ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet11g10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_197308.1| Oryza sativa (japonica cultivar-group) putative... 46 0.062
2gb|AC073867.6| Oryza sativa chromosome 10 BAC OSJNBa0055O03 geno... 46 0.062
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.062
4dbj|AK070496.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.062
5gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 46 0.062
6gb|AY350710.1| Brassica oleracea clone BAC Bo37N21, partial sequ... 42 0.97
7emb|CT025527.7| Mouse DNA sequence from clone RP23-279J20 on chr... 40 3.8
8emb|AL022238.1|HS1042K10 Human DNA sequence from clone RP5-1042K... 40 3.8
9emb|AL031854.1|SPBC337 S.pombe chromosome II cosmid c337 40 3.8
10gb|AC104111.2| Homo sapiens chromosome 5 clone RP11-176O14, comp... 40 3.8
11ref|NM_001021311.1| Schizosaccharomyces pombe 972h- hypothetical... 40 3.8
12gb|AC023115.6| Homo sapiens BAC clone RP11-269A16 from 2, comple... 40 3.8
13gb|AC006063.1|AC006063 Homo sapiens 12p13.3 PAC RP3-377H17 (Rosw... 40 3.8
14gb|AC154631.2| Mus musculus BAC clone RP23-264F8 from 16, comple... 40 3.8
15emb|CT025544.17| Mouse DNA sequence from clone RP23-204K2 on chr... 40 3.8

>ref|NM_197308.1| Oryza sativa (japonica cultivar-group) putative serine peptidase
            (OSJNBa0055O03.7), mRNA
          Length = 2369

 Score = 46.1 bits (23), Expect = 0.062
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 250  caggtgatcagtaggtagctatgctccatct 280
            ||||| ||||||| |||||||||||||||||
Sbjct: 2047 caggtaatcagtaagtagctatgctccatct 2017



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>gb|AC073867.6| Oryza sativa chromosome 10 BAC OSJNBa0055O03 genomic sequence, complete
             sequence
          Length = 82909

 Score = 46.1 bits (23), Expect = 0.062
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 250   caggtgatcagtaggtagctatgctccatct 280
             ||||| ||||||| |||||||||||||||||
Sbjct: 15304 caggtaatcagtaagtagctatgctccatct 15274



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 46.1 bits (23), Expect = 0.062
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                               
Query: 250      caggtgatcagtaggtagctatgctccatct 280
                ||||| ||||||| |||||||||||||||||
Sbjct: 19162960 caggtaatcagtaagtagctatgctccatct 19162930



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>dbj|AK070496.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054G22, full
            insert sequence
          Length = 1986

 Score = 46.1 bits (23), Expect = 0.062
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 250  caggtgatcagtaggtagctatgctccatct 280
            ||||| ||||||| |||||||||||||||||
Sbjct: 1652 caggtaatcagtaagtagctatgctccatct 1622



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 46.1 bits (23), Expect = 0.062
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                               
Query: 250      caggtgatcagtaggtagctatgctccatct 280
                ||||| ||||||| |||||||||||||||||
Sbjct: 19174236 caggtaatcagtaagtagctatgctccatct 19174206



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>gb|AY350710.1| Brassica oleracea clone BAC Bo37N21, partial sequence
          Length = 78346

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 24    atatattcagatattttcaaa 44
             |||||||||||||||||||||
Sbjct: 12970 atatattcagatattttcaaa 12950



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>emb|CT025527.7| Mouse DNA sequence from clone RP23-279J20 on chromosome 16, complete
             sequence
          Length = 202976

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 9     ctgcttccattgtcaatata 28
             ||||||||||||||||||||
Sbjct: 85597 ctgcttccattgtcaatata 85578



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>emb|AL022238.1|HS1042K10 Human DNA sequence from clone RP5-1042K10 on chromosome 22q13.1-13.2,
              complete sequence
          Length = 184180

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 237    atgtttgcctgcacaggtga 256
              ||||||||||||||||||||
Sbjct: 127203 atgtttgcctgcacaggtga 127222



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>emb|AL031854.1|SPBC337 S.pombe chromosome II cosmid c337
          Length = 37342

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 21   tcaatatattcagatatttt 40
            ||||||||||||||||||||
Sbjct: 5159 tcaatatattcagatatttt 5140



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>gb|AC104111.2| Homo sapiens chromosome 5 clone RP11-176O14, complete sequence
          Length = 171234

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 26    atattcagatattttcaaac 45
             ||||||||||||||||||||
Sbjct: 89566 atattcagatattttcaaac 89547



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>ref|NM_001021311.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPBC337.03),
           partial mRNA
          Length = 1164

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 21  tcaatatattcagatatttt 40
           ||||||||||||||||||||
Sbjct: 236 tcaatatattcagatatttt 217



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>gb|AC023115.6| Homo sapiens BAC clone RP11-269A16 from 2, complete sequence
          Length = 112289

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 212   tataaatacaacagcagtgc 231
             ||||||||||||||||||||
Sbjct: 92772 tataaatacaacagcagtgc 92791



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>gb|AC006063.1|AC006063 Homo sapiens 12p13.3 PAC RP3-377H17 (Roswell Park Cancer Institute
             Human PAC Library) complete sequence
          Length = 150001

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 268   ctatgctccatctgctcccc 287
             ||||||||||||||||||||
Sbjct: 42821 ctatgctccatctgctcccc 42802



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>gb|AC154631.2| Mus musculus BAC clone RP23-264F8 from 16, complete sequence
          Length = 201820

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 9     ctgcttccattgtcaatata 28
             ||||||||||||||||||||
Sbjct: 10779 ctgcttccattgtcaatata 10798



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>emb|CT025544.17| Mouse DNA sequence from clone RP23-204K2 on chromosome 14, complete
              sequence
          Length = 199783

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 25     tatattcagatattttcaaa 44
              ||||||||||||||||||||
Sbjct: 108162 tatattcagatattttcaaa 108143


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,321,230
Number of Sequences: 3902068
Number of extensions: 2321230
Number of successful extensions: 47268
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47219
Number of HSP's gapped (non-prelim): 49
length of query: 293
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 271
effective length of database: 17,147,199,772
effective search space: 4646891138212
effective search space used: 4646891138212
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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