| Clone Name | rbaet11g10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_197308.1| Oryza sativa (japonica cultivar-group) putative serine peptidase (OSJNBa0055O03.7), mRNA Length = 2369 Score = 46.1 bits (23), Expect = 0.062 Identities = 29/31 (93%) Strand = Plus / Minus Query: 250 caggtgatcagtaggtagctatgctccatct 280 ||||| ||||||| ||||||||||||||||| Sbjct: 2047 caggtaatcagtaagtagctatgctccatct 2017
>gb|AC073867.6| Oryza sativa chromosome 10 BAC OSJNBa0055O03 genomic sequence, complete sequence Length = 82909 Score = 46.1 bits (23), Expect = 0.062 Identities = 29/31 (93%) Strand = Plus / Minus Query: 250 caggtgatcagtaggtagctatgctccatct 280 ||||| ||||||| ||||||||||||||||| Sbjct: 15304 caggtaatcagtaagtagctatgctccatct 15274
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 46.1 bits (23), Expect = 0.062 Identities = 29/31 (93%) Strand = Plus / Minus Query: 250 caggtgatcagtaggtagctatgctccatct 280 ||||| ||||||| ||||||||||||||||| Sbjct: 19162960 caggtaatcagtaagtagctatgctccatct 19162930
>dbj|AK070496.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054G22, full insert sequence Length = 1986 Score = 46.1 bits (23), Expect = 0.062 Identities = 29/31 (93%) Strand = Plus / Minus Query: 250 caggtgatcagtaggtagctatgctccatct 280 ||||| ||||||| ||||||||||||||||| Sbjct: 1652 caggtaatcagtaagtagctatgctccatct 1622
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 46.1 bits (23), Expect = 0.062 Identities = 29/31 (93%) Strand = Plus / Minus Query: 250 caggtgatcagtaggtagctatgctccatct 280 ||||| ||||||| ||||||||||||||||| Sbjct: 19174236 caggtaatcagtaagtagctatgctccatct 19174206
>gb|AY350710.1| Brassica oleracea clone BAC Bo37N21, partial sequence Length = 78346 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 24 atatattcagatattttcaaa 44 ||||||||||||||||||||| Sbjct: 12970 atatattcagatattttcaaa 12950
>emb|CT025527.7| Mouse DNA sequence from clone RP23-279J20 on chromosome 16, complete sequence Length = 202976 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 ctgcttccattgtcaatata 28 |||||||||||||||||||| Sbjct: 85597 ctgcttccattgtcaatata 85578
>emb|AL022238.1|HS1042K10 Human DNA sequence from clone RP5-1042K10 on chromosome 22q13.1-13.2, complete sequence Length = 184180 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 atgtttgcctgcacaggtga 256 |||||||||||||||||||| Sbjct: 127203 atgtttgcctgcacaggtga 127222
>emb|AL031854.1|SPBC337 S.pombe chromosome II cosmid c337 Length = 37342 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tcaatatattcagatatttt 40 |||||||||||||||||||| Sbjct: 5159 tcaatatattcagatatttt 5140
>gb|AC104111.2| Homo sapiens chromosome 5 clone RP11-176O14, complete sequence Length = 171234 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 atattcagatattttcaaac 45 |||||||||||||||||||| Sbjct: 89566 atattcagatattttcaaac 89547
>ref|NM_001021311.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPBC337.03), partial mRNA Length = 1164 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tcaatatattcagatatttt 40 |||||||||||||||||||| Sbjct: 236 tcaatatattcagatatttt 217
>gb|AC023115.6| Homo sapiens BAC clone RP11-269A16 from 2, complete sequence Length = 112289 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 tataaatacaacagcagtgc 231 |||||||||||||||||||| Sbjct: 92772 tataaatacaacagcagtgc 92791
>gb|AC006063.1|AC006063 Homo sapiens 12p13.3 PAC RP3-377H17 (Roswell Park Cancer Institute Human PAC Library) complete sequence Length = 150001 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 ctatgctccatctgctcccc 287 |||||||||||||||||||| Sbjct: 42821 ctatgctccatctgctcccc 42802
>gb|AC154631.2| Mus musculus BAC clone RP23-264F8 from 16, complete sequence Length = 201820 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 ctgcttccattgtcaatata 28 |||||||||||||||||||| Sbjct: 10779 ctgcttccattgtcaatata 10798
>emb|CT025544.17| Mouse DNA sequence from clone RP23-204K2 on chromosome 14, complete sequence Length = 199783 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 tatattcagatattttcaaa 44 |||||||||||||||||||| Sbjct: 108162 tatattcagatattttcaaa 108143 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,321,230 Number of Sequences: 3902068 Number of extensions: 2321230 Number of successful extensions: 47268 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47219 Number of HSP's gapped (non-prelim): 49 length of query: 293 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 271 effective length of database: 17,147,199,772 effective search space: 4646891138212 effective search space used: 4646891138212 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)