequence from clone DKEY-16N13 in linkage group 18,
             complete sequence
          Length = 263615

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 8     tataatataagtatttaagta 28
             |||||||||||||||||||||
Sbjct: 42395 tataatataagtatttaagta 42375
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>gb|AY126660.1| Canis lupus MHC class II antigen (Calu-DRB1) gene, Calu-DRB1*14
           allele, exon 2 and partial cds
          Length = 270

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 324 atctccttctgcccgttcca 343
           ||||||||||||||||||||
Sbjct: 187 atctccttctgcccgttcca 168
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>gb|AY126652.1| Canis lupus MHC class II antigen (Calu-DQB1) gene, Calu-DQB1*01
           allele, exon 2 and partial cds
          Length = 267

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 324 atctccttctgcccgttcca 343
           ||||||||||||||||||||
Sbjct: 185 atctccttctgcccgttcca 166
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>gb|AY126650.1| Canis lupus MHC class II antigen (DLA-DQB1) gene, DLA-DQB1*04001
           allele, exon 2 and partial cds
          Length = 267

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 324 atctccttctgcccgttcca 343
           ||||||||||||||||||||
Sbjct: 185 atctccttctgcccgttcca 166
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>gb|DQ499153.1| Canis familiaris MHC class II antigen (DLA-DQB1) gene,
           DLA-DQB1*05301 allele, exon 2 and partial cds
          Length = 267

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 324 atctccttctgcccgttcca 343
           ||||||||||||||||||||
Sbjct: 185 atctccttctgcccgttcca 166
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>gb|U40959.1| Caenorhabditis elegans cosmid B0310, complete sequence
          Length = 39130

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 124   taagcccttgaagatacatg 143
             ||||||||||||||||||||
Sbjct: 25707 taagcccttgaagatacatg 25726
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>gb|AF516923.1| Canis latrans MHC class II histocompatibility antigen (Cala-DRB)
           gene, Cala-DRB*16 allele, partial cds
          Length = 280

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 324 atctccttctgcccgttcca 343
           ||||||||||||||||||||
Sbjct: 179 atctccttctgcccgttcca 160
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>gb|AF516916.1| Canis rufus MHC class II histocompatibility antigen (Caru-DRB)
           gene, Caru-DRB*1 allele, partial cds
          Length = 280

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 324 atctccttctgcccgttcca 343
           ||||||||||||||||||||
Sbjct: 179 atctccttctgcccgttcca 160
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>gb|AY009512.1| Canis rufus MHC Class II antigen (Caru-DRB) gene, Caru-DRB*1
           allele, exon 2 and partial cds
          Length = 207

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 324 atctccttctgcccgttcca 343
           ||||||||||||||||||||
Sbjct: 146 atctccttctgcccgttcca 127
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>gb|AY009511.1| Canis lupus MHC Class II antigen (Calu-DRB) gene, Calu-DRB*11
           allele, exon 2 and partial cds
          Length = 207

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 324 atctccttctgcccgttcca 343
           ||||||||||||||||||||
Sbjct: 146 atctccttctgcccgttcca 127
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>gb|AY009510.1| Canis lupus MHC Class II antigen (Calu-DRB) gene, Calu-DRB*6
           allele, exon 2 and partial cds
          Length = 207

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 324 atctccttctgcccgttcca 343
           ||||||||||||||||||||
Sbjct: 146 atctccttctgcccgttcca 127
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>emb|AJ316223.1|CFA316223 Canis lupus partial DLA-DQB1 gene for MHC class II antigen,
           DQB1*04001 allele, exon 2
          Length = 267

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 324 atctccttctgcccgttcca 343
           ||||||||||||||||||||
Sbjct: 185 atctccttctgcccgttcca 166
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>emb|AJ311095.1|CFA311095 Canis familiaris partial DLA-DRB1 gene for MHC class II antigen,
           exon 2 DRB1*05101 allele
          Length = 270

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 324 atctccttctgcccgttcca 343
           ||||||||||||||||||||
Sbjct: 187 atctccttctgcccgttcca 168
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>gb|DQ415890.1| Canis familiaris MHC class II antigen (DLA-DQB1) gene,
           DLA-DQB1*Bali1 allele, exon 2 and partial cds
          Length = 267

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 324 atctccttctgcccgttcca 343
           ||||||||||||||||||||
Sbjct: 185 atctccttctgcccgttcca 166
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>dbj|AB223280.1| Aspergillus oryzae cDNA, contig sequence: AoEST0111
          Length = 732

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 112 taccatcactactaagccct 131
           ||||||||||||||||||||
Sbjct: 349 taccatcactactaagccct 368
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>dbj|AB223182.1| Aspergillus oryzae cDNA, contig sequence: AoEST0013
          Length = 732

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 112 taccatcactactaagccct 131
           ||||||||||||||||||||
Sbjct: 146 taccatcactactaagccct 165
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>dbj|AP007157.1| Aspergillus oryzae RIB40 genomic DNA, SC023
          Length = 2661830

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 112     taccatcactactaagccct 131
               ||||||||||||||||||||
Sbjct: 1917019 taccatcactactaagccct 1917000
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>gb|AC097494.3| Homo sapiens BAC clone RP11-273B19 from 4, complete sequence
          Length = 144135

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 145   cagctctgctttattccaag 164
             ||||||||||||||||||||
Sbjct: 39528 cagctctgctttattccaag 39547
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>gb|S76138.1| DLA-DRB1 (DLA-DRB1-Dw3)=leucocyte antigen class II region [dogs,
           Genomic, 300 nt]
          Length = 300

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 324 atctccttctgcccgttcca 343
           ||||||||||||||||||||
Sbjct: 212 atctccttctgcccgttcca 193
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>gb|AF336108.1|AF336108 Canis lupus MHC class II antigen beta chain (DLA-DRB1) gene,
           DLA-DRB1*03101 allele, partial cds
          Length = 270

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 324 atctccttctgcccgttcca 343
           ||||||||||||||||||||
Sbjct: 187 atctccttctgcccgttcca 168
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>gb|AF343741.1|AF343741 Canis familiaris MHC class II antigen beta chain (DLA-DRB1) gene,
           DLA-DRB1*04001 allele, partial cds
          Length = 270

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 324 atctccttctgcccgttcca 343
           ||||||||||||||||||||
Sbjct: 187 atctccttctgcccgttcca 168
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>gb|AF343740.1|AF343740 Canis lupus MHC class II antigen beta chain (DLA-DRB1) gene,
           DLA-DRB1*03901 allele, partial cds
          Length = 270

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 324 atctccttctgcccgttcca 343
           ||||||||||||||||||||
Sbjct: 187 atctccttctgcccgttcca 168
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>gb|AF343732.1|AF343732 Canis lupus MHC class II antigen beta chain (DLA-DQB1) gene,
           DLA-DQB1*01401 allele, partial cds
          Length = 267

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 324 atctccttctgcccgttcca 343
           ||||||||||||||||||||
Sbjct: 185 atctccttctgcccgttcca 166
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>gb|AY220508.1| Canis familiaris MHC class II antigen beta chain (DLA-DRB1) gene,
           DLA-DRB1*05801 allele, exon 2 and partial cds
          Length = 270

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 324 atctccttctgcccgttcca 343
           ||||||||||||||||||||
Sbjct: 187 atctccttctgcccgttcca 168
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>gb|AY220507.1| Canis familiaris MHC class II antigen beta chain (DLA-DRB1) gene,
           DLA-DRB1*05701 allele, exon 2 and partial cds
          Length = 270

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 324 atctccttctgcccgttcca 343
           ||||||||||||||||||||
Sbjct: 187 atctccttctgcccgttcca 168
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>gb|AF113704.1|AF113704 Canis familiaris MHC class II antigen DLA-DQ beta chain domain 1
           DLA-DQB1 gene (DLA-DQB1-DQB22 allele), exon 2 and
           partial cds
          Length = 267

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 324 atctccttctgcccgttcca 343
           ||||||||||||||||||||
Sbjct: 185 atctccttctgcccgttcca 166
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>gb|AF113705.1|AF113705 Canis familiaris MHC class II antigen DLA-DQ beta chain domain 1
           DLA-DQB1 gene (DLA-DQB1-DQB23 allele), exon 2 and
           partial cds
          Length = 267

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 324 atctccttctgcccgttcca 343
           ||||||||||||||||||||
Sbjct: 185 atctccttctgcccgttcca 166
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>gb|AY009941.1| Canis familiaris MHC class II antigen beta chain (DLA-DRB1) gene,
           DLA-DRB1*03201 allele, partial cds
          Length = 270

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 324 atctccttctgcccgttcca 343
           ||||||||||||||||||||
Sbjct: 187 atctccttctgcccgttcca 168
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>ref|NM_001014768.1| Canis familiaris MHC class II DLA DRB1 beta chain (DLA-DRB1), mRNA
          Length = 1165

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 324 atctccttctgcccgttcca 343
           ||||||||||||||||||||
Sbjct: 326 atctccttctgcccgttcca 307
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>gb|AF043165.1|AF043165 Canis familiaris MHC class II DLA-DQ beta chain b1 domain DLA-DQBC1
           gene (DQB20 allele), exon 2 and partial cds
          Length = 267

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 324 atctccttctgcccgttcca 343
           ||||||||||||||||||||
Sbjct: 185 atctccttctgcccgttcca 166
to top
>gb|AF043164.1|AF043164 Canis familiaris MHC class II DLA-DQ beta chain b1 domain DLA-DQBC1
           gene (DQB19 allele), exon 2 and partial cds
          Length = 267

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 324 atctccttctgcccgttcca 343
           ||||||||||||||||||||
Sbjct: 185 atctccttctgcccgttcca 166
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>gb|AF043161.1|AF043161 Canis familiaris MHC class II DLA-DQ beta chain b1 domain DLA-DQBC1
           gene (DQB16 allele), exon 2 and partial cds
          Length = 267

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 324 atctccttctgcccgttcca 343
           ||||||||||||||||||||
Sbjct: 185 atctccttctgcccgttcca 166
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>gb|AF043160.1|AF043160 Canis familiaris MHC class II DLA-DQ beta chain b1 domain DLA-DQBC1
           gene (DQB15 allele), exon 2 and partial cds
          Length = 267

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 324 atctccttctgcccgttcca 343
           ||||||||||||||||||||
Sbjct: 185 atctccttctgcccgttcca 166
to top
>gb|AF043156.1|AF043156 Canis familiaris MHC class II DLA-DQ beta chain b1 domain DLA-DQBC1
           gene (DQB11 allele), exon 2 and partial cds
          Length = 267

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 324 atctccttctgcccgttcca 343
           ||||||||||||||||||||
Sbjct: 185 atctccttctgcccgttcca 166
to top
>gb|AF061039.1|AF061039 Canis familiaris MHC class II antigen beta chain DLA-DRBB1 gene,
           (DLA-DRBB1-DRB26 allele), exon 2 and partial cds
          Length = 267

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 324 atctccttctgcccgttcca 343
           ||||||||||||||||||||
Sbjct: 185 atctccttctgcccgttcca 166
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>emb|AM084382.1| Canis familiaris partial DLA-DRB1 gene for MHC class II antigen,
           DLA-DRB1*00103 allele, exon 2
          Length = 270

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 324 atctccttctgcccgttcca 343
           ||||||||||||||||||||
Sbjct: 187 atctccttctgcccgttcca 168
to top
>emb|AM076471.1| Canis familiaris partial DLA-DRB1 gene for MHC class II antigen,
           DLA-DRB1*06901 allele, exon 2
          Length = 270

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 324 atctccttctgcccgttcca 343
           ||||||||||||||||||||
Sbjct: 187 atctccttctgcccgttcca 168
to top
>emb|AM076470.1| Canis familiaris partial DLA-DRB1 gene for MHC class II antigen,
           DLA-DRB1*06801 allele, exon 2
          Length = 270

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 324 atctccttctgcccgttcca 343
           ||||||||||||||||||||
Sbjct: 187 atctccttctgcccgttcca 168
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>gb|U58685.1|CFU58685 Canis familiaris MHC Class II DLA DRBB1 beta chain gene (allele
           D22), exon 2 and partial cds
          Length = 267

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 324 atctccttctgcccgttcca 343
           ||||||||||||||||||||
Sbjct: 185 atctccttctgcccgttcca 166
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>gb|M30129.1|DOGMHCDOBA Dog MHC class II DLA beta chain variable region (1-Dob-A) gene
          Length = 163

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 324 atctccttctgcccgttcca 343
           ||||||||||||||||||||
Sbjct: 129 atctccttctgcccgttcca 110
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>gb|M30132.1|DOGMHC3LAB Dog MHC class II DLA beta chain variable region (3-Lab) gene
          Length = 166

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 324 atctccttctgcccgttcca 343
           ||||||||||||||||||||
Sbjct: 132 atctccttctgcccgttcca 113
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>emb|AL772236.11| Mouse DNA sequence from clone RP23-98F14 on chromosome 4, complete
             sequence
          Length = 207430

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 168   tgaagatcatcctccctgtt 187
             ||||||||||||||||||||
Sbjct: 50979 tgaagatcatcctccctgtt 50960
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>emb|AJ012456.1|CFA012456 Canis Familiaris DLA-DRB1 gene, DRB1*0802 allele, exon 2
          Length = 270

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 324 atctccttctgcccgttcca 343
           ||||||||||||||||||||
Sbjct: 187 atctccttctgcccgttcca 168
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>emb|AJ012455.1|CFA012455 Canis Familiaris DLA-DRB1 gene, DRB1*2901 allele, exon 2
          Length = 270

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 324 atctccttctgcccgttcca 343
           ||||||||||||||||||||
Sbjct: 187 atctccttctgcccgttcca 168
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>gb|M29611.1|DOGMHDRBA C.familiaris MHC class II DLA-DR-beta-1 gene, complete cds
          Length = 1165

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 324 atctccttctgcccgttcca 343
           ||||||||||||||||||||
Sbjct: 326 atctccttctgcccgttcca 307
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>gb|M57529.1|DOGMHCDW4 Canine MHC class II DLA-DRB mRNA (Dw4), partial cds
          Length = 771

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 324 atctccttctgcccgttcca 343
           ||||||||||||||||||||
Sbjct: 275 atctccttctgcccgttcca 256
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>gb|M57535.1|DOGMHCD8 Canine MHC class II DLA-DRB mRNA (D8), partial cds
          Length = 771

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 324 atctccttctgcccgttcca 343
           ||||||||||||||||||||
Sbjct: 275 atctccttctgcccgttcca 256
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>dbj|AB045893.1| Nepenthes alata NaAP3 mRNA for aspartic proteinase 3, complete cds
          Length = 1753

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 311 attcccaactgatatctcct 330
           ||||||||||||||||||||
Sbjct: 611 attcccaactgatatctcct 592


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,334,955
Number of Sequences: 3902068
Number of extensions: 3334955
Number of successful extensions: 59316
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59209
Number of HSP's gapped (non-prelim): 103
length of query: 411
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 389
effective length of database: 17,147,199,772
effective search space: 6670260711308
effective search space used: 6670260711308
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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