ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet11g09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF498269.1| Haynaldia villosa clone kong32 mRNA Length = 1219 Score = 291 bits (147), Expect = 6e-76 Identities = 153/155 (98%) Strand = Plus / Minus Query: 115 gcttaaagcgagaggccgccggactcctcgtcctcgtcgaggccggaggtgtagacggtg 174 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1089 gcttagagcgagaggccgccggactcctcgtcctcgtcgaggccggaggtgtagacggtg 1030 Query: 175 taaagcgaccagatgaggccgaagacgcccaggaggatccaccccagcaggttgttgctc 234 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1029 tagagcgaccagatgaggccgaagacgcccaggaggatccaccccagcaggttgttgctc 970 Query: 235 agccccaggctgagcccggtgccctccgtcgacat 269 ||||||||||||||||||||||||||||||||||| Sbjct: 969 agccccaggctgagcccggtgccctccgtcgacat 935 Score = 159 bits (80), Expect = 5e-36 Identities = 89/92 (96%) Strand = Plus / Minus Query: 1 cagaatggaaacgcttagatacaaatatccatgtctggaattacattacaccgatcatgg 60 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 1192 cagaatggaaacgcttagatacaaatatccatctctggaattacattacaccgatcatgg 1133 Query: 61 cgatgctcgtgagcggattacatgaggcgacg 92 ||||||||| |||||||||||||||| ||||| Sbjct: 1132 cgatgctcgcgagcggattacatgagacgacg 1101
>ref|NM_191445.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 480 Score = 224 bits (113), Expect = 1e-55 Identities = 140/149 (93%) Strand = Plus / Minus Query: 121 agcgagaggccgccggactcctcgtcctcgtcgaggccggaggtgtagacggtgtaaagc 180 ||||||||||||||||||||||||||||| |||||| |||||||||||| |||||| ||| Sbjct: 360 agcgagaggccgccggactcctcgtcctcctcgaggtcggaggtgtagatggtgtagagc 301 Query: 181 gaccagatgaggccgaagacgcccaggaggatccaccccagcaggttgttgctcagcccc 240 ||||||||||||||||| || || || |||||||||||||||||||||||||||||||| Sbjct: 300 gaccagatgaggccgaacaccccgagcaggatccaccccagcaggttgttgctcagcccg 241 Query: 241 aggctgagcccggtgccctccgtcgacat 269 ||||||||||||||||||||||||||||| Sbjct: 240 aggctgagcccggtgccctccgtcgacat 212
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 224 bits (113), Expect = 1e-55 Identities = 140/149 (93%) Strand = Plus / Plus Query: 121 agcgagaggccgccggactcctcgtcctcgtcgaggccggaggtgtagacggtgtaaagc 180 ||||||||||||||||||||||||||||| |||||| |||||||||||| |||||| ||| Sbjct: 32701991 agcgagaggccgccggactcctcgtcctcctcgaggtcggaggtgtagatggtgtagagc 32702050 Query: 181 gaccagatgaggccgaagacgcccaggaggatccaccccagcaggttgttgctcagcccc 240 ||||||||||||||||| || || || |||||||||||||||||||||||||||||||| Sbjct: 32702051 gaccagatgaggccgaacaccccgagcaggatccaccccagcaggttgttgctcagcccg 32702110 Query: 241 aggctgagcccggtgccctccgtcgacat 269 ||||||||||||||||||||||||||||| Sbjct: 32702111 aggctgagcccggtgccctccgtcgacat 32702139
>dbj|AP003265.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0490D09 Length = 154430 Score = 224 bits (113), Expect = 1e-55 Identities = 140/149 (93%) Strand = Plus / Plus Query: 121 agcgagaggccgccggactcctcgtcctcgtcgaggccggaggtgtagacggtgtaaagc 180 ||||||||||||||||||||||||||||| |||||| |||||||||||| |||||| ||| Sbjct: 64786 agcgagaggccgccggactcctcgtcctcctcgaggtcggaggtgtagatggtgtagagc 64845 Query: 181 gaccagatgaggccgaagacgcccaggaggatccaccccagcaggttgttgctcagcccc 240 ||||||||||||||||| || || || |||||||||||||||||||||||||||||||| Sbjct: 64846 gaccagatgaggccgaacaccccgagcaggatccaccccagcaggttgttgctcagcccg 64905 Query: 241 aggctgagcccggtgccctccgtcgacat 269 ||||||||||||||||||||||||||||| Sbjct: 64906 aggctgagcccggtgccctccgtcgacat 64934
>dbj|AK119225.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-H08, full insert sequence Length = 1475 Score = 224 bits (113), Expect = 1e-55 Identities = 140/149 (93%) Strand = Plus / Minus Query: 121 agcgagaggccgccggactcctcgtcctcgtcgaggccggaggtgtagacggtgtaaagc 180 ||||||||||||||||||||||||||||| |||||| |||||||||||| |||||| ||| Sbjct: 1295 agcgagaggccgccggactcctcgtcctcctcgaggtcggaggtgtagatggtgtagagc 1236 Query: 181 gaccagatgaggccgaagacgcccaggaggatccaccccagcaggttgttgctcagcccc 240 ||||||||||||||||| || || || |||||||||||||||||||||||||||||||| Sbjct: 1235 gaccagatgaggccgaacaccccgagcaggatccaccccagcaggttgttgctcagcccg 1176 Query: 241 aggctgagcccggtgccctccgtcgacat 269 ||||||||||||||||||||||||||||| Sbjct: 1175 aggctgagcccggtgccctccgtcgacat 1147
>dbj|AK119161.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-D04, full insert sequence Length = 639 Score = 224 bits (113), Expect = 1e-55 Identities = 140/149 (93%) Strand = Plus / Minus Query: 121 agcgagaggccgccggactcctcgtcctcgtcgaggccggaggtgtagacggtgtaaagc 180 ||||||||||||||||||||||||||||| |||||| |||||||||||| |||||| ||| Sbjct: 438 agcgagaggccgccggactcctcgtcctcctcgaggtcggaggtgtagatggtgtagagc 379 Query: 181 gaccagatgaggccgaagacgcccaggaggatccaccccagcaggttgttgctcagcccc 240 ||||||||||||||||| || || || |||||||||||||||||||||||||||||||| Sbjct: 378 gaccagatgaggccgaacaccccgagcaggatccaccccagcaggttgttgctcagcccg 319 Query: 241 aggctgagcccggtgccctccgtcgacat 269 ||||||||||||||||||||||||||||| Sbjct: 318 aggctgagcccggtgccctccgtcgacat 290
>dbj|AK060438.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-011-D03, full insert sequence Length = 635 Score = 224 bits (113), Expect = 1e-55 Identities = 140/149 (93%) Strand = Plus / Minus Query: 121 agcgagaggccgccggactcctcgtcctcgtcgaggccggaggtgtagacggtgtaaagc 180 ||||||||||||||||||||||||||||| |||||| |||||||||||| |||||| ||| Sbjct: 442 agcgagaggccgccggactcctcgtcctcctcgaggtcggaggtgtagatggtgtagagc 383 Query: 181 gaccagatgaggccgaagacgcccaggaggatccaccccagcaggttgttgctcagcccc 240 ||||||||||||||||| || || || |||||||||||||||||||||||||||||||| Sbjct: 382 gaccagatgaggccgaacaccccgagcaggatccaccccagcaggttgttgctcagcccg 323 Query: 241 aggctgagcccggtgccctccgtcgacat 269 ||||||||||||||||||||||||||||| Sbjct: 322 aggctgagcccggtgccctccgtcgacat 294
>dbj|AK060476.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-012-F04, full insert sequence Length = 522 Score = 216 bits (109), Expect = 3e-53 Identities = 139/149 (93%) Strand = Plus / Minus Query: 121 agcgagaggccgccggactcctcgtcctcgtcgaggccggaggtgtagacggtgtaaagc 180 |||| |||||||||||||||||||||||| |||||| |||||||||||| |||||| ||| Sbjct: 442 agcgggaggccgccggactcctcgtcctcctcgaggtcggaggtgtagatggtgtagagc 383 Query: 181 gaccagatgaggccgaagacgcccaggaggatccaccccagcaggttgttgctcagcccc 240 ||||||||||||||||| || || || |||||||||||||||||||||||||||||||| Sbjct: 382 gaccagatgaggccgaacaccccgagcaggatccaccccagcaggttgttgctcagcccg 323 Query: 241 aggctgagcccggtgccctccgtcgacat 269 ||||||||||||||||||||||||||||| Sbjct: 322 aggctgagcccggtgccctccgtcgacat 294
>gb|AC130601.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0108E17, complete sequence Length = 139829 Score = 210 bits (106), Expect = 2e-51 Identities = 136/146 (93%) Strand = Plus / Minus Query: 124 gagaggccgccggactcctcgtcctcgtcgaggccggaggtgtagacggtgtaaagcgac 183 ||||||||||||||||| ||||| |||||||| |||||||||||||||||| |||||| Sbjct: 62824 gagaggccgccggactcgtcgtcgtcgtcgagcgtggaggtgtagacggtgtagagcgac 62765 Query: 184 cagatgaggccgaagacgcccaggaggatccaccccagcaggttgttgctcagccccagg 243 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 62764 cagatgaggccgaacacgccgaggaggatccaccccagcaggttgttgctcagccccagg 62705 Query: 244 ctgagcccggtgccctccgtcgacat 269 || |||||||| |||||||||||||| Sbjct: 62704 ctcagcccggtcccctccgtcgacat 62679
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 210 bits (106), Expect = 2e-51 Identities = 136/146 (93%) Strand = Plus / Minus Query: 124 gagaggccgccggactcctcgtcctcgtcgaggccggaggtgtagacggtgtaaagcgac 183 ||||||||||||||||| ||||| |||||||| |||||||||||||||||| |||||| Sbjct: 24993971 gagaggccgccggactcgtcgtcgtcgtcgagcgtggaggtgtagacggtgtagagcgac 24993912 Query: 184 cagatgaggccgaagacgcccaggaggatccaccccagcaggttgttgctcagccccagg 243 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 24993911 cagatgaggccgaacacgccgaggaggatccaccccagcaggttgttgctcagccccagg 24993852 Query: 244 ctgagcccggtgccctccgtcgacat 269 || |||||||| |||||||||||||| Sbjct: 24993851 ctcagcccggtcccctccgtcgacat 24993826
>gb|AY103930.1| Zea mays PCO070877 mRNA sequence Length = 829 Score = 208 bits (105), Expect = 7e-51 Identities = 138/149 (92%) Strand = Plus / Minus Query: 121 agcgagaggccgccggactcctcgtcctcgtcgaggccggaggtgtagacggtgtaaagc 180 ||||||||||| |||||||||||||||||||||||| | |||||||||| |||||| || Sbjct: 533 agcgagaggccaccggactcctcgtcctcgtcgaggtcagaggtgtagatggtgtagagg 474 Query: 181 gaccagatgaggccgaagacgcccaggaggatccaccccagcaggttgttgctcagcccc 240 |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct: 473 gaccagatgaggccgaagacccccaggaggatccaccccagcaggttgttgctgagcccg 414 Query: 241 aggctgagcccggtgccctccgtcgacat 269 ||||| ||||||||||||||||| ||||| Sbjct: 413 aggctcagcccggtgccctccgtggacat 385
>gb|AY112348.1| Zea mays CL5838_2 mRNA sequence Length = 670 Score = 194 bits (98), Expect = 1e-46 Identities = 128/138 (92%) Strand = Plus / Minus Query: 132 gccggactcctcgtcctcgtcgaggccggaggtgtagacggtgtaaagcgaccagatgag 191 |||||| || ||||||| |||||| |||||||||||||||||| || ||||||||||| Sbjct: 479 gccggagtcgtcgtccttgtcgagcgtggaggtgtagacggtgtagagggaccagatgag 420 Query: 192 gccgaagacgcccaggaggatccaccccagcaggttgttgctcagccccaggctgagccc 251 ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 419 gccgaagacgcccagcaggatccaccccagcaggttgttgctgagccccaggctgagccc 360 Query: 252 ggtgccctccgtcgacat 269 |||||||||||||||||| Sbjct: 359 ggtgccctccgtcgacat 342
>dbj|AK066345.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013064H24, full insert sequence Length = 741 Score = 123 bits (62), Expect = 3e-25 Identities = 86/94 (91%) Strand = Plus / Minus Query: 124 gagaggccgccggactcctcgtcctcgtcgaggccggaggtgtagacggtgtaaagcgac 183 ||||||||||||||||| ||||| |||||||| |||||||||||||||||| |||||| Sbjct: 399 gagaggccgccggactcgtcgtcgtcgtcgagcgtggaggtgtagacggtgtagagcgac 340 Query: 184 cagatgaggccgaagacgcccaggaggatccacc 217 |||||||||||||| ||||| ||||||||||||| Sbjct: 339 cagatgaggccgaacacgccgaggaggatccacc 306
>ref|XM_475670.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 375 Score = 115 bits (58), Expect = 7e-23 Identities = 85/94 (90%) Strand = Plus / Minus Query: 124 gagaggccgccggactcctcgtcctcgtcgaggccggaggtgtagacggtgtaaagcgac 183 ||||||||||||||||| ||||| |||||||| |||||||||||||||||| |||||| Sbjct: 315 gagaggccgccggactcgtcgtcgtcgtcgagcgtggaggtgtagacggtgtagagcgac 256 Query: 184 cagatgaggccgaagacgcccaggaggatccacc 217 |||||||||||||| ||||| |||||| |||||| Sbjct: 255 cagatgaggccgaacacgccgaggagggtccacc 222
>ref|XM_782343.1| PREDICTED: Strongylocentrotus purpuratus similar to Arylsulfatase A precursor (ASA) (Cerebroside-sulfatase) (LOC582391), mRNA Length = 2482 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Minus Query: 190 aggccgaagacgcccaggagga 211 |||||||||||||||||||||| Sbjct: 47 aggccgaagacgcccaggagga 26
>ref|XM_511186.1| PREDICTED: Pan troglodytes megakaryoblastic leukemia 2 protein (LOC454334), mRNA Length = 3346 Score = 42.1 bits (21), Expect = 0.88 Identities = 21/21 (100%) Strand = Plus / Plus Query: 225 gttgttgctcagccccaggct 245 ||||||||||||||||||||| Sbjct: 2053 gttgttgctcagccccaggct 2073
>gb|AC012626.10| Homo sapiens chromosome 16 clone CTD-2118O12, complete sequence Length = 149370 Score = 42.1 bits (21), Expect = 0.88 Identities = 21/21 (100%) Strand = Plus / Minus Query: 225 gttgttgctcagccccaggct 245 ||||||||||||||||||||| Sbjct: 91737 gttgttgctcagccccaggct 91717
>gb|BC073950.1| Homo sapiens MKL/myocardin-like 2, mRNA (cDNA clone IMAGE:5521559), containing frame-shift errors Length = 2561 Score = 42.1 bits (21), Expect = 0.88 Identities = 21/21 (100%) Strand = Plus / Plus Query: 225 gttgttgctcagccccaggct 245 ||||||||||||||||||||| Sbjct: 495 gttgttgctcagccccaggct 515
>emb|CR749797.1| Homo sapiens mRNA; cDNA DKFZp686J1745 (from clone DKFZp686J1745) Length = 7372 Score = 42.1 bits (21), Expect = 0.88 Identities = 21/21 (100%) Strand = Plus / Plus Query: 225 gttgttgctcagccccaggct 245 ||||||||||||||||||||| Sbjct: 854 gttgttgctcagccccaggct 874
>dbj|AK127530.1| Homo sapiens cDNA FLJ45623 fis, clone BRTHA3027957, weakly similar to Homo sapiens megakaryoblastic leukemia (translocation) 1 (MKL1) Length = 3292 Score = 42.1 bits (21), Expect = 0.88 Identities = 21/21 (100%) Strand = Plus / Plus Query: 225 gttgttgctcagccccaggct 245 ||||||||||||||||||||| Sbjct: 584 gttgttgctcagccccaggct 604
>gb|AC040173.5| Homo sapiens chromosome 16 clone RP11-65J21, complete sequence Length = 192971 Score = 42.1 bits (21), Expect = 0.88 Identities = 21/21 (100%) Strand = Plus / Minus Query: 225 gttgttgctcagccccaggct 245 ||||||||||||||||||||| Sbjct: 179756 gttgttgctcagccccaggct 179736
>dbj|AB033069.2| Homo sapiens mRNA for KIAA1243 protein, partial cds Length = 7815 Score = 42.1 bits (21), Expect = 0.88 Identities = 21/21 (100%) Strand = Plus / Plus Query: 225 gttgttgctcagccccaggct 245 ||||||||||||||||||||| Sbjct: 1315 gttgttgctcagccccaggct 1335
>gb|AF040659.1| Caenorhabditis elegans cosmid ZK484, complete sequence Length = 32750 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 tccatgtctggaattacatt 47 |||||||||||||||||||| Sbjct: 10116 tccatgtctggaattacatt 10135
>gb|AC002463.1| Homo sapiens BAC clone CTA-302F4 from 7, complete sequence Length = 135684 Score = 40.1 bits (20), Expect = 3.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 23 aaatatccatgtctggaattacattaca 50 |||||||||||| ||||||| ||||||| Sbjct: 83412 aaatatccatgtttggaatttcattaca 83439
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 cctcgtcgaggccggaggtg 165 |||||||||||||||||||| Sbjct: 2257836 cctcgtcgaggccggaggtg 2257855
>emb|AL137059.20| Human DNA sequence from clone RP11-125I23 on chromosome 13 Contains the MTIF3 gene for mitochondrial translational initiation factor 3, the GTF3A gene for general transcription factor IIIA (AP2, TFIIIA) and two CpG islands, complete sequence Length = 166141 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 gtctggaattacattacacc 52 |||||||||||||||||||| Sbjct: 134971 gtctggaattacattacacc 134990
>gb|AC116608.1| Papio hamadryas chromosome , clone RP41-155I24, complete sequence Length = 161654 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 cccggtgccctccgtcgaca 268 |||||||||||||||||||| Sbjct: 20167 cccggtgccctccgtcgaca 20148
>gb|AF272641.1|AF272641 Gorilla gorilla glucocerebrosidase (GBA) pseudogene, complete sequence Length = 5498 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 cccaggctgagcccggtgcc 257 |||||||||||||||||||| Sbjct: 4971 cccaggctgagcccggtgcc 4952 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,688,997 Number of Sequences: 3902068 Number of extensions: 1688997 Number of successful extensions: 37145 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37066 Number of HSP's gapped (non-prelim): 79 length of query: 269 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 247 effective length of database: 17,147,199,772 effective search space: 4235358343684 effective search space used: 4235358343684 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
